Wall clock time and date at job start Sun Mar 29 2020 21:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46942 * 2 1 4 4 C 1.46497 * 119.99980 * 275.79203 * 3 2 1 5 5 C 1.50706 * 109.47110 * 269.99684 * 4 3 2 6 6 H 1.08001 * 119.99657 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00089 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00046 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46813 * 90.00565 * 9 7 5 11 11 H 1.48507 * 109.47048 * 210.00636 * 9 7 5 12 12 H 1.48497 * 109.47179 * 330.00330 * 9 7 5 13 13 C 1.34778 * 119.99884 * 95.79560 * 3 2 1 14 14 O 1.21612 * 120.00114 * 183.41437 * 13 3 2 15 15 C 1.47378 * 120.00119 * 3.40280 * 13 3 2 16 16 C 1.36410 * 127.19083 * 154.82467 * 15 13 3 17 17 O 1.33656 * 108.39655 * 180.02562 * 16 15 13 18 18 C 1.34209 * 110.91180 * 0.02562 * 17 16 15 19 19 C 1.50701 * 125.44192 * 179.97438 * 18 17 16 20 20 C 1.34185 * 109.12115 * 359.97438 * 18 17 16 21 21 H 1.08998 * 109.46951 * 298.13134 * 1 2 3 22 22 H 1.08997 * 109.47337 * 58.13725 * 1 2 3 23 23 H 1.09007 * 109.46742 * 178.13322 * 1 2 3 24 24 H 1.09003 * 109.47149 * 240.00079 * 2 1 3 25 25 H 1.09002 * 109.47204 * 120.00296 * 2 1 3 26 26 H 1.09000 * 109.47603 * 29.99730 * 4 3 2 27 27 H 1.09003 * 109.47110 * 150.00495 * 4 3 2 28 28 H 0.97006 * 119.99610 * 179.97438 * 8 7 5 29 29 H 1.08002 * 125.80449 * 0.02562 * 16 15 13 30 30 H 1.08996 * 109.47142 * 269.99539 * 19 18 17 31 31 H 1.08995 * 109.46989 * 29.99952 * 19 18 17 32 32 H 1.09007 * 109.47073 * 149.99565 * 19 18 17 33 33 H 1.08002 * 127.02011 * 179.74058 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1417 2.1145 -1.2622 5 6 3.5168 1.8949 -1.8384 6 1 4.2275 1.2711 -1.3167 7 6 3.8672 2.4894 -3.0320 8 7 3.0015 3.2486 -3.6675 9 14 5.5715 2.2165 -3.7465 10 1 5.5519 1.0245 -4.6320 11 1 5.9758 3.4102 -4.5321 12 1 6.5415 1.9980 -2.6436 13 6 2.3540 1.9773 1.1613 14 8 2.7000 3.1431 1.1686 15 6 2.3015 1.2163 2.4223 16 6 3.0147 1.4558 3.5602 17 8 2.6758 0.5386 4.4713 18 6 1.7583 -0.3086 3.9798 19 6 1.1487 -1.4665 4.7274 20 6 1.4703 0.0399 2.7164 21 1 -0.3633 0.4845 0.9063 22 1 -0.3634 0.5425 -0.8728 23 1 -0.3633 -1.0272 -0.0335 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.3912 1.7551 -1.9662 27 1 1.9896 3.1785 -1.0807 28 1 3.2482 3.6672 -4.5071 29 1 3.7314 2.2514 3.7010 30 1 1.7516 -2.3603 4.5671 31 1 1.1174 -1.2354 5.7921 32 1 0.1361 -1.6412 4.3636 33 1 0.7738 -0.4474 2.0501 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130323377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:50 Heat of formation + Delta-G solvation = -38.267295 kcal Electronic energy + Delta-G solvation = -16857.864882 eV Core-core repulsion = 14077.888525 eV Total energy + Delta-G solvation = -2779.976358 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.54725 -40.50332 -37.12637 -35.13215 -33.95895 -32.80973 -31.67467 -29.27314 -27.45781 -25.75236 -24.50153 -23.13474 -21.91093 -19.63179 -18.67385 -18.28746 -17.61217 -17.16726 -17.08099 -16.19152 -15.85632 -15.40938 -14.67675 -14.38314 -14.34075 -13.94452 -13.68519 -13.58947 -13.31232 -13.20909 -13.10424 -12.72160 -12.65145 -12.43273 -12.22290 -11.98883 -11.75215 -10.94826 -10.66630 -10.57181 -9.61972 -9.37085 -8.24676 -6.40377 0.46128 1.09683 1.35193 1.38479 1.49091 1.89782 2.17359 2.39273 2.46699 3.04464 3.56791 3.81490 4.02412 4.11464 4.36059 4.39067 4.51090 4.61562 4.80971 4.82406 4.91429 4.92292 4.95955 5.01206 5.13819 5.19661 5.37724 5.48616 5.54542 5.81609 6.02900 6.07564 6.65908 6.73049 7.23094 7.39945 8.82658 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034027 B = 0.006424 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.687734 B = 4357.833760 C = 4633.059801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.083 3.917 3 N -0.591 5.591 4 C 0.261 3.739 5 C -0.547 4.547 6 H 0.051 0.949 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.274 1.274 13 C 0.566 3.434 14 O -0.603 6.603 15 C -0.255 4.255 16 C 0.038 3.962 17 O -0.176 6.176 18 C -0.007 4.007 19 C -0.071 4.071 20 C -0.211 4.211 21 H 0.060 0.940 22 H 0.041 0.959 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.026 0.974 27 H -0.002 1.002 28 H 0.268 0.732 29 H 0.226 0.774 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 -13.344 14.857 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.039 4.039 3 N -0.321 5.321 4 C 0.140 3.860 5 C -0.585 4.585 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.795 3.205 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.199 1.199 13 C 0.357 3.643 14 O -0.487 6.487 15 C -0.259 4.259 16 C -0.033 4.033 17 O -0.071 6.071 18 C -0.056 4.056 19 C -0.127 4.127 20 C -0.229 4.229 21 H 0.079 0.921 22 H 0.060 0.940 23 H 0.123 0.877 24 H 0.088 0.912 25 H 0.128 0.872 26 H 0.044 0.956 27 H 0.016 0.984 28 H 0.077 0.923 29 H 0.242 0.758 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.598 -12.706 14.947 20.150 hybrid contribution 0.822 0.758 -1.168 1.617 sum -3.776 -11.948 13.779 18.625 Atomic orbital electron populations 1.22222 0.94291 1.03983 1.01816 1.22235 0.95664 0.81632 1.04354 1.48066 1.62447 1.15115 1.06439 1.18768 0.96141 0.91025 0.80087 1.21679 0.99578 1.30763 1.06509 0.93067 1.25881 1.01878 0.94253 0.97014 1.70061 1.37026 1.32432 1.17167 0.85367 0.78633 0.78290 0.78215 1.18616 1.20367 1.19870 1.17933 0.76848 0.85686 0.83882 1.90701 1.51311 1.18908 1.87738 1.21503 1.06748 1.02289 0.95397 1.24481 0.99840 0.93192 0.85741 1.83758 1.48536 1.34441 1.40409 1.23187 0.92913 0.95461 0.94035 1.20573 1.01294 0.90667 1.00169 1.23307 1.04903 0.97376 0.97325 0.92108 0.93960 0.87681 0.91170 0.87188 0.95599 0.98395 0.92273 0.75757 0.88244 0.89287 0.87182 0.79652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 9.08 71.98 0.65 -3.78 16 2 C 0.08 2.80 5.62 86.38 0.49 3.29 16 3 N -0.59 -27.52 2.46 -830.08 -2.04 -29.56 16 4 C 0.26 14.87 5.21 85.64 0.45 15.31 16 5 C -0.55 -32.81 9.39 25.60 0.24 -32.57 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 9 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.57 26.77 7.64 86.65 0.66 27.44 16 14 O -0.60 -34.16 16.56 -4.07 -0.07 -34.23 16 15 C -0.25 -9.06 5.84 -18.99 -0.11 -9.17 16 16 C 0.04 1.13 11.99 67.39 0.81 1.94 16 17 O -0.18 -4.44 10.52 4.49 0.05 -4.39 16 18 C -0.01 -0.16 7.28 24.76 0.18 0.02 16 19 C -0.07 -0.74 10.40 71.24 0.74 0.00 16 20 C -0.21 -5.46 8.22 23.65 0.19 -5.27 16 21 H 0.06 1.57 6.95 -2.39 -0.02 1.56 16 22 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 23 H 0.10 1.90 8.14 -2.38 -0.02 1.89 16 24 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 25 H 0.11 3.17 4.30 -2.39 -0.01 3.16 16 26 H 0.03 1.48 8.06 -2.39 -0.02 1.46 16 27 H 0.00 -0.14 7.38 -2.39 -0.02 -0.15 16 28 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 29 H 0.23 5.97 8.06 -2.91 -0.02 5.94 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.19 3.98 4.19 -2.91 -0.01 3.97 16 Total: -1.00 -78.74 283.69 6.13 -72.61 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.11 Total: 6.50 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 4.76 Total: -1.80 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -1.75 Total: -86.52 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.02 Total: -38.62 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -78.74 6.13 -72.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130323377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.347 kcal (2) G-P(sol) polarization free energy of solvation -78.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds