Wall clock time and date at job start Sun Mar 29 2020 22:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34124 * 125.98843 * 2 1 4 4 C 1.30507 * 109.25681 * 179.72462 * 3 2 1 5 5 N 1.35045 * 108.69137 * 0.44201 * 4 3 2 6 6 C 1.46507 * 126.38941 * 179.82251 * 5 4 3 7 7 C 1.50697 * 109.47005 * 264.68832 * 6 5 4 8 8 O 1.21283 * 120.00521 * 359.73077 * 7 6 5 9 9 N 1.34784 * 119.99774 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.72962 * 9 7 6 11 11 C 1.50699 * 109.46700 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00629 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99714 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00098 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99896 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47258 * 59.99641 * 15 13 11 17 17 H 1.48510 * 109.47258 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47373 * 299.99470 * 15 13 11 19 19 C 1.34671 * 125.98841 * 179.97438 * 2 1 3 20 20 C 1.50697 * 126.58995 * 359.96789 * 19 2 1 21 21 H 1.08997 * 109.47252 * 270.00127 * 1 2 3 22 22 H 1.09006 * 109.46895 * 30.00012 * 1 2 3 23 23 H 1.08996 * 109.46969 * 149.99693 * 1 2 3 24 24 H 1.07992 * 125.65060 * 180.29278 * 4 3 2 25 25 H 1.09001 * 109.46566 * 144.69628 * 6 5 4 26 26 H 1.08993 * 109.47390 * 24.69418 * 6 5 4 27 27 H 0.97005 * 119.99846 * 359.72750 * 9 7 6 28 28 H 1.08998 * 109.47134 * 299.99552 * 10 9 7 29 29 H 1.08994 * 109.47397 * 59.99843 * 10 9 7 30 30 H 0.97003 * 119.99632 * 179.97438 * 14 13 11 31 31 H 1.08999 * 109.46838 * 270.03928 * 20 19 2 32 32 H 1.09000 * 109.47109 * 30.04097 * 20 19 2 33 33 H 1.09000 * 109.46764 * 150.03952 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 0.0059 5 7 3.5912 -0.6401 0.0000 6 6 4.7997 -1.4684 0.0000 7 6 5.1439 -1.8546 -1.4154 8 8 4.4456 -1.4794 -2.3333 9 7 6.2245 -2.6219 -1.6607 10 6 6.5558 -3.0023 -3.0362 11 6 7.7988 -3.8543 -3.0361 12 1 8.2929 -4.0886 -2.1048 13 6 8.3059 -4.3337 -4.2252 14 7 7.7046 -4.0480 -5.3594 15 14 9.8472 -5.3892 -4.2253 16 1 9.6095 -6.6123 -3.4174 17 1 10.1830 -5.7749 -5.6195 18 1 10.9740 -4.6200 -3.6390 19 6 2.2984 -1.0897 0.0005 20 6 1.8472 -2.5275 0.0018 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8899 -0.5139 24 1 4.4004 1.3687 0.0119 25 1 4.6233 -2.3682 0.5894 26 1 5.6259 -0.9057 0.4343 27 1 6.7828 -2.9223 -0.9265 28 1 5.7287 -3.5671 -3.4662 29 1 6.7300 -2.1047 -3.6294 30 1 8.0617 -4.3850 -6.1959 31 1 1.7383 -2.8731 1.0298 32 1 0.8894 -2.6082 -0.5122 33 1 2.5877 -3.1411 -0.5113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134590180.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:18 Heat of formation + Delta-G solvation = -12.301518 kcal Electronic energy + Delta-G solvation = -16339.854057 eV Core-core repulsion = 13593.296411 eV Total energy + Delta-G solvation = -2746.557646 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.12500 -40.47818 -36.27288 -35.23126 -34.40102 -33.51894 -30.71130 -29.45199 -27.94402 -26.25835 -24.68300 -22.17817 -21.38746 -20.59885 -19.20326 -17.93305 -17.78236 -16.83651 -16.54060 -16.26461 -15.85060 -15.43276 -14.64862 -14.63538 -14.06802 -14.04126 -13.72794 -13.70870 -13.51095 -13.16642 -13.11606 -12.95598 -12.90292 -12.68251 -12.26005 -11.54284 -11.28468 -10.90719 -10.81855 -10.34153 -9.93528 -9.04731 -8.31026 -6.48295 0.99142 1.43607 1.46962 1.55349 1.56742 1.76262 2.14618 2.32315 2.56150 3.04505 3.70164 3.76705 3.80205 3.92087 4.12522 4.22117 4.40392 4.54753 4.70286 4.90311 4.99427 5.06377 5.09973 5.13843 5.18884 5.41387 5.44827 5.61375 5.80765 5.90282 6.25283 6.62083 6.78433 7.13738 7.20488 7.38080 8.80832 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.055139 B = 0.004532 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.690088 B = 6176.976191 C = 6236.380566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.037 4.037 3 N -0.528 5.528 4 C 0.180 3.820 5 N -0.444 5.444 6 C 0.096 3.904 7 C 0.479 3.521 8 O -0.593 6.593 9 N -0.697 5.697 10 C 0.268 3.732 11 C -0.556 4.556 12 H 0.089 0.911 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.984 3.016 16 H -0.261 1.261 17 H -0.289 1.289 18 H -0.261 1.261 19 C -0.025 4.025 20 C -0.073 4.073 21 H 0.080 0.920 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.230 0.770 25 H 0.152 0.848 26 H 0.166 0.834 27 H 0.414 0.586 28 H -0.014 1.014 29 H -0.014 1.014 30 H 0.268 0.732 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.931 1.865 15.930 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.164 4.164 3 N -0.247 5.247 4 C -0.102 4.102 5 N -0.127 5.127 6 C -0.030 4.030 7 C 0.265 3.735 8 O -0.474 6.474 9 N -0.348 5.348 10 C 0.145 3.855 11 C -0.594 4.594 12 H 0.107 0.893 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.807 3.193 16 H -0.185 1.185 17 H -0.214 1.214 18 H -0.185 1.185 19 C -0.139 4.139 20 C -0.131 4.131 21 H 0.099 0.901 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.246 0.754 25 H 0.169 0.831 26 H 0.183 0.817 27 H 0.251 0.749 28 H 0.004 0.996 29 H 0.004 0.996 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.568 2.819 15.083 16.691 hybrid contribution 1.301 -1.141 -0.654 1.850 sum -5.268 1.678 14.428 15.451 Atomic orbital electron populations 1.20052 0.86143 1.02719 1.02823 1.21001 0.97750 0.88141 1.09522 1.70098 1.01587 1.31537 1.21497 1.25393 0.97564 0.82242 1.04977 1.44993 1.06031 1.07504 1.54190 1.21931 0.88169 0.99650 0.93253 1.21581 0.80890 0.78711 0.92349 1.90740 1.52071 1.56427 1.48201 1.46093 1.27360 1.50511 1.10858 1.18533 0.94779 0.93408 0.78799 1.21598 1.10503 1.32601 0.94702 0.89317 1.26072 1.01303 0.97561 0.94645 1.70136 1.42031 1.46015 0.98929 0.85211 0.78035 0.78764 0.77246 1.18496 1.21430 1.18546 1.21433 0.83628 0.98481 1.10399 1.20286 1.01897 0.87125 1.03780 0.90116 0.92126 0.90254 0.75427 0.83062 0.81687 0.74935 0.99571 0.99645 0.92281 0.88273 0.89328 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.37 10.22 71.24 0.73 -0.65 16 2 C -0.04 -1.12 7.09 41.39 0.29 -0.83 16 3 N -0.53 -17.71 11.25 -188.31 -2.12 -19.83 16 4 C 0.18 5.21 12.56 180.26 2.26 7.47 16 5 N -0.44 -12.33 2.24 -518.62 -1.16 -13.49 16 6 C 0.10 2.08 6.28 85.63 0.54 2.62 16 7 C 0.48 17.17 7.90 87.65 0.69 17.87 16 8 O -0.59 -28.73 16.43 -3.04 -0.05 -28.78 16 9 N -0.70 -26.21 5.55 -466.79 -2.59 -28.80 16 10 C 0.27 14.02 5.43 85.63 0.46 14.48 16 11 C -0.56 -28.78 9.28 25.60 0.24 -28.55 16 12 H 0.09 4.04 7.60 -2.91 -0.02 4.01 16 13 C 0.00 0.21 5.46 84.66 0.46 0.67 16 14 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 15 Si 0.98 40.80 29.54 68.60 2.03 42.82 16 16 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 17 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 19 C -0.03 -0.72 6.95 40.95 0.28 -0.44 16 20 C -0.07 -1.62 9.86 71.23 0.70 -0.92 16 21 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 23 H 0.08 1.55 7.17 -2.39 -0.02 1.54 16 24 H 0.23 4.82 8.06 -2.91 -0.02 4.79 16 25 H 0.15 2.27 8.02 -2.39 -0.02 2.25 16 26 H 0.17 2.17 8.13 -2.39 -0.02 2.15 16 27 H 0.41 11.84 8.32 -92.70 -0.77 11.07 16 28 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 29 H -0.01 -0.87 8.14 -2.39 -0.02 -0.88 16 30 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.79 7.18 -2.39 -0.02 1.77 16 33 H 0.05 1.28 7.95 -2.39 -0.02 1.26 16 Total: -1.00 -79.27 292.08 3.40 -75.87 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.34 Total: 15.53 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 6.67 Total: 11.73 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -5.59 Total: -117.17 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.05 Total: -28.78 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Total: -79.27 3.40 -75.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134590180.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.567 kcal (2) G-P(sol) polarization free energy of solvation -79.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds