Wall clock time and date at job start Sun Mar 29 2020 22:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50693 * 109.47268 * 2 1 4 4 C 1.39677 * 126.07101 * 124.99793 * 3 2 1 5 5 C 1.38406 * 105.36061 * 180.02562 * 4 3 2 6 6 C 1.47154 * 126.88364 * 180.02562 * 5 4 3 7 7 O 1.21632 * 120.00054 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00031 * 179.72969 * 6 5 4 9 9 C 1.46504 * 119.99871 * 180.27427 * 8 6 5 10 10 H 1.08998 * 109.47270 * 34.99622 * 9 8 6 11 11 C 1.53001 * 109.47184 * 274.99572 * 9 8 6 12 12 C 1.50699 * 109.47007 * 154.99656 * 9 8 6 13 13 H 1.07999 * 120.00258 * 34.99994 * 12 9 8 14 14 C 1.37887 * 120.00144 * 215.00083 * 12 9 8 15 15 N 1.31510 * 119.99895 * 184.91346 * 14 12 9 16 16 Si 1.86795 * 119.99742 * 4.91533 * 14 12 9 17 17 H 1.48506 * 109.46993 * 84.83265 * 16 14 12 18 18 H 1.48500 * 109.47286 * 204.83283 * 16 14 12 19 19 H 1.48497 * 109.47429 * 324.83423 * 16 14 12 20 20 N 1.36601 * 106.23313 * 0.26628 * 5 4 3 21 21 H 0.96992 * 125.19123 * 179.73813 * 20 5 4 22 22 N 1.28449 * 109.61647 * 359.55147 * 20 5 4 23 23 H 1.09004 * 109.47125 * 60.00154 * 1 2 3 24 24 H 1.08999 * 109.47227 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47224 * 299.99727 * 1 2 3 26 26 H 1.09004 * 109.46592 * 240.00182 * 2 1 3 27 27 H 1.08996 * 109.47199 * 120.00710 * 2 1 3 28 28 H 1.08001 * 127.31902 * 0.08061 * 4 3 2 29 29 H 0.97000 * 120.00086 * 0.27143 * 8 6 5 30 30 H 1.08998 * 109.46854 * 55.03508 * 11 9 8 31 31 H 1.08995 * 109.46880 * 175.03926 * 11 9 8 32 32 H 1.09006 * 109.46993 * 295.03931 * 11 9 8 33 33 H 0.97000 * 119.99833 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9170 1.9802 0.9248 5 6 3.0835 3.2946 0.5242 6 6 3.9243 4.3150 1.1701 7 8 4.5647 4.0344 2.1654 8 7 3.9886 5.5592 0.6559 9 6 4.8304 6.5734 1.2955 10 1 5.7260 6.1007 1.6986 11 6 4.0513 7.2411 2.4304 12 6 5.2255 7.6126 0.2781 13 1 4.5339 7.8951 -0.5019 14 6 6.4699 8.2029 0.3430 15 7 6.7793 9.1775 -0.4840 16 14 7.7162 7.6182 1.6055 17 1 8.4532 6.4465 1.0677 18 1 8.6747 8.7137 1.8991 19 1 7.0115 7.2294 2.8535 20 7 2.3066 3.4561 -0.5877 21 1 2.2164 4.2799 -1.0917 22 7 1.7167 2.3496 -0.8661 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.3747 1.4910 1.7719 29 1 3.4776 5.7831 -0.1376 30 1 3.6899 6.4788 3.1205 31 1 4.7050 7.9323 2.9623 32 1 3.2038 7.7879 2.0168 33 1 7.6546 9.5930 -0.4381 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194644523.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:59 Heat of formation + Delta-G solvation = -4.977437 kcal Electronic energy + Delta-G solvation = -16382.171824 eV Core-core repulsion = 13635.931774 eV Total energy + Delta-G solvation = -2746.240050 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.56722 -40.47555 -36.86107 -35.35237 -34.44188 -32.43482 -31.61371 -30.53682 -27.37902 -25.32297 -24.67192 -22.28452 -21.80181 -20.86822 -20.22986 -18.71134 -17.41115 -16.94182 -16.74843 -16.06877 -15.61588 -15.28041 -14.93524 -14.66499 -14.61021 -14.51710 -14.27874 -13.38309 -13.14611 -13.07796 -12.84384 -12.52084 -12.36044 -12.20228 -11.90080 -11.56150 -11.29229 -11.15261 -10.87056 -10.30049 -10.12523 -9.91185 -8.42483 -6.50024 0.19496 1.28896 1.34157 1.43718 1.53086 1.80429 2.15429 2.20566 2.25200 2.98838 3.53767 3.73508 3.98207 4.32102 4.43630 4.50137 4.59831 4.69344 4.70070 4.76877 4.93351 5.03542 5.15259 5.24808 5.29332 5.40134 5.40745 5.53095 5.57363 5.95184 6.07726 6.53337 6.67120 6.96160 7.10245 7.22429 8.72077 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047762 B = 0.005288 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.103000 B = 5293.806117 C = 5462.656235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C 0.024 3.976 4 C -0.164 4.164 5 C -0.042 4.042 6 C 0.579 3.421 7 O -0.574 6.574 8 N -0.696 5.696 9 C 0.234 3.766 10 H 0.036 0.964 11 C -0.143 4.143 12 C -0.530 4.530 13 H 0.059 0.941 14 C 0.036 3.964 15 N -0.927 5.927 16 Si 0.925 3.075 17 H -0.274 1.274 18 H -0.277 1.277 19 H -0.253 1.253 20 N -0.368 5.368 21 H 0.455 0.545 22 N -0.278 5.278 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.170 0.830 29 H 0.402 0.598 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.527 -15.167 1.045 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.133 4.133 4 C -0.193 4.193 5 C -0.171 4.171 6 C 0.364 3.636 7 O -0.453 6.453 8 N -0.344 5.344 9 C 0.131 3.869 10 H 0.053 0.947 11 C -0.201 4.201 12 C -0.568 4.568 13 H 0.077 0.923 14 C -0.165 4.165 15 N -0.565 5.565 16 Si 0.749 3.251 17 H -0.200 1.200 18 H -0.202 1.202 19 H -0.177 1.177 20 N -0.086 5.086 21 H 0.302 0.698 22 N -0.112 5.112 23 H 0.068 0.932 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.188 0.812 29 H 0.237 0.763 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.533 -14.971 0.765 18.321 hybrid contribution 1.133 0.850 0.370 1.464 sum -9.400 -14.121 1.135 17.001 Atomic orbital electron populations 1.21691 0.94026 1.02741 1.01600 1.20051 0.96560 0.86431 1.04549 1.22565 0.99460 0.98067 0.93258 1.22315 1.02216 0.91826 1.02941 1.21704 1.02932 0.97547 0.94874 1.17397 0.80871 0.81770 0.83545 1.90762 1.46479 1.80899 1.27126 1.46336 1.47200 1.10122 1.30773 1.18993 0.90178 0.85765 0.91965 0.94658 1.22128 1.00608 0.99638 0.97774 1.21148 1.01016 1.21000 1.13682 0.92263 1.25597 0.99558 0.94366 0.97017 1.69966 1.22850 1.24697 1.38976 0.86079 0.79657 0.78314 0.81011 1.19970 1.20193 1.17702 1.43651 1.32306 1.11600 1.21014 0.69807 1.73034 1.19717 0.93121 1.25314 0.93198 0.90182 0.93382 0.89349 0.88173 0.81224 0.76274 0.94212 0.92921 0.92219 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.87 71.98 0.71 -1.40 16 2 C -0.04 -0.60 6.51 29.85 0.19 -0.41 16 3 C 0.02 0.59 6.49 43.05 0.28 0.87 16 4 C -0.16 -4.55 10.77 22.66 0.24 -4.30 16 5 C -0.04 -1.28 7.16 40.78 0.29 -0.99 16 6 C 0.58 22.00 7.77 86.58 0.67 22.68 16 7 O -0.57 -25.78 16.58 -4.13 -0.07 -25.85 16 8 N -0.70 -26.60 5.07 -449.63 -2.28 -28.88 16 9 C 0.23 10.69 2.22 44.24 0.10 10.79 16 10 H 0.04 1.76 4.73 -2.39 -0.01 1.75 16 11 C -0.14 -5.91 9.47 71.98 0.68 -5.23 16 12 C -0.53 -27.71 9.05 25.60 0.23 -27.48 16 13 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 14 C 0.04 1.96 5.47 84.66 0.46 2.42 16 15 N -0.93 -53.98 13.96 21.45 0.30 -53.68 16 16 Si 0.92 43.36 26.99 68.60 1.85 45.21 16 17 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.25 -11.51 6.82 99.48 0.68 -10.83 16 20 N -0.37 -9.50 6.85 -48.00 -0.33 -9.82 16 21 H 0.45 9.32 8.22 -220.01 -1.81 7.52 16 22 N -0.28 -7.22 12.11 -47.49 -0.58 -7.80 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.10 1.26 8.12 -2.39 -0.02 1.24 16 28 H 0.17 4.32 8.06 -2.91 -0.02 4.29 16 29 H 0.40 13.03 7.78 -92.71 -0.72 12.31 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -65.91 287.64 1.35 -64.56 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -1.42 Total: 19.30 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 3.87 Total: -3.06 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -2.88 Total: -100.17 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.07 Total: -25.85 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.85 Total: 45.21 kcal Total: -65.91 1.35 -64.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194644523.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.584 kcal (2) G-P(sol) polarization free energy of solvation -65.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds