Wall clock time and date at job start Sun Mar 29 2020 21:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39868 * 125.89780 * 2 1 4 4 C 1.35321 * 107.92041 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.12740 * 179.97438 * 4 3 2 6 6 C 1.50709 * 109.46878 * 84.99981 * 5 4 3 7 7 O 1.21283 * 119.99688 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99796 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99943 * 180.02562 * 8 6 5 10 10 H 1.09007 * 109.47078 * 34.99474 * 9 8 6 11 11 C 1.53000 * 109.47021 * 275.00054 * 9 8 6 12 12 C 1.50694 * 109.47115 * 154.99835 * 9 8 6 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 N 1.34942 * 107.74388 * 0.22654 * 4 3 2 21 21 H 0.97000 * 126.03721 * 179.77248 * 20 4 3 22 22 N 1.30835 * 125.90102 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46726 * 90.00363 * 1 2 3 24 24 H 1.08996 * 109.46929 * 210.00233 * 1 2 3 25 25 H 1.08997 * 109.47136 * 330.00206 * 1 2 3 26 26 H 1.08005 * 126.03972 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.46935 * 325.00581 * 5 4 3 28 28 H 1.08995 * 109.47337 * 205.00280 * 5 4 3 29 29 H 0.96997 * 119.99849 * 0.02562 * 8 6 5 30 30 H 1.08998 * 109.47089 * 59.99825 * 11 9 8 31 31 H 1.08995 * 109.47131 * 179.97438 * 11 9 8 32 32 H 1.09002 * 109.47106 * 299.99878 * 11 9 8 33 33 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6143 0.7154 0.0006 5 6 4.8351 1.5989 0.0002 6 6 5.1691 1.9947 1.4156 7 8 4.4835 1.5979 2.3340 8 7 6.2296 2.7896 1.6606 9 6 6.5546 3.1739 3.0364 10 1 6.3226 2.3479 3.7088 11 6 5.7297 4.4003 3.4317 12 6 8.0219 3.5032 3.1326 13 1 8.6499 3.4328 2.2567 14 6 8.5632 3.8933 4.3393 15 7 7.7988 3.9785 5.4060 16 14 10.3823 4.3007 4.4587 17 1 10.7118 4.6904 5.8533 18 1 11.1825 3.1102 4.0748 19 1 10.6987 5.4261 3.5430 20 7 3.6088 -0.6340 -0.0042 21 1 4.3908 -1.2079 -0.0080 22 7 2.2742 -1.0598 0.0005 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.9923 2.1598 -0.0004 27 1 4.6359 2.4935 -0.5898 28 1 5.6756 1.0572 -0.4335 29 1 6.7776 3.1072 0.9259 30 1 4.6683 4.1622 3.3620 31 1 5.9711 4.6860 4.4554 32 1 5.9616 5.2263 2.7593 33 1 8.1797 4.2526 6.2550 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260061739.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:12 Heat of formation + Delta-G solvation = -3.596823 kcal Electronic energy + Delta-G solvation = -16304.090887 eV Core-core repulsion = 13557.910705 eV Total energy + Delta-G solvation = -2746.180182 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.24846 -40.37447 -36.73073 -34.41866 -34.19757 -32.71653 -30.89251 -28.83983 -28.26552 -27.31923 -23.41988 -21.69282 -21.06904 -20.81346 -19.08677 -18.25579 -17.51824 -17.05491 -16.15214 -16.01173 -15.64462 -14.76623 -14.63895 -14.57252 -14.28177 -13.88590 -13.70738 -13.49050 -13.18760 -12.98864 -12.86020 -12.78348 -12.59900 -12.25232 -12.15117 -11.54412 -11.10891 -10.84839 -10.58070 -10.19059 -9.74356 -9.55061 -8.16878 -6.34770 0.85350 1.46071 1.47811 1.55666 1.77807 1.81544 1.97808 2.38141 2.74626 3.13787 3.52747 3.83564 4.08985 4.16124 4.45000 4.58108 4.74768 4.77363 4.84351 4.91030 4.94055 5.10827 5.11326 5.26459 5.44534 5.61613 5.70386 5.77589 5.91623 6.10948 6.39744 6.73494 6.74038 6.97615 7.33531 7.58499 8.89135 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.056297 B = 0.004680 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.243717 B = 5981.249095 C = 6166.251223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.063 3.937 3 C -0.277 4.277 4 C 0.111 3.889 5 C -0.069 4.069 6 C 0.499 3.501 7 O -0.598 6.598 8 N -0.702 5.702 9 C 0.270 3.730 10 H -0.006 1.006 11 C -0.133 4.133 12 C -0.547 4.547 13 H 0.077 0.923 14 C 0.013 3.987 15 N -0.919 5.919 16 Si 0.972 3.028 17 H -0.289 1.289 18 H -0.271 1.271 19 H -0.262 1.262 20 N -0.472 5.472 21 H 0.444 0.556 22 N -0.330 5.330 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.156 0.844 27 H 0.154 0.846 28 H 0.138 0.862 29 H 0.409 0.591 30 H 0.011 0.989 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 -2.891 -14.487 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.306 4.306 4 C -0.019 4.019 5 C -0.110 4.110 6 C 0.286 3.714 7 O -0.479 6.479 8 N -0.351 5.351 9 C 0.167 3.833 10 H 0.012 0.988 11 C -0.192 4.192 12 C -0.585 4.585 13 H 0.095 0.905 14 C -0.187 4.187 15 N -0.558 5.558 16 Si 0.797 3.203 17 H -0.215 1.215 18 H -0.196 1.196 19 H -0.187 1.187 20 N -0.181 5.181 21 H 0.289 0.711 22 N -0.154 5.154 23 H 0.114 0.886 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.174 0.826 27 H 0.171 0.829 28 H 0.156 0.844 29 H 0.245 0.755 30 H 0.030 0.970 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.729 -4.375 -13.641 15.828 hybrid contribution 1.489 0.848 0.490 1.782 sum -5.240 -3.528 -13.152 14.590 Atomic orbital electron populations 1.20295 0.84439 1.03942 1.04188 1.22908 0.98663 0.90393 0.98336 1.21396 0.91339 1.00587 1.17309 1.20688 0.96921 0.84826 0.99447 1.20393 0.95408 1.01461 0.93729 1.21084 0.80361 0.78316 0.91687 1.90702 1.51860 1.56953 1.48390 1.46206 1.28946 1.49355 1.10616 1.18312 0.94125 0.92129 0.78781 0.98797 1.21890 0.95833 0.98881 1.02631 1.21546 0.93483 1.47026 0.96448 0.90482 1.25823 1.02939 0.94817 0.95114 1.70061 1.37453 1.47486 1.00750 0.85392 0.78850 0.78948 0.77110 1.21471 1.19561 1.18681 1.46217 1.07273 1.05104 1.59534 0.71097 1.77143 0.87266 1.23607 1.27413 0.88603 0.90955 0.89244 0.82601 0.82872 0.84402 0.75514 0.96974 0.91815 0.93771 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 10.45 71.24 0.74 -0.61 16 2 C 0.06 1.78 7.22 43.10 0.31 2.09 16 3 C -0.28 -7.90 10.65 21.99 0.23 -7.67 16 4 C 0.11 3.09 5.70 41.41 0.24 3.33 16 5 C -0.07 -1.57 6.25 29.10 0.18 -1.39 16 6 C 0.50 18.27 7.79 87.66 0.68 18.95 16 7 O -0.60 -28.83 15.70 -3.04 -0.05 -28.88 16 8 N -0.70 -26.78 5.07 -446.09 -2.26 -29.05 16 9 C 0.27 13.66 2.56 44.24 0.11 13.77 16 10 H -0.01 -0.36 7.58 -2.38 -0.02 -0.38 16 11 C -0.13 -6.66 9.26 71.98 0.67 -5.99 16 12 C -0.55 -28.10 8.73 25.60 0.22 -27.87 16 13 H 0.08 3.62 7.74 -2.91 -0.02 3.59 16 14 C 0.01 0.69 5.30 84.66 0.45 1.14 16 15 N -0.92 -52.49 11.32 21.45 0.24 -52.24 16 16 Si 0.97 41.12 29.54 68.60 2.03 43.14 16 17 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 20 N -0.47 -13.28 7.36 -48.00 -0.35 -13.63 16 21 H 0.44 10.02 8.96 -213.33 -1.91 8.10 16 22 N -0.33 -10.31 12.70 -47.38 -0.60 -10.91 16 23 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.16 3.89 8.06 -2.91 -0.02 3.86 16 27 H 0.15 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.41 12.33 8.54 -92.71 -0.79 11.54 16 30 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 3.52 6.07 -2.39 -0.01 3.50 16 32 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -73.69 289.15 1.28 -72.41 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -1.57 Total: 23.41 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 3.84 Total: -4.25 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -2.97 Total: -105.84 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.05 Total: -28.88 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -73.69 1.28 -72.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061739.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.816 kcal (2) G-P(sol) polarization free energy of solvation -73.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds