Wall clock time and date at job start Sun Mar 29 2020 22:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29941 * 126.28718 * 2 1 4 4 O 1.21297 * 110.25100 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81397 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.55336 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.70552 * 165.37657 * 6 5 4 8 8 C 1.53624 * 109.66565 * 285.96907 * 6 5 4 9 9 C 1.53041 * 109.24426 * 174.54795 * 8 6 5 10 10 C 1.53035 * 109.53847 * 298.51239 * 9 8 6 11 11 C 1.53191 * 109.31516 * 61.36546 * 10 9 8 12 12 N 1.46928 * 109.58684 * 45.02321 * 6 5 4 13 13 C 1.36935 * 120.63265 * 6.62184 * 12 6 5 14 14 H 1.08001 * 119.99680 * 324.34960 * 13 12 6 15 15 C 1.38816 * 119.99965 * 144.34181 * 13 12 6 16 16 N 1.31613 * 119.99717 * 147.22103 * 15 13 12 17 17 Si 1.86799 * 119.99971 * 327.22194 * 15 13 12 18 18 H 1.48503 * 109.46848 * 275.65665 * 17 15 13 19 19 H 1.48501 * 109.47330 * 35.65355 * 17 15 13 20 20 H 1.48492 * 109.46990 * 155.65523 * 17 15 13 21 21 N 1.31129 * 106.89385 * 0.22111 * 5 4 3 22 22 H 1.08995 * 109.47038 * 89.97159 * 1 2 3 23 23 H 1.09001 * 109.46743 * 209.97081 * 1 2 3 24 24 H 1.08994 * 109.46852 * 329.96870 * 1 2 3 25 25 H 1.09003 * 109.63249 * 54.55583 * 8 6 5 26 26 H 1.08996 * 109.45703 * 294.43317 * 8 6 5 27 27 H 1.08993 * 109.45851 * 178.48972 * 9 8 6 28 28 H 1.09003 * 109.44359 * 58.52375 * 9 8 6 29 29 H 1.09000 * 109.49728 * 301.41106 * 10 9 8 30 30 H 1.08997 * 109.52519 * 181.32968 * 10 9 8 31 31 H 1.08998 * 109.59007 * 185.57658 * 11 10 9 32 32 H 1.09003 * 109.70691 * 65.21617 * 11 10 9 33 33 H 0.96996 * 119.99782 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0015 6 6 4.7969 -1.4370 -0.0029 7 1 4.5686 -2.4710 0.2557 8 6 5.4461 -1.3813 -1.3941 9 6 6.7978 -2.0976 -1.3490 10 6 7.7215 -1.3857 -0.3580 11 6 7.0999 -1.4377 1.0411 12 7 5.7414 -0.8816 0.9761 13 6 5.3612 0.1311 1.8156 14 1 4.6838 0.8964 1.4663 15 6 5.8462 0.1741 3.1156 16 7 6.0555 1.3337 3.7018 17 14 6.2017 -1.4139 4.0327 18 1 4.9502 -1.9181 4.6530 19 1 6.7265 -2.4275 3.0827 20 1 7.2110 -1.1586 5.0916 21 7 2.3030 -1.0841 -0.0063 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8903 0.5134 24 1 -0.3633 0.8897 0.5143 25 1 5.5947 -0.3421 -1.6876 26 1 4.7970 -1.8744 -2.1176 27 1 7.2494 -2.0835 -2.3409 28 1 6.6510 -3.1299 -1.0314 29 1 7.8487 -0.3465 -0.6613 30 1 8.6919 -1.8818 -0.3436 31 1 7.7034 -0.8481 1.7313 32 1 7.0556 -2.4709 1.3855 33 1 6.3940 1.3637 4.6103 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285543552.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:20 Heat of formation + Delta-G solvation = 91.090473 kcal Electronic energy + Delta-G solvation = -17607.752506 eV Core-core repulsion = 14865.678273 eV Total energy + Delta-G solvation = -2742.074233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.87455 -38.04267 -35.41549 -33.21624 -32.92719 -30.89158 -30.14345 -28.56779 -25.58438 -23.73877 -22.64036 -22.41131 -20.70318 -19.33228 -17.60610 -17.20685 -16.08010 -15.34908 -14.62794 -14.33381 -13.76832 -13.56981 -13.51100 -13.28092 -13.01237 -12.67351 -12.41087 -12.02071 -11.83832 -11.66246 -11.00955 -10.93789 -10.68643 -10.55447 -10.46972 -10.35702 -9.96411 -9.86874 -9.54384 -9.13072 -8.46258 -7.01213 -6.11604 -3.46331 1.84363 2.79493 3.35156 3.45891 3.49667 3.58987 4.10764 4.50408 4.54722 4.91568 5.15973 5.25897 5.33796 5.39511 5.55436 5.60715 5.70367 5.77572 5.89125 5.98212 6.11387 6.21403 6.33686 6.39078 6.42853 6.47966 6.53271 6.63658 6.80260 6.96420 7.88221 8.27526 8.75700 8.93711 9.59928 9.98606 11.02271 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.011634 C = 0.008594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.775035 B = 2406.097509 C = 3257.340624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.150 3.850 3 N -0.397 5.397 4 O 0.105 5.895 5 C 0.230 3.770 6 C 0.256 3.744 7 H 0.077 0.923 8 C -0.129 4.129 9 C -0.107 4.107 10 C -0.141 4.141 11 C 0.146 3.854 12 N -0.596 5.596 13 C -0.297 4.297 14 H 0.091 0.909 15 C 0.053 3.947 16 N -0.876 5.876 17 Si 0.840 3.160 18 H -0.289 1.289 19 H -0.251 1.251 20 H -0.295 1.295 21 N -0.503 5.503 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 -6.339 -9.125 11.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.123 4.123 3 N -0.106 5.106 4 O 0.047 5.953 5 C 0.010 3.990 6 C 0.148 3.852 7 H 0.094 0.906 8 C -0.169 4.169 9 C -0.144 4.144 10 C -0.180 4.180 11 C 0.021 3.979 12 N -0.322 5.322 13 C -0.424 4.424 14 H 0.108 0.892 15 C -0.150 4.150 16 N -0.514 5.514 17 Si 0.667 3.333 18 H -0.216 1.216 19 H -0.176 1.176 20 H -0.221 1.221 21 N -0.238 5.238 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.242 -5.688 -8.961 11.098 hybrid contribution 0.251 -0.819 0.913 1.252 sum -2.991 -6.506 -8.048 10.773 Atomic orbital electron populations 1.19995 0.83769 1.04111 1.03421 1.25684 1.00133 0.84194 1.02258 1.74556 0.90227 1.24548 1.21252 1.85475 1.20932 1.24802 1.64110 1.28532 0.96086 0.81959 0.92415 1.19274 0.81179 0.92764 0.92012 0.90570 1.22090 0.97031 1.01891 0.95850 1.21362 0.94991 0.99049 0.99043 1.22100 0.97550 1.00806 0.97574 1.21454 0.84845 0.97048 0.94515 1.44327 1.06245 1.41840 1.39772 1.19007 1.31344 1.00582 0.91482 0.89235 1.25422 0.97238 0.95968 0.96376 1.70035 1.42646 1.24405 1.14350 0.87577 0.77753 0.87269 0.80729 1.21574 1.17553 1.22114 1.71784 0.99761 1.29617 1.22609 0.90049 0.89595 0.89991 0.91025 0.92001 0.92445 0.92276 0.91562 0.92591 0.90957 0.94911 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.73 10.51 36.01 0.38 -0.35 16 2 C 0.15 2.87 8.22 -156.38 -1.28 1.59 16 3 N -0.40 -8.57 12.16 30.89 0.38 -8.19 16 4 O 0.10 2.39 8.66 18.10 0.16 2.55 16 5 C 0.23 4.87 6.39 -13.06 -0.08 4.79 16 6 C 0.26 5.01 3.45 -68.53 -0.24 4.77 16 7 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 8 C -0.13 -2.04 5.38 -26.39 -0.14 -2.18 16 9 C -0.11 -1.51 5.88 -26.69 -0.16 -1.66 16 10 C -0.14 -2.27 6.08 -26.61 -0.16 -2.43 16 11 C 0.15 2.94 4.39 -3.71 -0.02 2.92 16 12 N -0.60 -13.52 2.58 -165.82 -0.43 -13.95 16 13 C -0.30 -8.07 8.88 -15.06 -0.13 -8.20 16 14 H 0.09 2.66 5.22 -52.49 -0.27 2.39 16 15 C 0.05 1.50 4.86 -17.43 -0.08 1.42 16 16 N -0.88 -26.23 13.97 55.49 0.78 -25.45 16 17 Si 0.84 20.81 26.96 -169.99 -4.58 16.23 16 18 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.25 -5.69 4.69 56.52 0.27 -5.42 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 N -0.50 -10.23 11.55 -9.88 -0.11 -10.35 16 22 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.59 6.40 -51.93 -0.33 1.25 16 32 H 0.03 0.65 6.50 -51.93 -0.34 0.31 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 266.68 15.07 4.02 4.02 Total: -1.00 -31.08 266.68 -6.16 -37.24 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -4.44 Total: -2.75 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.92 Total: 0.66 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.61 Total: -57.94 kcal Atomic # 8 Polarization: 2.39 SS G_CDS: 0.16 Total: 2.55 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.58 Total: 16.23 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.08 -6.16 -37.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285543552.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.330 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds