Wall clock time and date at job start Sun Mar 29 2020 22:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29941 * 126.28718 * 2 1 4 4 O 1.21297 * 110.25100 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81397 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.55336 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.70552 * 165.37657 * 6 5 4 8 8 C 1.53624 * 109.66565 * 285.96907 * 6 5 4 9 9 C 1.53041 * 109.24426 * 174.54795 * 8 6 5 10 10 C 1.53035 * 109.53847 * 298.51239 * 9 8 6 11 11 C 1.53191 * 109.31516 * 61.36546 * 10 9 8 12 12 N 1.46928 * 109.58684 * 45.02321 * 6 5 4 13 13 C 1.36935 * 120.63265 * 6.62184 * 12 6 5 14 14 H 1.08001 * 119.99680 * 324.34960 * 13 12 6 15 15 C 1.38816 * 119.99965 * 144.34181 * 13 12 6 16 16 N 1.31613 * 119.99717 * 147.22103 * 15 13 12 17 17 Si 1.86799 * 119.99971 * 327.22194 * 15 13 12 18 18 H 1.48503 * 109.46848 * 275.65665 * 17 15 13 19 19 H 1.48501 * 109.47330 * 35.65355 * 17 15 13 20 20 H 1.48492 * 109.46990 * 155.65523 * 17 15 13 21 21 N 1.31129 * 106.89385 * 0.22111 * 5 4 3 22 22 H 1.08995 * 109.47038 * 89.97159 * 1 2 3 23 23 H 1.09001 * 109.46743 * 209.97081 * 1 2 3 24 24 H 1.08994 * 109.46852 * 329.96870 * 1 2 3 25 25 H 1.09003 * 109.63249 * 54.55583 * 8 6 5 26 26 H 1.08996 * 109.45703 * 294.43317 * 8 6 5 27 27 H 1.08993 * 109.45851 * 178.48972 * 9 8 6 28 28 H 1.09003 * 109.44359 * 58.52375 * 9 8 6 29 29 H 1.09000 * 109.49728 * 301.41106 * 10 9 8 30 30 H 1.08997 * 109.52519 * 181.32968 * 10 9 8 31 31 H 1.08998 * 109.59007 * 185.57658 * 11 10 9 32 32 H 1.09003 * 109.70691 * 65.21617 * 11 10 9 33 33 H 0.96996 * 119.99782 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0015 6 6 4.7969 -1.4370 -0.0029 7 1 4.5686 -2.4710 0.2557 8 6 5.4461 -1.3813 -1.3941 9 6 6.7978 -2.0976 -1.3490 10 6 7.7215 -1.3857 -0.3580 11 6 7.0999 -1.4377 1.0411 12 7 5.7414 -0.8816 0.9761 13 6 5.3612 0.1311 1.8156 14 1 4.6838 0.8964 1.4663 15 6 5.8462 0.1741 3.1156 16 7 6.0555 1.3337 3.7018 17 14 6.2017 -1.4139 4.0327 18 1 4.9502 -1.9181 4.6530 19 1 6.7265 -2.4275 3.0827 20 1 7.2110 -1.1586 5.0916 21 7 2.3030 -1.0841 -0.0063 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8903 0.5134 24 1 -0.3633 0.8897 0.5143 25 1 5.5947 -0.3421 -1.6876 26 1 4.7970 -1.8744 -2.1176 27 1 7.2494 -2.0835 -2.3409 28 1 6.6510 -3.1299 -1.0314 29 1 7.8487 -0.3465 -0.6613 30 1 8.6919 -1.8818 -0.3436 31 1 7.7034 -0.8481 1.7313 32 1 7.0556 -2.4709 1.3855 33 1 6.3940 1.3637 4.6103 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285543552.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:20 Heat of formation + Delta-G solvation = 68.799273 kcal Electronic energy + Delta-G solvation = -17608.719125 eV Core-core repulsion = 14865.678273 eV Total energy + Delta-G solvation = -2743.040852 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.45822 -39.57093 -36.96186 -34.99503 -34.46034 -32.71352 -31.55673 -29.89303 -27.34882 -25.29666 -24.16898 -24.07916 -22.14115 -20.84113 -19.35062 -18.87929 -17.73386 -17.14516 -16.18378 -16.04563 -15.31215 -14.95391 -14.87440 -14.67809 -14.37278 -14.27553 -13.92220 -13.54212 -13.40482 -13.11668 -12.70231 -12.52610 -12.49189 -12.12576 -11.96862 -11.72434 -11.54916 -11.36433 -11.25012 -10.76842 -10.49717 -8.87150 -8.25704 -5.55876 0.22743 1.26975 1.35780 1.44734 1.50764 2.00452 2.44665 2.64220 2.97524 3.17079 3.40506 3.91032 4.01877 4.12236 4.34754 4.38194 4.46812 4.59224 4.60000 4.71085 4.77814 4.93479 5.00924 5.04116 5.12100 5.15358 5.26853 5.27087 5.34634 5.62765 5.87901 6.20065 6.87748 7.25054 7.55309 7.98220 8.92595 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.011634 C = 0.008594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.775035 B = 2406.097509 C = 3257.340624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.157 3.843 3 N -0.426 5.426 4 O 0.068 5.932 5 C 0.220 3.780 6 C 0.250 3.750 7 H 0.093 0.907 8 C -0.121 4.121 9 C -0.100 4.100 10 C -0.134 4.134 11 C 0.138 3.862 12 N -0.608 5.608 13 C -0.281 4.281 14 H 0.055 0.945 15 C -0.004 4.004 16 N -0.931 5.931 17 Si 0.900 3.100 18 H -0.304 1.304 19 H -0.214 1.214 20 H -0.299 1.299 21 N -0.509 5.509 22 H 0.111 0.889 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 -9.127 -10.827 14.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.116 4.116 3 N -0.141 5.141 4 O 0.017 5.983 5 C 0.000 4.000 6 C 0.143 3.857 7 H 0.110 0.890 8 C -0.161 4.161 9 C -0.138 4.138 10 C -0.173 4.173 11 C 0.014 3.986 12 N -0.335 5.335 13 C -0.410 4.410 14 H 0.072 0.928 15 C -0.203 4.203 16 N -0.573 5.573 17 Si 0.726 3.274 18 H -0.232 1.232 19 H -0.137 1.137 20 H -0.226 1.226 21 N -0.245 5.245 22 H 0.129 0.871 23 H 0.121 0.879 24 H 0.111 0.889 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.260 -8.521 -10.706 14.066 hybrid contribution 0.167 0.080 1.351 1.364 sum -3.093 -8.441 -9.354 12.974 Atomic orbital electron populations 1.20321 0.79752 1.05456 1.05749 1.26751 1.02282 0.83210 0.99350 1.74555 0.90157 1.25831 1.23544 1.85433 1.21818 1.25710 1.65298 1.29060 0.97155 0.81742 0.92013 1.19653 0.80258 0.92664 0.93154 0.89008 1.22064 0.98548 1.01734 0.93712 1.21384 0.93120 0.99172 1.00102 1.22006 0.99287 1.00731 0.95252 1.21568 0.83381 0.96730 0.96890 1.44411 1.08116 1.41469 1.39534 1.18910 1.29356 1.00696 0.92013 0.92804 1.26001 0.98400 0.98522 0.97343 1.70145 1.45830 1.26626 1.14678 0.86608 0.76735 0.84256 0.79759 1.23191 1.13684 1.22618 1.71823 0.99602 1.29994 1.23086 0.87070 0.87904 0.88923 0.92653 0.89349 0.89281 0.90433 0.93232 0.89474 0.93529 0.93522 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.32 10.51 71.24 0.75 -0.58 16 2 C 0.16 5.88 8.22 138.46 1.14 7.02 16 3 N -0.43 -18.72 12.16 -60.35 -0.73 -19.46 16 4 O 0.07 3.23 8.66 74.85 0.65 3.87 16 5 C 0.22 9.29 6.39 88.38 0.56 9.86 16 6 C 0.25 9.38 3.45 44.37 0.15 9.54 16 7 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 8 C -0.12 -3.50 5.38 30.82 0.17 -3.33 16 9 C -0.10 -2.38 5.88 30.62 0.18 -2.20 16 10 C -0.13 -3.88 6.08 30.67 0.19 -3.70 16 11 C 0.14 5.28 4.39 86.36 0.38 5.66 16 12 N -0.61 -27.21 2.58 -678.55 -1.75 -28.96 16 13 C -0.28 -15.66 8.88 84.03 0.75 -14.91 16 14 H 0.05 3.38 5.22 -2.91 -0.02 3.37 16 15 C 0.00 -0.23 4.86 84.86 0.41 0.19 16 16 N -0.93 -58.19 13.97 21.65 0.30 -57.89 16 17 Si 0.90 43.54 26.96 68.60 1.85 45.39 16 18 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 19 H -0.21 -8.93 4.69 99.48 0.47 -8.47 16 20 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 21 N -0.51 -20.22 11.55 -303.23 -3.50 -23.73 16 22 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 2.01 6.40 -2.39 -0.02 1.99 16 32 H 0.05 1.66 6.50 -2.39 -0.02 1.65 16 33 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -70.65 266.68 2.36 -68.29 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 0.87 Total: 4.94 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 4.67 Total: 7.54 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -5.68 Total: -130.03 kcal Atomic # 8 Polarization: 3.23 SS G_CDS: 0.65 Total: 3.87 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.85 Total: 45.39 kcal Total: -70.65 2.36 -68.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285543552.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.090 kcal (2) G-P(sol) polarization free energy of solvation -70.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds