Wall clock time and date at job start Sun Mar 29 2020 21:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.50709 * 109.47273 * 270.00327 * 3 2 1 5 5 C 1.34511 * 125.78974 * 89.99759 * 4 3 2 6 6 C 1.41377 * 106.84137 * 180.02562 * 5 4 3 7 7 C 1.34516 * 106.84038 * 359.97438 * 6 5 4 8 8 O 1.34296 * 125.78829 * 269.69222 * 4 3 2 9 9 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 10 10 O 1.21283 * 120.00463 * 179.97438 * 9 2 1 11 11 C 1.50700 * 119.99675 * 359.72090 * 9 2 1 12 12 C 1.53004 * 109.47208 * 180.27843 * 11 9 2 13 13 C 1.50700 * 109.47208 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99770 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99720 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00078 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99915 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46986 * 89.99876 * 17 15 13 19 19 H 1.48492 * 109.47096 * 210.00138 * 17 15 13 20 20 H 1.48506 * 109.46749 * 330.00135 * 17 15 13 21 21 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 22 22 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 23 23 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 24 24 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 25 25 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 26 26 H 1.08000 * 126.58052 * 0.03583 * 5 4 3 27 27 H 1.08008 * 126.58059 * 179.97438 * 6 5 4 28 28 H 1.08000 * 125.78556 * 180.02562 * 7 6 5 29 29 H 1.09009 * 109.47352 * 300.27556 * 11 9 2 30 30 H 1.08998 * 109.47585 * 60.27844 * 11 9 2 31 31 H 1.09000 * 109.46887 * 300.00372 * 12 11 9 32 32 H 1.08998 * 109.46846 * 59.99549 * 12 11 9 33 33 H 0.97008 * 119.99515 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 6 1.6348 2.4765 -2.1625 6 6 2.2549 2.6325 -3.4234 7 6 3.4109 1.9463 -3.3767 8 8 3.5257 1.3906 -2.1594 9 6 2.1389 -1.1672 -0.0005 10 8 3.3517 -1.1672 -0.0010 11 6 1.3854 -2.4723 0.0053 12 6 2.3797 -3.6352 0.0104 13 6 1.6262 -4.9403 0.0155 14 1 0.5462 -4.9403 0.0156 15 6 2.3157 -6.1343 0.0201 16 7 3.6308 -6.1342 0.0206 17 14 1.3817 -7.7521 0.0272 18 1 1.1336 -8.1865 -1.3710 19 1 2.1846 -8.7840 0.7312 20 1 0.0844 -7.5716 0.7271 21 1 -0.3633 0.0000 1.0276 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 1.6084 2.0283 0.5138 25 1 3.1500 1.1384 0.5137 26 1 0.6891 2.8971 -1.8539 27 1 1.8736 3.1948 -4.2630 28 1 4.1274 1.8608 -4.1802 29 1 0.7588 -2.5261 0.8956 30 1 0.7587 -2.5340 -0.8844 31 1 3.0064 -3.5813 -0.8798 32 1 3.0064 -3.5735 0.9001 33 1 4.1158 -6.9744 0.0235 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290941990.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:14 Heat of formation + Delta-G solvation = -25.396411 kcal Electronic energy + Delta-G solvation = -16432.532772 eV Core-core repulsion = 13653.114538 eV Total energy + Delta-G solvation = -2779.418234 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.48819 -39.33641 -35.45607 -33.49805 -32.92300 -31.49668 -30.28742 -27.13262 -26.30286 -24.68918 -21.71166 -21.57993 -20.42336 -18.62673 -17.38741 -16.91560 -16.30359 -15.66541 -15.48243 -15.25415 -14.40343 -14.25591 -13.37664 -13.03299 -12.86323 -12.72942 -12.65263 -12.29238 -12.17952 -12.07495 -11.63191 -11.09791 -10.91705 -10.57737 -9.93535 -9.90659 -9.61905 -9.21835 -9.05212 -8.62619 -8.40792 -8.30267 -5.94333 -3.98815 1.71339 2.56877 2.99596 3.29305 3.34471 3.39853 3.42175 3.45500 4.48354 4.71424 4.88676 5.01379 5.13140 5.17985 5.39046 5.40556 5.52002 5.65334 5.74737 5.79192 5.89190 6.11743 6.22922 6.24335 6.49507 6.64216 6.88792 7.21239 7.67806 7.76117 7.88098 8.08986 8.39835 8.72095 9.09530 9.64613 11.16663 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038416 B = 0.005015 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.680040 B = 5582.398564 C = 5823.273278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.627 5.627 3 C 0.191 3.809 4 C -0.020 4.020 5 C -0.208 4.208 6 C -0.221 4.221 7 C -0.039 4.039 8 O -0.161 6.161 9 C 0.510 3.490 10 O -0.523 6.523 11 C -0.126 4.126 12 C 0.036 3.964 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.200 0.800 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.800 17.964 -3.059 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.364 5.364 3 C 0.067 3.933 4 C -0.073 4.073 5 C -0.228 4.228 6 C -0.241 4.241 7 C -0.107 4.107 8 O -0.055 6.055 9 C 0.300 3.700 10 O -0.397 6.397 11 C -0.166 4.166 12 C -0.001 4.001 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.123 0.877 25 H 0.117 0.883 26 H 0.163 0.837 27 H 0.163 0.837 28 H 0.217 0.783 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.734 17.628 -2.922 18.766 hybrid contribution -0.730 -0.678 -0.378 1.065 sum -6.464 16.950 -3.300 18.439 Atomic orbital electron populations 1.21772 0.79415 1.03264 1.01744 1.48181 1.06957 1.05236 1.75998 1.19719 0.99445 0.86551 0.87549 1.23092 0.87420 1.00554 0.96196 1.21552 1.01886 1.04782 0.94595 1.21782 0.97040 1.05964 0.99269 1.24100 1.00517 0.99067 0.87054 1.84159 1.39890 1.59124 1.22351 1.21705 0.88551 0.85519 0.74213 1.90682 1.14340 1.87084 1.47609 1.21891 1.00697 0.91706 1.02313 1.18919 0.93202 0.89400 0.98626 1.21211 0.92899 0.90987 1.51381 0.92616 1.25024 0.94815 0.99211 0.95310 1.70005 1.06066 1.26559 1.50200 0.86592 0.79773 0.83533 0.78053 1.20690 1.21217 1.19873 0.92504 0.91647 0.90375 0.87700 0.88292 0.83728 0.83678 0.78349 0.90139 0.90276 0.95874 0.95787 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.24 59.84 0.61 1.49 16 2 N -0.63 -9.42 2.86 -182.96 -0.52 -9.95 16 3 C 0.19 2.51 5.94 -5.19 -0.03 2.48 16 4 C -0.02 -0.29 6.90 -35.62 -0.25 -0.54 16 5 C -0.21 -2.50 10.81 -39.71 -0.43 -2.93 16 6 C -0.22 -2.57 10.91 -39.70 -0.43 -3.00 16 7 C -0.04 -0.49 12.09 29.42 0.36 -0.13 16 8 O -0.16 -2.63 10.65 5.73 0.06 -2.57 16 9 C 0.51 10.29 7.67 -10.98 -0.08 10.21 16 10 O -0.52 -12.80 15.56 5.55 0.09 -12.71 16 11 C -0.13 -2.64 4.19 -27.88 -0.12 -2.76 16 12 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 13 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 23 H 0.08 0.87 6.45 -51.93 -0.33 0.53 16 24 H 0.10 0.95 8.07 -51.93 -0.42 0.53 16 25 H 0.10 1.46 7.42 -51.93 -0.39 1.08 16 26 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 28 H 0.20 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.08 1.52 8.11 -51.92 -0.42 1.10 16 30 H 0.08 1.53 7.41 -51.93 -0.38 1.14 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 290.88 15.07 4.38 4.38 Total: -1.00 -35.81 290.88 -5.62 -41.43 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -4.44 Total: -2.25 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.90 Total: -8.12 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.21 Total: -36.95 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.15 Total: -15.28 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.81 -5.62 -41.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290941990.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.034 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds