Wall clock time and date at job start Sun Mar 29 2020 21:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.50709 * 109.47273 * 270.00327 * 3 2 1 5 5 C 1.34511 * 125.78974 * 89.99759 * 4 3 2 6 6 C 1.41377 * 106.84137 * 180.02562 * 5 4 3 7 7 C 1.34516 * 106.84038 * 359.97438 * 6 5 4 8 8 O 1.34296 * 125.78829 * 269.69222 * 4 3 2 9 9 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 10 10 O 1.21283 * 120.00463 * 179.97438 * 9 2 1 11 11 C 1.50700 * 119.99675 * 359.72090 * 9 2 1 12 12 C 1.53004 * 109.47208 * 180.27843 * 11 9 2 13 13 C 1.50700 * 109.47208 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99770 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99720 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00078 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99915 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46986 * 89.99876 * 17 15 13 19 19 H 1.48492 * 109.47096 * 210.00138 * 17 15 13 20 20 H 1.48506 * 109.46749 * 330.00135 * 17 15 13 21 21 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 22 22 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 23 23 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 24 24 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 25 25 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 26 26 H 1.08000 * 126.58052 * 0.03583 * 5 4 3 27 27 H 1.08008 * 126.58059 * 179.97438 * 6 5 4 28 28 H 1.08000 * 125.78556 * 180.02562 * 7 6 5 29 29 H 1.09009 * 109.47352 * 300.27556 * 11 9 2 30 30 H 1.08998 * 109.47585 * 60.27844 * 11 9 2 31 31 H 1.09000 * 109.46887 * 300.00372 * 12 11 9 32 32 H 1.08998 * 109.46846 * 59.99549 * 12 11 9 33 33 H 0.97008 * 119.99515 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 6 1.6348 2.4765 -2.1625 6 6 2.2549 2.6325 -3.4234 7 6 3.4109 1.9463 -3.3767 8 8 3.5257 1.3906 -2.1594 9 6 2.1389 -1.1672 -0.0005 10 8 3.3517 -1.1672 -0.0010 11 6 1.3854 -2.4723 0.0053 12 6 2.3797 -3.6352 0.0104 13 6 1.6262 -4.9403 0.0155 14 1 0.5462 -4.9403 0.0156 15 6 2.3157 -6.1343 0.0201 16 7 3.6308 -6.1342 0.0206 17 14 1.3817 -7.7521 0.0272 18 1 1.1336 -8.1865 -1.3710 19 1 2.1846 -8.7840 0.7312 20 1 0.0844 -7.5716 0.7271 21 1 -0.3633 0.0000 1.0276 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 1.6084 2.0283 0.5138 25 1 3.1500 1.1384 0.5137 26 1 0.6891 2.8971 -1.8539 27 1 1.8736 3.1948 -4.2630 28 1 4.1274 1.8608 -4.1802 29 1 0.7588 -2.5261 0.8956 30 1 0.7587 -2.5340 -0.8844 31 1 3.0064 -3.5813 -0.8798 32 1 3.0064 -3.5735 0.9001 33 1 4.1158 -6.9744 0.0235 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290941990.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:14 Heat of formation + Delta-G solvation = -49.990945 kcal Electronic energy + Delta-G solvation = -16433.599271 eV Core-core repulsion = 13653.114538 eV Total energy + Delta-G solvation = -2780.484733 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.48700 -40.82279 -36.80718 -35.60952 -33.93682 -33.22075 -31.63841 -28.27047 -27.87100 -26.20597 -23.46259 -22.64416 -21.52545 -20.07359 -18.81288 -18.37606 -17.64733 -17.28740 -16.76113 -16.56595 -16.33863 -15.51830 -14.76823 -14.43654 -14.15496 -13.85548 -13.75007 -13.67353 -13.51892 -13.31641 -13.03491 -12.80751 -12.69225 -12.43141 -11.93495 -11.59609 -11.31648 -10.89060 -10.74774 -10.57620 -9.82930 -9.43170 -8.18336 -6.33068 0.70665 1.41999 1.45254 1.56231 1.60036 1.68377 2.16798 2.29601 2.44098 3.14609 3.73169 3.82367 4.14774 4.16172 4.30335 4.34301 4.46617 4.49825 4.50906 4.80689 4.90862 4.93572 4.99496 5.10014 5.19206 5.46028 5.54038 5.60299 5.65367 5.83714 6.16096 6.22288 6.37065 6.85217 7.22778 7.37525 8.94636 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038416 B = 0.005015 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.680040 B = 5582.398564 C = 5823.273278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.614 5.614 3 C 0.189 3.811 4 C -0.057 4.057 5 C -0.191 4.191 6 C -0.222 4.222 7 C -0.058 4.058 8 O -0.206 6.206 9 C 0.505 3.495 10 O -0.584 6.584 11 C -0.113 4.113 12 C 0.042 3.958 13 C -0.542 4.542 14 H 0.078 0.922 15 C -0.008 4.008 16 N -0.939 5.939 17 Si 0.976 3.024 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.253 1.253 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.075 0.925 24 H 0.155 0.845 25 H 0.070 0.930 26 H 0.179 0.821 27 H 0.175 0.825 28 H 0.223 0.777 29 H 0.107 0.893 30 H 0.100 0.900 31 H -0.024 1.024 32 H -0.018 1.018 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.379 19.005 -3.432 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.348 5.348 3 C 0.067 3.933 4 C -0.108 4.108 5 C -0.211 4.211 6 C -0.241 4.241 7 C -0.125 4.125 8 O -0.102 6.102 9 C 0.295 3.705 10 O -0.463 6.463 11 C -0.153 4.153 12 C 0.004 3.996 13 C -0.580 4.580 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.800 3.200 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.177 1.177 21 H 0.099 0.901 22 H 0.117 0.883 23 H 0.094 0.906 24 H 0.173 0.827 25 H 0.089 0.911 26 H 0.196 0.804 27 H 0.193 0.807 28 H 0.240 0.760 29 H 0.125 0.875 30 H 0.118 0.882 31 H -0.005 1.005 32 H 0.000 1.000 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.391 18.727 -3.296 21.208 hybrid contribution 0.387 -0.882 -0.307 1.011 sum -9.004 17.845 -3.603 20.310 Atomic orbital electron populations 1.22149 0.76198 1.04864 1.03847 1.48121 1.08854 1.04288 1.73513 1.19995 0.99029 0.86521 0.87796 1.23365 0.88051 1.02564 0.96809 1.21972 1.02266 1.02841 0.94002 1.22223 0.96357 1.05405 1.00080 1.24813 1.01977 0.99092 0.86618 1.84132 1.41529 1.60584 1.24000 1.21539 0.87758 0.86993 0.74210 1.90661 1.16774 1.88061 1.50835 1.21637 0.99208 0.89936 1.04505 1.18701 0.93714 0.92703 0.94449 1.21699 0.94016 0.91454 1.50845 0.90433 1.26173 0.95711 1.04069 0.94540 1.70196 1.08443 1.27833 1.51473 0.85287 0.78714 0.77512 0.78522 1.19737 1.21163 1.17654 0.90084 0.88314 0.90612 0.82714 0.91120 0.80357 0.80736 0.76037 0.87480 0.88198 1.00513 0.99965 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 10.24 127.77 1.31 2.55 16 2 N -0.61 -17.59 2.86 -851.14 -2.43 -20.03 16 3 C 0.19 4.78 5.94 85.64 0.51 5.29 16 4 C -0.06 -1.58 6.90 24.84 0.17 -1.40 16 5 C -0.19 -4.00 10.81 22.19 0.24 -3.76 16 6 C -0.22 -4.59 10.91 22.19 0.24 -4.34 16 7 C -0.06 -1.42 12.09 66.97 0.81 -0.61 16 8 O -0.21 -6.93 10.65 -2.42 -0.03 -6.96 16 9 C 0.50 20.86 7.67 87.66 0.67 21.53 16 10 O -0.58 -30.60 15.56 -3.04 -0.05 -30.65 16 11 C -0.11 -4.75 4.19 29.85 0.13 -4.62 16 12 C 0.04 2.42 4.26 29.85 0.13 2.55 16 13 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 14 H 0.08 4.06 7.74 -2.91 -0.02 4.03 16 15 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 16 N -0.94 -60.78 13.29 21.45 0.28 -60.49 16 17 Si 0.98 44.70 29.54 68.60 2.03 46.73 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.25 -10.66 7.11 99.48 0.71 -9.95 16 21 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.10 1.14 8.07 -2.39 -0.02 1.12 16 23 H 0.08 1.41 6.45 -2.39 -0.02 1.40 16 24 H 0.16 2.25 8.07 -2.39 -0.02 2.23 16 25 H 0.07 2.19 7.42 -2.39 -0.02 2.17 16 26 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 27 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 28 H 0.22 3.87 8.06 -2.91 -0.02 3.84 16 29 H 0.11 3.88 8.11 -2.38 -0.02 3.86 16 30 H 0.10 3.74 7.41 -2.39 -0.02 3.72 16 31 H -0.02 -1.55 8.10 -2.39 -0.02 -1.57 16 32 H -0.02 -1.18 8.10 -2.39 -0.02 -1.19 16 33 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 Total: -1.00 -84.09 290.88 5.80 -78.29 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.09 Total: 7.11 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.90 Total: -14.00 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -2.15 Total: -80.52 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.07 Total: -37.61 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -84.09 5.80 -78.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290941990.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.304 kcal (2) G-P(sol) polarization free energy of solvation -84.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds