Wall clock time and date at job start Sun Mar 29 2020 22:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 N 1.46894 * 109.46935 * 239.99701 * 2 1 3 5 5 C 1.46900 * 110.99856 * 60.00096 * 4 2 1 6 6 C 1.50707 * 109.47353 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99634 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00413 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99946 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00280 * 180.02562 * 8 6 5 11 11 H 1.48511 * 109.46801 * 60.00225 * 10 8 6 12 12 H 1.48495 * 109.47100 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47209 * 300.00571 * 10 8 6 14 14 C 1.50699 * 109.46964 * 119.99730 * 2 1 3 15 15 C 1.38219 * 120.00977 * 119.99795 * 14 2 1 16 16 C 1.38227 * 120.02402 * 179.74165 * 15 14 2 17 17 C 1.38262 * 120.05195 * 0.25898 * 16 15 14 18 18 C 1.38177 * 120.02487 * 359.97438 * 17 16 15 19 19 C 1.38438 * 120.01661 * 300.25566 * 14 2 1 20 20 F 1.35104 * 120.02404 * 359.97438 * 19 14 2 21 21 H 1.09007 * 109.47538 * 299.99803 * 1 2 3 22 22 H 1.08998 * 109.47557 * 59.99884 * 1 2 3 23 23 H 1.09001 * 109.47645 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46998 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.46878 * 299.99978 * 3 2 1 26 26 H 1.08997 * 109.47364 * 59.99966 * 3 2 1 27 27 H 1.00892 * 111.00391 * 296.04506 * 4 2 1 28 28 H 1.08999 * 109.47702 * 299.99814 * 5 4 2 29 29 H 1.09003 * 109.47335 * 59.99898 * 5 4 2 30 30 H 0.96999 * 120.00026 * 180.02562 * 9 8 6 31 31 H 1.08002 * 119.99072 * 0.02773 * 15 14 2 32 32 H 1.07998 * 119.97011 * 180.23492 * 16 15 14 33 33 H 1.08004 * 119.99089 * 179.97438 * 17 16 15 34 34 H 1.07999 * 120.01221 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 1.5486 -0.0264 -2.4210 6 6 2.0701 -0.7631 -3.6279 7 1 2.6892 -1.6387 -3.5001 8 6 1.7561 -0.3198 -4.8951 9 7 1.0018 0.7463 -5.0507 10 14 2.4020 -1.2333 -6.3910 11 1 1.9071 -2.6333 -6.3678 12 1 1.9249 -0.5606 -7.6259 13 1 3.8868 -1.2327 -6.3684 14 6 2.0323 -0.7103 1.2305 15 6 2.8269 -1.8342 1.1040 16 6 3.2922 -2.4829 2.2324 17 6 2.9590 -2.0116 3.4888 18 6 2.1608 -0.8911 3.6178 19 6 1.6937 -0.2407 2.4880 20 9 0.9132 0.8550 2.6128 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.7502 -1.6648 -1.1908 28 1 0.4587 -0.0266 -2.4379 29 1 1.9120 1.0011 -2.4378 30 1 0.7805 1.0580 -5.9422 31 1 3.0882 -2.2030 0.1231 32 1 3.9161 -3.3587 2.1326 33 1 3.3228 -2.5195 4.3699 34 1 1.9010 -0.5229 4.5993 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298382666.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:00 Heat of formation + Delta-G solvation = -21.742173 kcal Electronic energy + Delta-G solvation = -16861.776014 eV Core-core repulsion = 14094.889029 eV Total energy + Delta-G solvation = -2766.886985 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.75549 -39.29026 -36.79632 -33.00980 -30.90286 -30.53520 -29.07438 -26.83091 -26.18228 -23.28594 -22.53192 -21.44007 -18.95236 -17.50104 -16.71041 -16.10710 -15.50043 -15.44402 -14.67487 -14.24835 -14.00705 -13.62028 -13.59131 -13.11528 -12.73587 -12.26687 -12.15530 -11.92470 -11.72445 -11.44762 -11.19126 -10.96044 -10.82061 -10.63871 -10.45274 -10.33810 -9.76922 -9.17490 -8.78495 -8.50432 -8.44087 -7.32110 -6.03144 -4.04737 1.31330 1.38874 3.33220 3.37405 3.40113 3.75798 4.39780 4.45106 4.81812 4.87423 5.07384 5.18402 5.32852 5.40335 5.52767 5.60895 5.67329 6.01385 6.11132 6.12813 6.19270 6.27804 6.34956 6.46085 6.57244 6.63454 6.70438 6.78339 7.06960 7.29964 7.45440 7.77359 8.12641 8.36476 8.58499 9.03600 9.59675 11.07849 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038617 B = 0.006082 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.886062 B = 4602.866511 C = 5134.650031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.148 3.852 3 C -0.137 4.137 4 N -0.677 5.677 5 C 0.190 3.810 6 C -0.515 4.515 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.898 3.102 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.276 1.276 14 C -0.091 4.091 15 C -0.076 4.076 16 C -0.134 4.134 17 C -0.105 4.105 18 C -0.161 4.161 19 C 0.097 3.903 20 F -0.138 7.138 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.328 0.672 28 H -0.006 1.006 29 H 0.034 0.966 30 H 0.262 0.738 31 H 0.147 0.853 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.770 -3.785 15.431 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.056 3.944 3 C -0.195 4.195 4 N -0.307 5.307 5 C 0.064 3.936 6 C -0.554 4.554 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.092 4.092 15 C -0.094 4.094 16 C -0.152 4.152 17 C -0.123 4.123 18 C -0.180 4.180 19 C 0.078 3.922 20 F -0.117 7.117 21 H 0.076 0.924 22 H 0.091 0.909 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.011 0.989 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.165 0.835 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.269 -3.284 15.270 15.783 hybrid contribution -0.792 -0.479 -0.834 1.246 sum 1.476 -3.764 14.436 14.992 Atomic orbital electron populations 1.22595 0.96748 1.01783 1.02885 1.19665 0.91964 0.94206 0.88538 1.21892 1.01521 0.94063 1.02016 1.60950 1.62782 1.05428 1.01581 1.19664 0.93592 0.95437 0.84908 1.21146 1.31304 1.12599 0.90312 0.92120 1.24965 0.95236 0.95191 0.99082 1.69949 1.37244 1.23706 1.22803 0.86558 0.79291 0.79719 0.81801 1.20318 1.21368 1.20186 1.20133 0.98972 0.96930 0.93204 1.21187 0.94752 0.93493 0.99949 1.21242 1.00947 1.00630 0.92371 1.20918 0.97834 0.95808 0.97774 1.21025 1.01502 0.97992 0.97460 1.17556 0.94755 0.86029 0.93901 1.91432 1.72255 1.51327 1.96644 0.92409 0.90938 0.93181 0.92255 0.91231 0.92720 0.85416 0.98862 0.94803 0.92869 0.83537 0.85658 0.85655 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.02 37.16 0.30 -2.95 16 2 C 0.15 2.71 0.69 -132.76 -0.09 2.62 16 3 C -0.14 -2.52 8.03 37.16 0.30 -2.23 16 4 N -0.68 -14.15 5.09 -102.40 -0.52 -14.68 16 5 C 0.19 4.86 4.65 -4.97 -0.02 4.83 16 6 C -0.51 -14.36 9.32 -34.44 -0.32 -14.69 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 10 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 14 C -0.09 -1.47 4.78 -104.56 -0.50 -1.97 16 15 C -0.08 -1.11 9.14 -39.59 -0.36 -1.47 16 16 C -0.13 -1.60 10.04 -39.58 -0.40 -2.00 16 17 C -0.11 -1.16 10.04 -39.59 -0.40 -1.56 16 18 C -0.16 -1.98 10.03 -39.52 -0.40 -2.38 16 19 C 0.10 1.45 6.79 -39.42 -0.27 1.18 16 20 F -0.14 -2.14 13.38 2.25 0.03 -2.11 16 21 H 0.06 0.96 6.29 -51.92 -0.33 0.63 16 22 H 0.07 1.43 6.40 -51.93 -0.33 1.10 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.07 1.38 6.40 -51.93 -0.33 1.05 16 26 H 0.05 0.91 6.33 -51.93 -0.33 0.58 16 27 H 0.33 6.56 7.55 -39.30 -0.30 6.27 16 28 H -0.01 -0.17 6.30 -51.93 -0.33 -0.50 16 29 H 0.03 0.93 6.30 -51.93 -0.33 0.61 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.15 2.21 6.41 -52.49 -0.34 1.88 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 278.17 15.07 4.19 4.19 Total: -1.00 -29.44 278.17 -7.11 -36.55 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.27 Total: 4.48 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -2.26 Total: -19.09 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.22 Total: -40.56 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.03 Total: -2.11 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.44 -7.11 -36.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298382666.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.808 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds