Wall clock time and date at job start Sun Mar 29 2020 22:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 6 6 N 1.46504 * 109.46883 * 180.02562 * 4 2 1 7 7 C 1.36932 * 120.00287 * 85.00233 * 6 4 2 8 8 H 1.08003 * 120.00064 * 359.97438 * 7 6 4 9 9 C 1.38811 * 120.00254 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00433 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 119.99710 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46996 * 90.00549 * 11 9 7 13 13 H 1.48504 * 109.46756 * 210.00372 * 11 9 7 14 14 H 1.48497 * 109.46870 * 330.00213 * 11 9 7 15 15 C 1.50701 * 109.47180 * 59.99852 * 4 2 1 16 16 C 1.38243 * 119.97170 * 79.72719 * 15 4 2 17 17 C 1.38197 * 120.01830 * 179.72421 * 16 15 4 18 18 C 1.38463 * 119.97919 * 0.52926 * 17 16 15 19 19 F 1.35100 * 120.02941 * 179.72830 * 18 17 16 20 20 C 1.38457 * 119.94646 * 359.74374 * 18 17 16 21 21 C 1.38200 * 119.97263 * 0.02562 * 20 18 17 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 0.97003 * 119.99624 * 264.99510 * 6 4 2 30 30 H 0.96993 * 120.00175 * 179.97438 * 10 9 7 31 31 H 1.07995 * 119.98999 * 359.97438 * 16 15 4 32 32 H 1.08009 * 120.01245 * 180.29644 * 17 16 15 33 33 H 1.07998 * 120.01583 * 179.97438 * 20 18 17 34 34 H 1.08002 * 119.98894 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1393 6 7 3.5050 -0.7208 1.2495 7 6 4.1892 0.3541 1.7510 8 1 3.6489 1.2017 2.1461 9 6 5.5774 0.3544 1.7518 10 7 6.2351 1.3877 2.2334 11 14 6.5120 -1.1120 1.0691 12 1 6.7603 -0.9093 -0.3809 13 1 7.8092 -1.2463 1.7795 14 1 5.7095 -2.3458 1.2663 15 6 1.5376 -2.1422 1.2492 16 6 2.1689 -3.0978 0.4750 17 6 1.7125 -4.4023 0.4786 18 6 0.6160 -4.7495 1.2495 19 9 0.1656 -6.0233 1.2495 20 6 -0.0188 -3.7903 2.0201 21 6 0.4422 -2.4874 2.0186 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 3.9903 -1.4819 0.8945 30 1 7.2050 1.3878 2.2342 31 1 3.0213 -2.8258 -0.1297 32 1 2.2087 -5.1499 -0.1226 33 1 -0.8744 -4.0598 2.6215 34 1 -0.0530 -1.7389 2.6193 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308829643.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:13 Heat of formation + Delta-G solvation = -18.887781 kcal Electronic energy + Delta-G solvation = -16863.804250 eV Core-core repulsion = 14097.041041 eV Total energy + Delta-G solvation = -2766.763209 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.77684 -39.37757 -36.40162 -33.13657 -31.32376 -30.95359 -29.97514 -26.35312 -25.60234 -23.16583 -22.26350 -21.28945 -19.36258 -17.99172 -17.33485 -16.10850 -15.48656 -15.40742 -14.81750 -14.29069 -13.99972 -13.88838 -13.41815 -13.14417 -12.73710 -12.55283 -12.31054 -11.92562 -11.64548 -11.54749 -11.10691 -10.89757 -10.82582 -10.59267 -10.28567 -10.19090 -10.01294 -9.50500 -8.96436 -8.94918 -8.30781 -7.32197 -5.80968 -3.16192 1.32696 1.38434 3.34129 3.36542 3.42883 3.76604 4.38975 4.55270 4.84765 4.97859 5.05623 5.22924 5.43948 5.46532 5.57520 5.57811 5.67352 5.95510 5.98426 6.10157 6.18649 6.24257 6.25149 6.37005 6.41121 6.46241 6.57517 6.71350 6.77762 7.03143 7.07338 7.33867 7.94644 8.37360 9.14905 9.87371 10.06525 11.36750 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.023249 B = 0.008355 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.081754 B = 3350.672160 C = 4178.708842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.221 3.779 5 H 0.066 0.934 6 N -0.744 5.744 7 C -0.239 4.239 8 H 0.095 0.905 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.877 3.123 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 C -0.073 4.073 16 C -0.085 4.085 17 C -0.152 4.152 18 C 0.079 3.921 19 F -0.148 7.148 20 C -0.153 4.153 21 C -0.087 4.087 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.032 0.968 29 H 0.361 0.639 30 H 0.260 0.740 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.204 -8.323 -3.658 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.198 4.198 4 C 0.112 3.888 5 H 0.084 0.916 6 N -0.387 5.387 7 C -0.369 4.369 8 H 0.113 0.887 9 C -0.189 4.189 10 N -0.578 5.578 11 Si 0.707 3.293 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.203 1.203 15 C -0.074 4.074 16 C -0.104 4.104 17 C -0.171 4.171 18 C 0.060 3.940 19 F -0.127 7.127 20 C -0.172 4.172 21 C -0.105 4.105 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.195 0.805 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.118 -8.135 -3.530 15.016 hybrid contribution 0.757 -1.307 -0.473 1.583 sum -11.361 -9.443 -4.002 15.305 Atomic orbital electron populations 1.21890 0.96632 1.00905 1.01002 1.21734 0.93863 0.97809 0.99327 1.21852 1.04488 0.94232 0.99259 1.19260 0.84826 0.88152 0.96567 0.91603 1.42869 1.00079 1.20642 1.75111 1.19053 0.89328 0.95754 1.32754 0.88684 1.24643 0.96169 0.97117 1.01006 1.69684 1.07075 1.29799 1.51287 0.86664 0.80034 0.83581 0.79015 1.21020 1.21712 1.20269 1.20510 0.94570 0.97394 0.94953 1.20893 0.99344 0.91637 0.98482 1.21097 0.96980 0.97812 1.01206 1.17665 0.96525 0.79011 1.00785 1.91459 1.88716 1.36885 1.95596 1.21059 1.01745 0.93250 1.01167 1.20912 0.96072 0.95188 0.98371 0.93539 0.93052 0.93187 0.92145 0.93714 0.89225 0.94938 0.80497 0.93021 0.85214 0.85206 0.85173 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.78 37.16 0.33 -1.66 16 2 C -0.11 -1.75 2.68 -90.62 -0.24 -1.99 16 3 C -0.14 -2.54 8.26 37.15 0.31 -2.24 16 4 C 0.22 4.01 2.23 -69.08 -0.15 3.86 16 5 H 0.07 1.24 7.94 -51.93 -0.41 0.83 16 6 N -0.74 -16.52 4.75 -54.55 -0.26 -16.78 16 7 C -0.24 -6.31 8.05 -15.06 -0.12 -6.43 16 8 H 0.10 2.67 7.62 -52.48 -0.40 2.27 16 9 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 10 N -0.93 -28.29 13.97 55.49 0.78 -27.52 16 11 Si 0.88 21.46 27.73 -169.99 -4.71 16.74 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 15 C -0.07 -1.16 4.05 -104.62 -0.42 -1.59 16 16 C -0.09 -1.32 9.05 -39.59 -0.36 -1.68 16 17 C -0.15 -2.15 10.03 -39.51 -0.40 -2.55 16 18 C 0.08 1.12 7.30 -39.42 -0.29 0.83 16 19 F -0.15 -2.08 17.27 2.25 0.04 -2.04 16 20 C -0.15 -2.00 10.03 -39.51 -0.40 -2.39 16 21 C -0.09 -1.20 8.70 -39.59 -0.34 -1.54 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.65 6.64 -51.93 -0.34 0.30 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.09 1.94 6.01 -51.93 -0.31 1.63 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.36 7.96 3.94 -40.82 -0.16 7.80 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.13 2.03 6.93 -52.49 -0.36 1.67 16 32 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.56 8.04 -52.49 -0.42 1.14 16 LS Contribution 281.37 15.07 4.24 4.24 Total: -1.00 -28.96 281.37 -6.65 -35.61 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.54 Total: 7.04 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -2.19 Total: -17.30 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.52 Total: -44.29 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.71 Total: 16.74 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.96 -6.65 -35.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308829643.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.725 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds