Wall clock time and date at job start Sun Mar 29 2020 21:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00370 * 2 1 4 4 C 1.50708 * 109.47080 * 180.02562 * 3 2 1 5 5 N 1.31788 * 119.08408 * 269.97919 * 4 3 2 6 6 C 1.32544 * 121.01021 * 180.02562 * 5 4 3 7 7 C 1.50695 * 120.39817 * 179.97438 * 6 5 4 8 8 C 1.38116 * 119.19840 * 359.73826 * 6 5 4 9 9 C 1.39624 * 118.33536 * 0.52543 * 8 6 5 10 10 N 1.38542 * 120.53398 * 179.75435 * 9 8 6 11 11 C 1.46499 * 119.99875 * 359.72158 * 10 9 8 12 12 C 1.50701 * 109.46992 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 N 1.31746 * 119.08131 * 90.00178 * 4 3 2 21 21 H 1.09008 * 109.46812 * 300.00231 * 1 2 3 22 22 H 1.09000 * 109.47117 * 59.99478 * 1 2 3 23 23 H 1.09002 * 109.47490 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47021 * 60.00523 * 3 2 1 25 25 H 1.09002 * 109.47319 * 300.00077 * 3 2 1 26 26 H 1.09001 * 109.47322 * 89.99940 * 7 6 5 27 27 H 1.09009 * 109.47150 * 209.99604 * 7 6 5 28 28 H 1.08998 * 109.47460 * 329.99510 * 7 6 5 29 29 H 1.07999 * 120.83523 * 180.25251 * 8 6 5 30 30 H 0.97000 * 119.99704 * 179.71388 * 10 9 8 31 31 H 1.09002 * 109.47391 * 59.99672 * 11 10 9 32 32 H 1.09001 * 109.46813 * 299.99728 * 11 10 9 33 33 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.1517 1.1358 1.1508 6 6 5.4723 1.0317 1.1948 7 6 6.1891 0.9757 2.5192 8 6 6.1831 0.9701 0.0122 9 6 5.4758 1.0318 -1.1901 10 7 6.1434 0.9791 -2.4029 11 6 7.6035 0.8638 -2.4309 12 6 8.0771 0.8258 -3.8611 13 1 7.3619 0.8823 -4.6684 14 6 9.4234 0.7199 -4.1389 15 7 10.2943 0.6516 -3.1559 16 14 10.0104 0.6736 -5.9117 17 1 8.8414 0.7659 -6.8228 18 1 10.9233 1.8180 -6.1609 19 1 10.7332 -0.5996 -6.1606 20 7 4.1505 1.1359 -1.1523 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6887 1.8463 0.8900 25 1 1.6887 1.8464 -0.8900 26 1 6.2811 -0.0623 2.8390 27 1 7.1822 1.4127 2.4136 28 1 5.6227 1.5362 3.2629 29 1 7.2594 0.8809 0.0172 30 1 5.6439 1.0184 -3.2335 31 1 7.9055 -0.0527 -1.9241 32 1 8.0455 1.7217 -1.9242 33 1 11.2415 0.5768 -3.3513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309081981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:41 Heat of formation + Delta-G solvation = -25.816195 kcal Electronic energy + Delta-G solvation = -16091.804615 eV Core-core repulsion = 13344.660929 eV Total energy + Delta-G solvation = -2747.143686 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.96106 -38.83279 -37.57459 -35.29544 -34.69417 -32.52390 -29.77011 -29.00514 -28.60709 -26.77061 -25.01301 -23.03903 -22.64561 -19.69117 -18.27794 -17.70903 -17.52206 -16.74319 -16.48453 -16.35418 -16.07363 -16.00712 -15.14719 -14.79426 -14.45384 -14.07818 -13.77602 -13.51647 -13.26411 -13.03892 -12.87096 -12.85451 -12.36848 -12.27573 -11.91968 -11.68100 -11.45449 -10.81732 -10.69769 -10.56307 -10.22725 -8.99566 -8.34801 -6.48554 -0.00895 0.40530 1.41140 1.42019 1.54747 2.12019 2.38290 2.53690 2.97186 3.01791 3.32044 3.52004 3.83121 4.13732 4.29475 4.33578 4.50048 4.57229 4.59880 4.64428 4.77639 4.83447 4.88381 5.00788 5.06873 5.17577 5.38005 5.56229 5.74613 5.83747 6.14645 6.41058 6.56773 6.82791 7.21585 7.32361 8.76869 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031216 B = 0.005108 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.752675 B = 5480.699330 C = 6261.919732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.142 3.858 4 C 0.343 3.657 5 N -0.566 5.566 6 C 0.195 3.805 7 C -0.097 4.097 8 C -0.306 4.306 9 C 0.422 3.578 10 N -0.691 5.691 11 C 0.271 3.729 12 C -0.561 4.561 13 H 0.070 0.930 14 C 0.016 3.984 15 N -0.921 5.921 16 Si 0.977 3.023 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.276 1.276 20 N -0.593 5.593 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.139 0.861 30 H 0.402 0.598 31 H 0.006 0.994 32 H 0.008 0.992 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.156 1.392 7.967 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C 0.064 3.936 4 C 0.072 3.928 5 N -0.289 5.289 6 C 0.054 3.946 7 C -0.154 4.154 8 C -0.335 4.335 9 C 0.177 3.823 10 N -0.319 5.319 11 C 0.149 3.851 12 C -0.599 4.599 13 H 0.088 0.912 14 C -0.185 4.185 15 N -0.559 5.559 16 Si 0.801 3.199 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.202 1.202 20 N -0.321 5.321 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.157 0.843 30 H 0.238 0.762 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.547 1.260 7.989 15.778 hybrid contribution 1.251 0.035 -1.323 1.821 sum -12.296 1.295 6.666 14.047 Atomic orbital electron populations 1.22999 0.78110 1.04124 1.01564 1.87889 1.22546 1.27062 1.95753 1.20989 0.83363 0.85869 1.03349 1.22930 0.97428 0.89548 0.82885 1.68093 1.09693 1.21655 1.29474 1.21944 0.89128 0.87073 0.96472 1.20822 0.99829 1.04596 0.90114 1.22173 1.02629 1.15987 0.92681 1.18963 0.88290 0.87069 0.87959 1.45126 1.08058 1.74591 1.04125 1.18844 0.73643 0.95096 0.97502 1.21526 0.93299 1.53075 0.92010 0.91161 1.25828 0.96355 0.93727 1.02580 1.70048 1.02857 1.49273 1.33710 0.85217 0.78399 0.77964 0.78325 1.18777 1.20083 1.20161 1.67727 1.07831 1.24624 1.31920 0.92040 0.92646 0.88476 0.88564 0.89757 0.88567 0.89087 0.88793 0.84310 0.76240 0.97626 0.97404 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.81 10.69 -148.98 -1.59 -13.41 16 3 C 0.14 3.90 6.37 71.24 0.45 4.35 16 4 C 0.34 12.44 7.27 138.77 1.01 13.45 16 5 N -0.57 -20.11 10.27 -176.28 -1.81 -21.92 16 6 C 0.20 6.69 6.81 42.42 0.29 6.98 16 7 C -0.10 -2.30 10.21 71.23 0.73 -1.57 16 8 C -0.31 -12.14 9.08 22.58 0.20 -11.93 16 9 C 0.42 18.17 7.71 133.16 1.03 19.19 16 10 N -0.69 -31.24 5.70 -348.31 -1.99 -33.23 16 11 C 0.27 13.89 4.68 85.63 0.40 14.30 16 12 C -0.56 -30.14 9.28 25.60 0.24 -29.90 16 13 H 0.07 3.63 7.60 -2.91 -0.02 3.60 16 14 C 0.02 0.85 5.46 84.66 0.46 1.31 16 15 N -0.92 -51.95 13.29 21.45 0.28 -51.67 16 16 Si 0.98 41.80 29.54 68.60 2.03 43.82 16 17 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 18 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 20 N -0.59 -24.18 10.37 -185.43 -1.92 -26.10 16 21 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 22 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.09 1.94 8.10 -2.38 -0.02 1.92 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.14 5.56 6.87 -2.91 -0.02 5.54 16 30 H 0.40 17.41 8.45 -92.71 -0.78 16.62 16 31 H 0.01 0.32 7.96 -2.39 -0.02 0.30 16 32 H 0.01 0.44 7.98 -2.39 -0.02 0.42 16 33 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -64.71 291.30 1.39 -63.32 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.33 Total: 21.28 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 6.06 Total: 17.91 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -5.43 Total: -132.92 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.59 Total: -13.41 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -64.71 1.39 -63.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309081981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.504 kcal (2) G-P(sol) polarization free energy of solvation -64.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds