Wall clock time and date at job start Sun Mar 29 2020 22:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39868 * 126.04341 * 2 1 4 4 N 1.30838 * 108.20529 * 179.74077 * 3 2 1 5 5 N 1.40080 * 108.20322 * 0.40997 * 4 3 2 6 6 C 1.46499 * 126.03836 * 179.84726 * 5 4 3 7 7 C 1.50699 * 109.47367 * 304.69265 * 6 5 4 8 8 O 1.21279 * 119.99997 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00179 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00376 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46725 * 35.00314 * 10 9 7 12 12 C 1.52997 * 109.47188 * 275.00479 * 10 9 7 13 13 C 1.50697 * 109.47081 * 155.00043 * 10 9 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46980 * 89.99582 * 17 15 13 19 19 H 1.48493 * 109.47135 * 209.99651 * 17 15 13 20 20 H 1.48498 * 109.47274 * 330.00048 * 17 15 13 21 21 C 1.34950 * 107.92643 * 359.59056 * 5 4 3 22 22 H 1.08996 * 109.47143 * 269.99887 * 1 2 3 23 23 H 1.09011 * 109.46934 * 29.99457 * 1 2 3 24 24 H 1.08998 * 109.47621 * 149.99278 * 1 2 3 25 25 H 1.08004 * 125.89686 * 0.02562 * 3 2 1 26 26 H 1.09004 * 109.47647 * 184.68692 * 6 5 4 27 27 H 1.09009 * 109.47050 * 64.69446 * 6 5 4 28 28 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 29 29 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 30 30 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 31 31 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 32 32 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 33 33 H 1.07995 * 126.12860 * 180.22702 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7301 0.0056 5 7 3.5844 -0.6706 -0.0001 6 6 4.7745 -1.5249 0.0001 7 6 5.6579 -1.1561 -1.1637 8 8 5.3259 -0.2675 -1.9194 9 7 6.8170 -1.8138 -1.3650 10 6 7.6755 -1.4557 -2.4967 11 1 7.6188 -0.3810 -2.6699 12 6 7.2060 -2.1996 -3.7485 13 6 9.0996 -1.8403 -2.1883 14 1 9.3409 -2.3053 -1.2439 15 6 10.0944 -1.5984 -3.1118 16 7 9.8005 -1.0325 -4.2620 17 14 11.8596 -2.0757 -2.7299 18 1 12.1086 -3.4640 -3.1946 19 1 12.7853 -1.1469 -3.4266 20 1 12.0880 -1.9958 -1.2647 21 6 2.3031 -1.0942 -0.0002 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8901 -0.5138 24 1 -0.3634 -0.8899 -0.5139 25 1 1.9951 2.1578 0.0004 26 1 4.4728 -2.5686 -0.0891 27 1 5.3229 -1.3838 0.9316 28 1 7.0824 -2.5248 -0.7608 29 1 7.2627 -3.2743 -3.5752 30 1 7.8445 -1.9328 -4.5906 31 1 6.1759 -1.9214 -3.9715 32 1 10.5004 -0.8620 -4.9116 33 1 1.9723 -2.1222 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330629395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:57 Heat of formation + Delta-G solvation = 37.532030 kcal Electronic energy + Delta-G solvation = -16340.877736 eV Core-core repulsion = 13596.481035 eV Total energy + Delta-G solvation = -2744.396701 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.05002 -38.77218 -34.89657 -33.43780 -32.42212 -31.45609 -29.46306 -27.79300 -25.44337 -25.23107 -21.93224 -20.58409 -20.20462 -19.42528 -17.32054 -16.76532 -15.87961 -15.22687 -14.96717 -14.47280 -14.14337 -13.80167 -13.32304 -13.06314 -12.89827 -12.61291 -12.45095 -12.09847 -11.86353 -11.62861 -11.13601 -10.95936 -10.76893 -10.37245 -10.28775 -10.26518 -9.53545 -9.08531 -8.93676 -8.58844 -8.15866 -7.97697 -6.14770 -4.24668 2.06174 2.60813 2.99246 3.22084 3.23829 3.29797 3.31962 3.93966 4.33416 4.71121 4.87435 5.13342 5.17194 5.22891 5.33326 5.34011 5.54780 5.69609 5.92383 6.02117 6.23589 6.77545 6.82789 6.90965 7.09904 7.12186 7.39117 7.51271 7.65111 7.87297 7.92742 8.11149 8.57141 8.73792 9.03436 9.42769 10.91232 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.062844 B = 0.004610 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.437860 B = 6072.452791 C = 6136.666760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.247 4.247 3 C 0.036 3.964 4 N -0.259 5.259 5 N -0.354 5.354 6 C 0.111 3.889 7 C 0.487 3.513 8 O -0.525 6.525 9 N -0.708 5.708 10 C 0.266 3.734 11 H 0.049 0.951 12 C -0.146 4.146 13 C -0.535 4.535 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.048 3.952 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.179 0.821 26 H 0.118 0.882 27 H 0.109 0.891 28 H 0.389 0.611 29 H 0.027 0.973 30 H 0.091 0.909 31 H 0.013 0.987 32 H 0.265 0.735 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.494 -3.294 9.312 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.258 4.258 3 C -0.151 4.151 4 N -0.079 5.079 5 N -0.136 5.136 6 C -0.015 4.015 7 C 0.269 3.731 8 O -0.401 6.401 9 N -0.357 5.357 10 C 0.164 3.836 11 H 0.067 0.933 12 C -0.205 4.205 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.097 4.097 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.196 0.804 26 H 0.136 0.864 27 H 0.127 0.873 28 H 0.221 0.779 29 H 0.046 0.954 30 H 0.109 0.891 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.250 -2.311 8.560 15.122 hybrid contribution 0.335 -0.973 0.369 1.093 sum -11.916 -3.284 8.930 15.248 Atomic orbital electron populations 1.19999 0.89590 1.01922 1.01079 1.20068 0.96825 0.91993 1.16961 1.23790 0.90164 0.99654 1.01487 1.77533 1.20722 0.88387 1.21226 1.47997 1.04485 1.04818 1.56316 1.21622 0.85493 0.93740 1.00615 1.20305 0.82974 0.83627 0.86196 1.90745 1.72464 1.30292 1.46561 1.46481 1.20383 1.37092 1.31740 1.18760 0.87128 0.96720 0.80949 0.93325 1.22078 0.98121 0.98188 1.02120 1.21199 0.91405 1.41932 1.02810 0.92012 1.24897 0.99335 0.94679 0.94805 1.69900 1.33356 1.41661 1.07102 0.86428 0.83764 0.78300 0.78488 1.20534 1.21032 1.19829 1.22257 0.84036 0.99910 1.03497 0.92484 0.92046 0.92434 0.80433 0.86381 0.87320 0.77888 0.95432 0.89082 0.96779 0.92514 0.81306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.37 36.00 0.37 -0.25 16 2 C -0.25 -3.20 6.10 -105.05 -0.64 -3.84 16 3 C 0.04 0.54 11.96 -17.37 -0.21 0.33 16 4 N -0.26 -4.76 11.66 30.63 0.36 -4.41 16 5 N -0.35 -5.65 3.39 -62.54 -0.21 -5.86 16 6 C 0.11 1.55 6.99 -5.19 -0.04 1.52 16 7 C 0.49 9.70 7.82 -10.99 -0.09 9.62 16 8 O -0.52 -13.18 15.38 5.56 0.09 -13.10 16 9 N -0.71 -14.34 5.07 -54.94 -0.28 -14.62 16 10 C 0.27 6.78 2.56 -69.09 -0.18 6.61 16 11 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 12 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 13 C -0.54 -14.12 8.73 -34.44 -0.30 -14.42 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.88 -25.01 11.32 55.43 0.63 -24.38 16 17 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.05 0.63 11.36 -17.22 -0.20 0.43 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.18 2.09 8.06 -52.48 -0.42 1.66 16 26 H 0.12 1.14 8.07 -51.93 -0.42 0.73 16 27 H 0.11 1.29 8.14 -51.92 -0.42 0.86 16 28 H 0.39 6.47 8.54 -40.82 -0.35 6.13 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 289.41 15.07 4.36 4.36 Total: -1.00 -34.37 289.41 -5.50 -39.87 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.40 Total: 4.19 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.02 Total: -1.62 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.49 Total: -49.26 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.37 -5.50 -39.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330629395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.401 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds