Wall clock time and date at job start Sun Mar 29 2020 22:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39868 * 126.04341 * 2 1 4 4 N 1.30838 * 108.20529 * 179.74077 * 3 2 1 5 5 N 1.40080 * 108.20322 * 0.40997 * 4 3 2 6 6 C 1.46499 * 126.03836 * 179.84726 * 5 4 3 7 7 C 1.50699 * 109.47367 * 304.69265 * 6 5 4 8 8 O 1.21279 * 119.99997 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00179 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00376 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46725 * 35.00314 * 10 9 7 12 12 C 1.52997 * 109.47188 * 275.00479 * 10 9 7 13 13 C 1.50697 * 109.47081 * 155.00043 * 10 9 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46980 * 89.99582 * 17 15 13 19 19 H 1.48493 * 109.47135 * 209.99651 * 17 15 13 20 20 H 1.48498 * 109.47274 * 330.00048 * 17 15 13 21 21 C 1.34950 * 107.92643 * 359.59056 * 5 4 3 22 22 H 1.08996 * 109.47143 * 269.99887 * 1 2 3 23 23 H 1.09011 * 109.46934 * 29.99457 * 1 2 3 24 24 H 1.08998 * 109.47621 * 149.99278 * 1 2 3 25 25 H 1.08004 * 125.89686 * 0.02562 * 3 2 1 26 26 H 1.09004 * 109.47647 * 184.68692 * 6 5 4 27 27 H 1.09009 * 109.47050 * 64.69446 * 6 5 4 28 28 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 29 29 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 30 30 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 31 31 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 32 32 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 33 33 H 1.07995 * 126.12860 * 180.22702 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7301 0.0056 5 7 3.5844 -0.6706 -0.0001 6 6 4.7745 -1.5249 0.0001 7 6 5.6579 -1.1561 -1.1637 8 8 5.3259 -0.2675 -1.9194 9 7 6.8170 -1.8138 -1.3650 10 6 7.6755 -1.4557 -2.4967 11 1 7.6188 -0.3810 -2.6699 12 6 7.2060 -2.1996 -3.7485 13 6 9.0996 -1.8403 -2.1883 14 1 9.3409 -2.3053 -1.2439 15 6 10.0944 -1.5984 -3.1118 16 7 9.8005 -1.0325 -4.2620 17 14 11.8596 -2.0757 -2.7299 18 1 12.1086 -3.4640 -3.1946 19 1 12.7853 -1.1469 -3.4266 20 1 12.0880 -1.9958 -1.2647 21 6 2.3031 -1.0942 -0.0002 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8901 -0.5138 24 1 -0.3634 -0.8899 -0.5139 25 1 1.9951 2.1578 0.0004 26 1 4.4728 -2.5686 -0.0891 27 1 5.3229 -1.3838 0.9316 28 1 7.0824 -2.5248 -0.7608 29 1 7.2627 -3.2743 -3.5752 30 1 7.8445 -1.9328 -4.5906 31 1 6.1759 -1.9214 -3.9715 32 1 10.5004 -0.8620 -4.9116 33 1 1.9723 -2.1222 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330629395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:57 Heat of formation + Delta-G solvation = 12.421777 kcal Electronic energy + Delta-G solvation = -16341.966599 eV Core-core repulsion = 13596.481035 eV Total energy + Delta-G solvation = -2745.485563 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.13131 -40.40541 -36.78127 -34.63684 -34.28424 -32.46908 -31.20922 -29.03560 -27.37139 -26.39493 -23.52529 -22.02672 -21.33790 -20.98263 -19.00313 -17.94622 -17.57661 -17.01542 -16.35789 -16.04159 -15.44042 -15.17131 -14.62593 -14.39739 -14.15454 -13.91339 -13.80580 -13.46254 -13.12563 -13.00770 -12.81370 -12.73850 -12.63078 -12.31058 -12.15890 -11.36959 -11.13699 -11.00204 -10.62794 -10.26510 -9.80210 -9.17374 -8.19423 -6.37747 1.00502 1.44046 1.45431 1.55617 1.58777 1.71537 1.96021 2.33796 2.56451 3.11206 3.71247 3.88187 4.05086 4.17170 4.23932 4.53500 4.65213 4.71981 4.87278 4.97136 5.05677 5.06822 5.28863 5.36410 5.39566 5.57213 5.64340 5.78888 5.88377 6.06609 6.18983 6.70382 6.84394 6.90607 7.30208 7.51619 8.87013 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.062844 B = 0.004610 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.437860 B = 6072.452791 C = 6136.666760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.256 4.256 3 C 0.026 3.974 4 N -0.327 5.327 5 N -0.371 5.371 6 C 0.121 3.879 7 C 0.481 3.519 8 O -0.585 6.585 9 N -0.700 5.700 10 C 0.272 3.728 11 H -0.009 1.009 12 C -0.131 4.131 13 C -0.547 4.547 14 H 0.078 0.922 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.975 3.025 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.263 1.263 21 C 0.050 3.950 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.195 0.805 26 H 0.172 0.828 27 H 0.134 0.866 28 H 0.410 0.590 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.007 0.993 32 H 0.265 0.735 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.219 -5.530 11.136 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.267 4.267 3 C -0.160 4.160 4 N -0.148 5.148 5 N -0.153 5.153 6 C -0.003 4.003 7 C 0.267 3.733 8 O -0.464 6.464 9 N -0.351 5.351 10 C 0.168 3.832 11 H 0.008 0.992 12 C -0.190 4.190 13 C -0.585 4.585 14 H 0.096 0.904 15 C -0.188 4.188 16 N -0.558 5.558 17 Si 0.800 3.200 18 H -0.194 1.194 19 H -0.215 1.215 20 H -0.187 1.187 21 C -0.094 4.094 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.212 0.788 26 H 0.189 0.811 27 H 0.152 0.848 28 H 0.246 0.754 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -12.997 -4.580 10.435 17.285 hybrid contribution 0.475 -0.232 -0.204 0.567 sum -12.522 -4.813 10.231 16.871 Atomic orbital electron populations 1.20058 0.86964 1.02835 1.02296 1.20575 0.98653 0.91243 1.16229 1.24294 0.89945 1.01351 1.00427 1.77442 1.22776 0.90503 1.24034 1.48171 1.05815 1.04209 1.57128 1.21769 0.84517 0.95949 0.98089 1.21379 0.82817 0.82136 0.87014 1.90721 1.73757 1.32777 1.49168 1.46164 1.20236 1.37830 1.30860 1.18314 0.88408 0.93415 0.83068 0.99157 1.21877 0.96974 0.99098 1.01073 1.21558 0.91788 1.41717 1.03401 0.90418 1.25853 1.03900 0.94494 0.94540 1.70066 1.34698 1.42830 1.08226 0.85298 0.78016 0.78083 0.78652 1.19404 1.21480 1.18670 1.23038 0.82804 1.01931 1.01631 0.91025 0.91676 0.91013 0.78797 0.81080 0.84840 0.75409 0.93513 0.91712 0.97346 0.92575 0.77005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.37 71.24 0.74 -0.25 16 2 C -0.26 -6.12 6.10 -20.14 -0.12 -6.24 16 3 C 0.03 0.78 11.96 85.24 1.02 1.80 16 4 N -0.33 -12.14 11.66 -57.02 -0.66 -12.81 16 5 N -0.37 -11.21 3.39 -351.79 -1.19 -12.40 16 6 C 0.12 3.07 6.99 85.63 0.60 3.67 16 7 C 0.48 19.02 7.82 87.66 0.69 19.71 16 8 O -0.58 -30.41 15.38 -3.03 -0.05 -30.46 16 9 N -0.70 -27.96 5.07 -446.11 -2.26 -30.22 16 10 C 0.27 14.17 2.56 44.24 0.11 14.29 16 11 H -0.01 -0.60 7.58 -2.39 -0.02 -0.62 16 12 C -0.13 -6.69 9.26 71.98 0.67 -6.02 16 13 C -0.55 -28.75 8.73 25.60 0.22 -28.53 16 14 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 15 C 0.01 0.65 5.30 84.66 0.45 1.10 16 16 N -0.92 -53.43 11.32 21.45 0.24 -53.19 16 17 Si 0.98 41.85 29.54 68.60 2.03 43.88 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 21 C 0.05 1.17 11.36 83.54 0.95 2.11 16 22 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.20 4.60 8.06 -2.91 -0.02 4.57 16 26 H 0.17 2.46 8.07 -2.38 -0.02 2.44 16 27 H 0.13 2.74 8.14 -2.38 -0.02 2.72 16 28 H 0.41 12.75 8.54 -92.70 -0.79 11.96 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 31 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.21 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -79.26 289.41 3.74 -75.51 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.32 Total: 18.06 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 5.32 Total: 1.63 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -3.88 Total: -108.62 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.05 Total: -30.46 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -79.26 3.74 -75.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330629395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.933 kcal (2) G-P(sol) polarization free energy of solvation -79.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds