Wall clock time and date at job start Sun Mar 29 2020 21:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30834 * 125.89986 * 2 1 4 4 N 1.40083 * 108.20332 * 180.02562 * 3 2 1 5 5 C 1.46503 * 126.03797 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92826 * 0.26582 * 4 3 2 7 7 C 1.35325 * 107.74150 * 359.57283 * 6 4 3 8 8 C 1.50697 * 126.03966 * 180.15806 * 7 6 4 9 9 H 1.08991 * 109.47269 * 145.31138 * 8 7 6 10 10 C 1.53004 * 109.47306 * 265.31450 * 8 7 6 11 11 N 1.46499 * 109.46885 * 25.31094 * 8 7 6 12 12 C 1.34779 * 119.99780 * 154.99992 * 11 8 7 13 13 O 1.21682 * 120.00445 * 359.97438 * 12 11 8 14 14 C 1.46374 * 119.99981 * 180.02562 * 12 11 8 15 15 H 1.08005 * 120.00000 * 353.93749 * 14 12 11 16 16 C 1.40046 * 120.00129 * 173.93784 * 14 12 11 17 17 N 1.30671 * 120.00014 * 6.15077 * 16 14 12 18 18 Si 1.86809 * 120.00027 * 186.14862 * 16 14 12 19 19 H 1.48498 * 109.46783 * 94.98612 * 18 16 14 20 20 H 1.48497 * 109.46797 * 214.98454 * 18 16 14 21 21 H 1.48493 * 109.47108 * 334.98418 * 18 16 14 22 22 H 1.09004 * 109.47018 * 89.97230 * 1 2 3 23 23 H 1.09004 * 109.47643 * 209.97645 * 1 2 3 24 24 H 1.09004 * 109.46983 * 329.97647 * 1 2 3 25 25 H 1.08996 * 109.47115 * 90.02945 * 5 4 3 26 26 H 1.08997 * 109.46789 * 330.03038 * 5 4 3 27 27 H 1.09000 * 109.47171 * 210.02962 * 5 4 3 28 28 H 1.07997 * 126.12646 * 179.73375 * 6 4 3 29 29 H 1.08997 * 109.46799 * 299.99749 * 10 8 7 30 30 H 1.09001 * 109.47069 * 59.99698 * 10 8 7 31 31 H 1.08996 * 109.47012 * 179.97438 * 10 8 7 32 32 H 0.96999 * 120.00455 * 335.00066 * 11 8 7 33 33 H 0.97001 * 120.00028 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0006 5 6 4.7900 1.5006 -0.0003 6 6 3.6142 -0.7155 -0.0069 7 6 2.3270 -1.1331 -0.0006 8 6 1.8597 -2.5658 -0.0009 9 1 0.9470 -2.6504 0.5888 10 6 1.5815 -3.0113 -1.4380 11 7 2.8986 -3.4184 0.5821 12 6 2.5653 -4.5951 1.1484 13 8 1.4015 -4.9492 1.1759 14 6 3.6033 -5.4468 1.7315 15 1 4.6444 -5.1809 1.6222 16 6 3.2464 -6.6063 2.4310 17 7 1.9986 -6.9931 2.4614 18 14 4.5543 -7.6002 3.3206 19 1 4.6087 -7.1838 4.7450 20 1 4.2187 -9.0445 3.2396 21 1 5.8748 -7.3624 2.6845 22 1 -0.3633 0.0005 -1.0277 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5142 25 1 5.0834 1.7144 1.0274 26 1 4.5561 2.4336 -0.5129 27 1 5.6091 0.9985 -0.5151 28 1 4.4891 -1.3487 -0.0130 29 1 0.8086 -2.3769 -1.8718 30 1 2.4943 -2.9266 -2.0277 31 1 1.2440 -4.0476 -1.4382 32 1 3.8264 -3.1361 0.5606 33 1 1.7514 -7.7960 2.9462 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331076241.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:13 Heat of formation + Delta-G solvation = 31.008798 kcal Electronic energy + Delta-G solvation = -16635.423902 eV Core-core repulsion = 13890.744333 eV Total energy + Delta-G solvation = -2744.679570 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.09303 -37.41534 -34.60316 -33.37071 -32.32431 -30.00581 -29.71034 -28.36590 -26.04910 -25.30526 -22.47995 -20.79883 -19.36085 -18.83225 -17.47733 -16.15888 -15.42547 -15.25150 -14.72474 -14.20864 -13.82953 -13.53392 -13.12447 -12.99950 -12.90737 -12.40111 -12.18025 -12.02175 -11.88745 -11.52254 -11.43528 -11.05994 -10.94368 -10.56149 -10.43216 -10.20919 -10.12549 -9.00852 -8.82488 -8.09269 -7.54822 -7.43724 -6.15765 -4.59799 2.06112 2.65152 2.98956 3.15387 3.22538 3.25674 4.13112 4.55251 4.63505 4.91221 5.02686 5.08409 5.12828 5.31522 5.44014 5.62707 5.77440 5.82647 5.99646 6.05954 6.14346 6.17580 6.30248 6.44995 6.79305 6.83369 6.97948 7.20576 7.46657 7.89491 7.98279 8.18673 8.38496 9.06217 9.59514 10.64125 10.83593 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032204 B = 0.006102 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.240644 B = 4587.670439 C = 5150.492660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.082 3.918 3 N -0.305 5.305 4 N -0.383 5.383 5 C 0.106 3.894 6 C 0.057 3.943 7 C -0.222 4.222 8 C 0.227 3.773 9 H 0.082 0.918 10 C -0.149 4.149 11 N -0.760 5.760 12 C 0.557 3.443 13 O -0.580 6.580 14 C -0.547 4.547 15 H 0.066 0.934 16 C 0.089 3.911 17 N -0.768 5.768 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.266 1.266 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.171 0.829 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.375 0.625 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 12.792 -4.989 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 N -0.128 5.128 4 N -0.165 5.165 5 C -0.035 4.035 6 C -0.088 4.088 7 C -0.233 4.233 8 C 0.120 3.880 9 H 0.100 0.900 10 C -0.208 4.208 11 N -0.415 5.415 12 C 0.361 3.639 13 O -0.462 6.462 14 C -0.584 4.584 15 H 0.084 0.916 16 C -0.131 4.131 17 N -0.396 5.396 18 Si 0.730 3.270 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.190 1.190 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.189 0.811 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.206 0.794 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.605 13.750 -4.900 15.035 hybrid contribution 1.391 -1.173 0.457 1.876 sum 4.996 12.578 -4.443 14.244 Atomic orbital electron populations 1.20204 0.86788 1.03420 1.02837 1.22176 0.96839 0.90116 0.99359 1.77202 0.86464 1.22768 1.26400 1.48245 1.05309 1.04691 1.58293 1.21764 0.83873 0.94817 1.03081 1.22195 0.99462 0.84472 1.02669 1.20356 0.91914 0.96677 1.14381 1.18690 0.92994 0.82747 0.93580 0.90047 1.22125 1.00316 1.01756 0.96621 1.46200 1.07815 1.22367 1.65104 1.18179 0.89490 0.79051 0.77162 1.90590 1.20774 1.73164 1.61700 1.20879 0.92987 1.07829 1.36741 0.91579 1.25681 0.95473 0.96849 0.95077 1.70025 1.17226 1.20158 1.32228 0.86402 0.81572 0.78979 0.80035 1.19879 1.20481 1.18973 0.90611 0.89941 0.91228 0.91060 0.89713 0.89678 0.81143 0.93327 0.93660 0.91810 0.79353 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.26 36.01 0.37 -0.61 16 2 C 0.08 1.33 7.22 -82.41 -0.59 0.73 16 3 N -0.30 -4.97 12.58 33.67 0.42 -4.55 16 4 N -0.38 -5.41 4.01 -68.16 -0.27 -5.68 16 5 C 0.11 0.95 11.47 59.85 0.69 1.63 16 6 C 0.06 0.86 10.66 -17.22 -0.18 0.67 16 7 C -0.22 -3.79 5.22 -105.05 -0.55 -4.34 16 8 C 0.23 4.50 2.81 -69.08 -0.19 4.30 16 9 H 0.08 1.81 6.85 -51.93 -0.36 1.46 16 10 C -0.15 -2.72 9.47 37.16 0.35 -2.37 16 11 N -0.76 -16.98 5.04 -56.35 -0.28 -17.26 16 12 C 0.56 15.76 7.71 -12.99 -0.10 15.66 16 13 O -0.58 -18.58 14.71 5.20 0.08 -18.50 16 14 C -0.55 -15.40 9.53 -35.63 -0.34 -15.74 16 15 H 0.07 1.70 7.86 -52.48 -0.41 1.29 16 16 C 0.09 2.48 5.49 -17.37 -0.10 2.38 16 17 N -0.77 -23.02 11.85 55.55 0.66 -22.36 16 18 Si 0.91 20.12 29.56 -169.99 -5.03 15.10 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.08 1.11 7.37 -51.93 -0.38 0.73 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.17 2.14 7.06 -52.49 -0.37 1.77 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.38 7.33 6.98 -40.82 -0.28 7.04 16 33 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 LS Contribution 288.45 15.07 4.35 4.35 Total: -1.00 -35.90 288.45 -5.05 -40.95 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.32 Total: 5.65 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.65 Total: 2.32 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.52 Total: -49.86 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.08 Total: -18.50 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.90 -5.05 -40.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331076241.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.955 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds