Wall clock time and date at job start Sun Mar 29 2020 21:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30834 * 125.89986 * 2 1 4 4 N 1.40083 * 108.20332 * 180.02562 * 3 2 1 5 5 C 1.46503 * 126.03797 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92826 * 0.26582 * 4 3 2 7 7 C 1.35325 * 107.74150 * 359.57283 * 6 4 3 8 8 C 1.50697 * 126.03966 * 180.15806 * 7 6 4 9 9 H 1.08991 * 109.47269 * 145.31138 * 8 7 6 10 10 C 1.53004 * 109.47306 * 265.31450 * 8 7 6 11 11 N 1.46499 * 109.46885 * 25.31094 * 8 7 6 12 12 C 1.34779 * 119.99780 * 154.99992 * 11 8 7 13 13 O 1.21682 * 120.00445 * 359.97438 * 12 11 8 14 14 C 1.46374 * 119.99981 * 180.02562 * 12 11 8 15 15 H 1.08005 * 120.00000 * 353.93749 * 14 12 11 16 16 C 1.40046 * 120.00129 * 173.93784 * 14 12 11 17 17 N 1.30671 * 120.00014 * 6.15077 * 16 14 12 18 18 Si 1.86809 * 120.00027 * 186.14862 * 16 14 12 19 19 H 1.48498 * 109.46783 * 94.98612 * 18 16 14 20 20 H 1.48497 * 109.46797 * 214.98454 * 18 16 14 21 21 H 1.48493 * 109.47108 * 334.98418 * 18 16 14 22 22 H 1.09004 * 109.47018 * 89.97230 * 1 2 3 23 23 H 1.09004 * 109.47643 * 209.97645 * 1 2 3 24 24 H 1.09004 * 109.46983 * 329.97647 * 1 2 3 25 25 H 1.08996 * 109.47115 * 90.02945 * 5 4 3 26 26 H 1.08997 * 109.46789 * 330.03038 * 5 4 3 27 27 H 1.09000 * 109.47171 * 210.02962 * 5 4 3 28 28 H 1.07997 * 126.12646 * 179.73375 * 6 4 3 29 29 H 1.08997 * 109.46799 * 299.99749 * 10 8 7 30 30 H 1.09001 * 109.47069 * 59.99698 * 10 8 7 31 31 H 1.08996 * 109.47012 * 179.97438 * 10 8 7 32 32 H 0.96999 * 120.00455 * 335.00066 * 11 8 7 33 33 H 0.97001 * 120.00028 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0006 5 6 4.7900 1.5006 -0.0003 6 6 3.6142 -0.7155 -0.0069 7 6 2.3270 -1.1331 -0.0006 8 6 1.8597 -2.5658 -0.0009 9 1 0.9470 -2.6504 0.5888 10 6 1.5815 -3.0113 -1.4380 11 7 2.8986 -3.4184 0.5821 12 6 2.5653 -4.5951 1.1484 13 8 1.4015 -4.9492 1.1759 14 6 3.6033 -5.4468 1.7315 15 1 4.6444 -5.1809 1.6222 16 6 3.2464 -6.6063 2.4310 17 7 1.9986 -6.9931 2.4614 18 14 4.5543 -7.6002 3.3206 19 1 4.6087 -7.1838 4.7450 20 1 4.2187 -9.0445 3.2396 21 1 5.8748 -7.3624 2.6845 22 1 -0.3633 0.0005 -1.0277 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5142 25 1 5.0834 1.7144 1.0274 26 1 4.5561 2.4336 -0.5129 27 1 5.6091 0.9985 -0.5151 28 1 4.4891 -1.3487 -0.0130 29 1 0.8086 -2.3769 -1.8718 30 1 2.4943 -2.9266 -2.0277 31 1 1.2440 -4.0476 -1.4382 32 1 3.8264 -3.1361 0.5606 33 1 1.7514 -7.7960 2.9462 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331076241.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:13 Heat of formation + Delta-G solvation = 4.496460 kcal Electronic energy + Delta-G solvation = -16636.573564 eV Core-core repulsion = 13890.744333 eV Total energy + Delta-G solvation = -2745.829231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.28574 -39.40912 -36.25913 -34.71795 -34.38963 -31.70191 -30.77028 -29.65848 -28.12549 -26.36558 -23.94845 -22.37286 -20.70607 -20.50459 -19.23073 -17.68387 -17.15647 -16.48474 -16.34703 -15.85247 -15.18242 -14.93745 -14.61087 -14.32380 -14.20089 -13.93681 -13.51794 -13.28886 -13.15188 -12.98056 -12.86018 -12.70602 -12.67272 -12.55416 -12.01965 -11.97679 -11.51968 -10.89869 -10.15060 -9.78835 -9.49495 -9.20809 -8.25028 -6.79692 0.90086 1.42292 1.43540 1.58985 1.67266 1.72513 2.27562 2.53321 3.17329 3.57211 3.69593 3.90857 4.14314 4.25868 4.44845 4.46378 4.54216 4.63223 4.70388 4.79196 4.83793 4.90449 5.03278 5.13549 5.24274 5.35765 5.37169 5.70207 5.94223 6.13394 6.29986 6.37921 6.73800 6.91890 7.63226 8.56050 8.73422 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032204 B = 0.006102 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.240644 B = 4587.670439 C = 5150.492660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.071 3.929 3 N -0.325 5.325 4 N -0.377 5.377 5 C 0.094 3.906 6 C 0.067 3.933 7 C -0.251 4.251 8 C 0.233 3.767 9 H 0.047 0.953 10 C -0.139 4.139 11 N -0.746 5.746 12 C 0.542 3.458 13 O -0.630 6.630 14 C -0.574 4.574 15 H 0.088 0.912 16 C 0.029 3.971 17 N -0.822 5.822 18 Si 0.996 3.004 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.247 1.247 22 H 0.093 0.907 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.196 0.804 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.391 0.609 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.067 13.752 -5.066 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 N -0.149 5.149 4 N -0.159 5.159 5 C -0.045 4.045 6 C -0.080 4.080 7 C -0.263 4.263 8 C 0.127 3.873 9 H 0.065 0.935 10 C -0.198 4.198 11 N -0.400 5.400 12 C 0.345 3.655 13 O -0.517 6.517 14 C -0.611 4.611 15 H 0.106 0.894 16 C -0.186 4.186 17 N -0.452 5.452 18 Si 0.815 3.185 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.170 1.170 22 H 0.111 0.889 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.133 0.867 28 H 0.213 0.787 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.225 0.775 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.285 14.791 -5.007 16.832 hybrid contribution 0.603 -1.352 0.442 1.545 sum 6.887 13.438 -4.565 15.775 Atomic orbital electron populations 1.20267 0.85542 1.03453 1.03980 1.22500 0.97983 0.89782 0.99174 1.77164 0.87610 1.22938 1.27164 1.48666 1.05797 1.04946 1.56465 1.22217 0.82781 0.94944 1.04586 1.22509 0.99376 0.85285 1.00794 1.20108 0.93384 0.95074 1.17730 1.18579 0.91002 0.84317 0.93441 0.93529 1.22006 1.01729 0.99912 0.96131 1.45858 1.09262 1.21065 1.63853 1.18558 0.88993 0.80567 0.77334 1.90547 1.22644 1.74779 1.63705 1.21428 0.93967 1.08534 1.37169 0.89423 1.26941 0.98136 0.97973 0.95501 1.70197 1.20307 1.21168 1.33526 0.85038 0.78286 0.76729 0.78413 1.19038 1.19901 1.16996 0.88890 0.91061 0.89981 0.89779 0.88686 0.86688 0.78684 0.90905 0.92089 0.95324 0.77517 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.94 10.26 71.24 0.73 -1.20 16 2 C 0.07 2.27 7.22 43.10 0.31 2.58 16 3 N -0.32 -10.05 12.58 -47.39 -0.60 -10.65 16 4 N -0.38 -9.67 4.01 -369.56 -1.48 -11.15 16 5 C 0.09 1.35 11.47 127.77 1.47 2.82 16 6 C 0.07 1.87 10.66 83.54 0.89 2.76 16 7 C -0.25 -8.40 5.22 -20.14 -0.11 -8.51 16 8 C 0.23 9.40 2.81 44.25 0.12 9.52 16 9 H 0.05 2.19 6.85 -2.39 -0.02 2.18 16 10 C -0.14 -5.11 9.47 71.98 0.68 -4.43 16 11 N -0.75 -33.58 5.04 -450.41 -2.27 -35.85 16 12 C 0.54 31.43 7.71 86.36 0.67 32.09 16 13 O -0.63 -42.30 14.71 -4.29 -0.06 -42.37 16 14 C -0.57 -32.40 9.53 24.83 0.24 -32.16 16 15 H 0.09 4.39 7.86 -2.91 -0.02 4.37 16 16 C 0.03 1.64 5.49 85.30 0.47 2.11 16 17 N -0.82 -50.62 11.85 21.83 0.26 -50.36 16 18 Si 1.00 40.85 29.56 68.60 2.03 42.88 16 19 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 21 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 22 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.07 2.00 7.37 -2.39 -0.02 1.98 16 24 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.20 4.25 7.06 -2.91 -0.02 4.23 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.39 14.84 6.98 -92.71 -0.65 14.20 16 33 H 0.27 15.23 8.29 -92.71 -0.77 14.47 16 Total: -1.00 -80.31 288.45 3.82 -76.49 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.47 Total: 25.43 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.47 Total: 5.57 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -4.09 Total: -108.00 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -0.06 Total: -42.37 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -80.31 3.82 -76.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331076241.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.986 kcal (2) G-P(sol) polarization free energy of solvation -80.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds