Wall clock time and date at job start Sun Mar 29 2020 21:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47295 * 2 1 4 4 C 1.37099 * 119.99986 * 264.74980 * 3 2 1 5 5 H 1.07999 * 120.00069 * 146.16549 * 4 3 2 6 6 C 1.38953 * 119.99893 * 326.16472 * 4 3 2 7 7 N 1.31411 * 120.00054 * 337.68402 * 6 4 3 8 8 Si 1.86799 * 120.00085 * 157.69117 * 6 4 3 9 9 H 1.48498 * 109.47334 * 89.99525 * 8 6 4 10 10 H 1.48501 * 109.47032 * 210.00018 * 8 6 4 11 11 H 1.48503 * 109.47146 * 329.99554 * 8 6 4 12 12 C 1.34775 * 120.00168 * 84.74662 * 3 2 1 13 13 O 1.21298 * 119.99954 * 179.97438 * 12 3 2 14 14 C 1.50703 * 119.99847 * 0.02562 * 12 3 2 15 15 C 1.53002 * 109.46963 * 179.97438 * 14 12 3 16 16 C 1.50696 * 109.46886 * 179.97438 * 15 14 12 17 17 C 1.41386 * 126.57660 * 90.00521 * 16 15 14 18 18 C 1.34513 * 106.84032 * 180.25759 * 17 16 15 19 19 O 1.34306 * 108.42087 * 359.63569 * 18 17 16 20 20 C 1.34299 * 109.47596 * 0.37286 * 19 18 17 21 21 H 1.09001 * 109.47184 * 59.99715 * 1 2 3 22 22 H 1.08997 * 109.47240 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46660 * 300.00075 * 1 2 3 24 24 H 1.08998 * 109.46940 * 239.99508 * 2 1 3 25 25 H 1.09001 * 109.47184 * 120.00285 * 2 1 3 26 26 H 0.96997 * 120.00548 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.46849 * 60.00205 * 14 12 3 28 28 H 1.08998 * 109.47227 * 299.99873 * 14 12 3 29 29 H 1.09007 * 109.46867 * 60.00082 * 15 14 12 30 30 H 1.08998 * 109.47331 * 300.00159 * 15 14 12 31 31 H 1.07998 * 126.58200 * 359.97438 * 17 16 15 32 32 H 1.08001 * 125.79320 * 179.76888 * 18 17 16 33 33 H 1.07999 * 125.79372 * 179.79379 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3493 1.9912 -1.1823 5 1 2.1815 3.0506 -1.3089 6 6 2.9006 1.2465 -2.2179 7 7 3.5051 0.1087 -1.9594 8 14 2.7827 1.8630 -3.9773 9 1 3.9650 2.7066 -4.2865 10 1 2.7443 0.7048 -4.9060 11 1 1.5449 2.6675 -4.1380 12 6 2.1423 2.0521 1.1623 13 8 2.5471 3.1956 1.1623 14 6 1.7789 1.3814 2.4620 15 6 2.0105 2.3541 3.6200 16 6 1.6466 1.6836 4.9196 17 6 2.5091 0.9315 5.7500 18 6 1.7755 0.5142 6.7974 19 8 0.5236 0.9778 6.6504 20 6 0.4389 1.6851 5.5119 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.8897 -0.4114 -2.6823 27 1 2.4010 0.4972 2.6007 28 1 0.7296 1.0874 2.4382 29 1 1.3887 3.2386 3.4814 30 1 3.0599 2.6477 3.6436 31 1 3.5549 0.7270 5.5745 32 1 2.1331 -0.0893 7.6186 33 1 -0.4483 2.1727 5.1357 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439816756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:12 Heat of formation + Delta-G solvation = -44.927307 kcal Electronic energy + Delta-G solvation = -16616.244562 eV Core-core repulsion = 13835.979405 eV Total energy + Delta-G solvation = -2780.265157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.38603 -40.46527 -37.02825 -35.67289 -34.01146 -32.22553 -31.15439 -30.04259 -27.34479 -25.18245 -23.80476 -22.40037 -21.19273 -20.39963 -18.77806 -18.35308 -17.49782 -16.95131 -16.75542 -16.19406 -15.97026 -15.45918 -14.79386 -14.55726 -14.42511 -13.69254 -13.63692 -13.54569 -13.25650 -13.03418 -12.87938 -12.82117 -12.60609 -12.23896 -12.08124 -11.94212 -11.66229 -10.89612 -10.61502 -10.27636 -9.45897 -9.37709 -8.33968 -6.03110 0.93048 1.37069 1.41455 1.54354 1.70818 2.06147 2.30806 2.36036 3.02354 3.13277 3.87836 3.96529 4.13461 4.27829 4.31590 4.35725 4.46548 4.63898 4.69946 4.83383 4.88868 4.94359 5.06528 5.19095 5.28760 5.32566 5.39918 5.46770 5.59028 5.62652 6.21288 6.26220 6.55025 7.19433 7.50422 8.09858 8.68324 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047240 B = 0.005368 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.579580 B = 5215.146561 C = 5371.670203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 N -0.455 5.455 4 C -0.344 4.344 5 H 0.063 0.937 6 C 0.002 3.998 7 N -0.889 5.889 8 Si 0.981 3.019 9 H -0.279 1.279 10 H -0.266 1.266 11 H -0.268 1.268 12 C 0.440 3.560 13 O -0.633 6.633 14 C -0.108 4.108 15 C -0.023 4.023 16 C -0.192 4.192 17 C -0.233 4.233 18 C -0.034 4.034 19 O -0.186 6.186 20 C -0.042 4.042 21 H 0.040 0.960 22 H 0.084 0.916 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.274 0.726 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.150 0.850 32 H 0.239 0.761 33 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 -4.591 12.149 14.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.173 5.173 4 C -0.472 4.472 5 H 0.081 0.919 6 C -0.200 4.200 7 N -0.527 5.527 8 Si 0.804 3.196 9 H -0.205 1.205 10 H -0.190 1.190 11 H -0.192 1.192 12 C 0.230 3.770 13 O -0.521 6.521 14 C -0.148 4.148 15 C -0.061 4.061 16 C -0.194 4.194 17 C -0.252 4.252 18 C -0.101 4.101 19 O -0.081 6.081 20 C -0.109 4.109 21 H 0.059 0.941 22 H 0.103 0.897 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.168 0.832 32 H 0.256 0.744 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.376 -4.275 12.218 14.429 hybrid contribution 0.614 0.402 -1.228 1.431 sum -5.762 -3.872 10.990 12.999 Atomic orbital electron populations 1.22095 0.95242 1.02459 1.01324 1.21689 0.94173 0.83495 1.03653 1.43848 1.55670 1.13076 1.04720 1.19408 1.41861 0.94847 0.91104 0.91922 1.26065 0.93517 0.96566 1.03827 1.69988 1.32502 1.15997 1.34241 0.85148 0.78764 0.78239 0.77452 1.20463 1.19031 1.19209 1.21350 0.81450 0.87566 0.86585 1.90462 1.52663 1.21078 1.87911 1.21488 1.03519 0.99133 0.90687 1.19478 1.01425 0.96487 0.88713 1.20545 0.95111 1.04758 0.98939 1.22018 1.01913 1.04247 0.97015 1.24660 0.81075 1.02397 1.01990 1.84067 1.31835 1.54370 1.37866 1.24271 1.00310 1.00018 0.86323 0.94073 0.89746 0.92556 0.89305 0.91788 0.91643 0.89589 0.88204 0.91477 0.92726 0.83195 0.74445 0.75935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 10.15 71.98 0.73 -4.58 16 2 C 0.09 4.05 5.43 86.38 0.47 4.52 16 3 N -0.45 -23.78 2.56 -635.54 -1.63 -25.40 16 4 C -0.34 -19.94 8.98 84.04 0.75 -19.18 16 5 H 0.06 3.89 7.70 -2.91 -0.02 3.87 16 6 C 0.00 0.13 4.92 84.93 0.42 0.55 16 7 N -0.89 -48.40 11.33 21.66 0.25 -48.15 16 8 Si 0.98 42.67 29.61 68.60 2.03 44.70 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 12 C 0.44 22.27 7.59 87.66 0.67 22.93 16 13 O -0.63 -37.23 15.81 -3.08 -0.05 -37.28 16 14 C -0.11 -4.03 4.29 29.85 0.13 -3.90 16 15 C -0.02 -0.79 5.02 29.85 0.15 -0.64 16 16 C -0.19 -5.39 5.42 -19.94 -0.11 -5.49 16 17 C -0.23 -5.76 10.87 22.19 0.24 -5.52 16 18 C -0.03 -0.67 12.09 66.97 0.81 0.14 16 19 O -0.19 -4.18 10.65 -2.47 -0.03 -4.20 16 20 C -0.04 -0.99 12.01 66.97 0.80 -0.18 16 21 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.06 1.78 6.60 -2.39 -0.02 1.77 16 24 H 0.09 4.31 5.34 -2.39 -0.01 4.30 16 25 H 0.06 2.51 6.66 -2.39 -0.02 2.50 16 26 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 27 H 0.09 3.08 7.41 -2.39 -0.02 3.06 16 28 H 0.10 3.22 6.54 -2.39 -0.02 3.20 16 29 H 0.07 2.36 8.10 -2.38 -0.02 2.34 16 30 H 0.05 2.08 8.10 -2.39 -0.02 2.06 16 31 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.24 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.22 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -71.04 283.25 6.74 -64.30 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.10 Total: 17.41 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 5.06 Total: -11.37 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -1.38 Total: -73.55 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -0.08 Total: -41.48 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -71.04 6.74 -64.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439816756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.368 kcal (2) G-P(sol) polarization free energy of solvation -71.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds