Wall clock time and date at job start Sun Mar 29 2020 21:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99980 * 2 1 4 4 H 1.48500 * 109.47267 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47326 * 299.99981 * 3 2 1 6 6 H 1.48503 * 109.47330 * 59.99616 * 3 2 1 7 7 C 1.37876 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 0.02562 * 7 2 1 10 10 N 1.46890 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00688 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47859 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 C 1.38224 * 120.01147 * 99.99850 * 14 13 12 16 16 C 1.38218 * 120.02596 * 179.97438 * 15 14 13 17 17 C 1.38270 * 120.05109 * 0.02732 * 16 15 14 18 18 C 1.38170 * 120.02397 * 359.97438 * 17 16 15 19 19 C 1.38432 * 120.01370 * 279.72550 * 14 13 12 20 20 F 1.35102 * 120.02704 * 359.97438 * 19 14 13 21 21 H 0.96999 * 119.99720 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47066 * 59.99894 * 9 7 2 23 23 H 1.09002 * 109.47045 * 300.00443 * 9 7 2 24 24 H 1.00909 * 111.00262 * 56.04996 * 10 9 7 25 25 H 1.09002 * 109.46980 * 59.99769 * 11 10 9 26 26 H 1.09001 * 109.46628 * 300.00190 * 11 10 9 27 27 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 28 28 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 29 29 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 30 30 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 31 31 H 1.08002 * 119.98697 * 359.97438 * 15 14 13 32 32 H 1.07999 * 119.97411 * 180.02562 * 16 15 14 33 33 H 1.07995 * 119.98601 * 179.97438 * 17 16 15 34 34 H 1.08004 * 120.01264 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5054 -4.9071 0.0012 12 6 2.5302 -6.0430 0.0032 13 6 1.8008 -7.3880 0.0032 14 6 2.8103 -8.5069 0.0045 15 6 3.1182 -9.1589 1.1838 16 6 4.0437 -10.1855 1.1852 17 6 4.6629 -10.5612 0.0074 18 6 4.3567 -9.9109 -1.1726 19 6 3.4254 -8.8859 -1.1763 20 9 3.1208 -8.2534 -2.3306 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8399 -3.5484 0.7837 25 1 0.8814 -4.9817 -0.8895 26 1 0.8795 -4.9813 0.8905 27 1 3.1538 -5.9683 0.8940 28 1 3.1564 -5.9689 -0.8859 29 1 1.1769 -7.4630 -0.8875 30 1 1.1749 -7.4618 0.8925 31 1 2.6355 -8.8660 2.1044 32 1 4.2833 -10.6946 2.1070 33 1 5.3862 -11.3632 0.0098 34 1 4.8409 -10.2042 -2.0924 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583990380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:58 Heat of formation + Delta-G solvation = -41.222569 kcal Electronic energy + Delta-G solvation = -15660.074487 eV Core-core repulsion = 12892.342768 eV Total energy + Delta-G solvation = -2767.731718 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.91025 -39.26177 -36.12119 -33.91113 -32.30888 -30.75671 -29.88637 -26.84933 -24.58885 -22.92119 -21.97073 -21.14542 -20.77899 -17.65473 -16.60626 -16.39676 -15.90870 -15.61505 -15.08527 -14.58845 -14.39979 -13.94479 -13.49763 -13.36795 -13.17912 -12.66611 -12.55472 -12.03748 -11.69736 -11.56503 -11.39046 -11.18106 -10.86971 -10.68758 -10.49413 -10.34354 -9.86990 -9.17665 -9.08519 -8.73856 -8.46167 -7.25160 -6.01098 -4.02886 0.99947 1.03048 3.32684 3.39640 3.41062 3.45319 4.15780 4.44295 4.51166 4.59437 4.74489 5.00691 5.09980 5.23011 5.28360 5.34830 5.51028 5.66251 5.80608 5.85192 5.91405 5.98436 6.05569 6.16133 6.18437 6.24133 6.56211 6.59754 6.74440 7.28974 7.45131 7.81749 8.15752 8.43585 8.65433 9.06936 9.62014 11.10171 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.049824 B = 0.003634 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.841953 B = 7703.007484 C = 7758.717174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.692 5.692 11 C 0.060 3.940 12 C -0.109 4.109 13 C -0.081 4.081 14 C -0.107 4.107 15 C -0.091 4.091 16 C -0.131 4.131 17 C -0.101 4.101 18 C -0.155 4.155 19 C 0.101 3.899 20 F -0.134 7.134 21 H 0.261 0.739 22 H 0.028 0.972 23 H -0.014 1.014 24 H 0.327 0.673 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 -21.744 1.793 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.322 5.322 11 C -0.070 4.070 12 C -0.147 4.147 13 C -0.119 4.119 14 C -0.108 4.108 15 C -0.109 4.109 16 C -0.149 4.149 17 C -0.119 4.119 18 C -0.173 4.173 19 C 0.081 3.919 20 F -0.113 7.113 21 H 0.070 0.930 22 H 0.046 0.954 23 H 0.004 0.996 24 H 0.144 0.856 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.669 -21.571 1.051 22.603 hybrid contribution -0.016 0.981 0.671 1.188 sum 6.653 -20.590 1.722 21.707 Atomic orbital electron populations 1.69980 1.06094 1.26650 1.51104 1.25008 0.94896 0.99416 0.95384 0.86417 0.80072 0.83288 0.77486 1.19636 1.20977 1.21103 1.21248 0.93580 0.90273 1.50076 0.91896 1.19562 0.90634 0.87449 0.95751 1.60638 1.21343 1.01378 1.48835 1.21871 0.95216 0.90193 0.99707 1.21545 0.98523 0.92069 1.02584 1.20587 0.95858 0.92028 1.03449 1.20090 0.99611 0.98849 0.92218 1.21008 0.97467 0.95280 0.97183 1.21196 0.97365 0.97922 0.98397 1.20970 0.99573 0.99518 0.91876 1.21156 0.99101 0.97041 1.00037 1.17621 0.98105 0.94279 0.81865 1.91519 1.91902 1.80868 1.47004 0.92986 0.95428 0.99646 0.85636 0.91811 0.96476 0.92241 0.91161 0.90505 0.90542 0.85048 0.85497 0.85293 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.98 9.32 -34.44 -0.32 -15.30 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.19 5.25 5.44 -4.98 -0.03 5.22 16 10 N -0.69 -15.55 6.49 -115.06 -0.75 -16.29 16 11 C 0.06 1.11 5.69 -3.83 -0.02 1.08 16 12 C -0.11 -1.63 5.45 -26.74 -0.15 -1.78 16 13 C -0.08 -1.01 5.07 -27.88 -0.14 -1.16 16 14 C -0.11 -1.26 5.14 -104.55 -0.54 -1.79 16 15 C -0.09 -0.89 9.67 -39.59 -0.38 -1.27 16 16 C -0.13 -1.10 10.04 -39.58 -0.40 -1.49 16 17 C -0.10 -0.85 10.04 -39.59 -0.40 -1.24 16 18 C -0.15 -1.54 10.03 -39.52 -0.40 -1.94 16 19 C 0.10 1.24 7.24 -39.42 -0.29 0.95 16 20 F -0.13 -1.88 16.66 2.25 0.04 -1.84 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 23 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 24 H 0.33 6.97 8.72 -39.29 -0.34 6.63 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16 30 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 31 H 0.13 1.06 8.04 -52.49 -0.42 0.64 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 297.74 15.07 4.49 4.49 Total: -1.00 -31.55 297.74 -8.60 -40.15 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.94 Total: 0.35 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -3.15 Total: -17.24 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.01 Total: -42.95 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.55 -8.60 -40.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583990380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.075 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds