Wall clock time and date at job start Sun Mar 29 2020 21:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46797 * 2 1 4 4 C 1.37100 * 120.00094 * 264.48469 * 3 2 1 5 5 H 1.08000 * 119.99804 * 138.94886 * 4 3 2 6 6 C 1.38954 * 119.99660 * 318.95576 * 4 3 2 7 7 N 1.31401 * 120.00308 * 341.76658 * 6 4 3 8 8 Si 1.86805 * 119.99533 * 161.77523 * 6 4 3 9 9 H 1.48499 * 109.47032 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47114 * 119.99844 * 8 6 4 11 11 H 1.48503 * 109.46748 * 239.99740 * 8 6 4 12 12 C 1.34774 * 120.00099 * 84.76814 * 3 2 1 13 13 O 1.21295 * 120.00547 * 179.72195 * 12 3 2 14 14 C 1.50700 * 119.99980 * 359.72016 * 12 3 2 15 15 C 1.50702 * 109.47171 * 180.02562 * 14 12 3 16 16 O 1.34301 * 125.78621 * 269.68851 * 15 14 12 17 17 C 1.34311 * 109.47169 * 179.82806 * 16 15 14 18 18 C 1.34503 * 108.42258 * 0.43942 * 17 16 15 19 19 C 1.34513 * 125.79115 * 90.00207 * 15 14 12 20 20 C 1.50699 * 126.57968 * 0.03316 * 19 15 14 21 21 H 1.08992 * 109.47512 * 59.99710 * 1 2 3 22 22 H 1.09000 * 109.46980 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47096 * 299.99778 * 1 2 3 24 24 H 1.08991 * 109.46780 * 239.99799 * 2 1 3 25 25 H 1.08999 * 109.46878 * 120.00128 * 2 1 3 26 26 H 0.97006 * 120.00163 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47102 * 300.00088 * 14 12 3 28 28 H 1.08997 * 109.47711 * 59.99887 * 14 12 3 29 29 H 1.08001 * 125.78615 * 180.14151 * 17 16 15 30 30 H 1.08007 * 126.58279 * 179.71885 * 18 17 16 31 31 H 1.08993 * 109.47488 * 90.00030 * 20 19 15 32 32 H 1.08998 * 109.47332 * 210.00589 * 20 19 15 33 33 H 1.09003 * 109.47273 * 330.00169 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3543 1.9895 -1.1818 5 1 2.0819 3.0201 -1.3553 6 6 3.0454 1.2800 -2.1564 7 7 3.6854 0.1777 -1.8370 8 14 3.0646 1.8933 -3.9208 9 1 2.2736 3.1463 -4.0179 10 1 4.4651 2.1580 -4.3376 11 1 2.4699 0.8629 -4.8095 12 6 2.1425 2.0520 1.1623 13 8 2.5515 3.1940 1.1629 14 6 1.7732 1.3834 2.4614 15 6 2.0018 2.3413 3.6021 16 8 3.1403 2.4710 4.3027 17 6 2.9840 3.4209 5.2392 18 6 1.7315 3.9032 5.1505 19 6 1.0983 3.2073 4.0952 20 6 -0.3174 3.3985 3.6155 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 4.1675 -0.3178 -2.5174 27 1 0.7226 1.0941 2.4353 28 1 2.3909 0.4964 2.6020 29 1 3.7350 3.7397 5.9469 30 1 1.2934 4.6741 5.7673 31 1 -0.9806 2.7302 4.1647 32 1 -0.6218 4.4315 3.7838 33 1 -0.3740 3.1720 2.5507 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:08 Heat of formation + Delta-G solvation = -23.026521 kcal Electronic energy + Delta-G solvation = -17079.878994 eV Core-core repulsion = 14300.563526 eV Total energy + Delta-G solvation = -2779.315468 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.15118 -38.49212 -34.98928 -33.80767 -32.24239 -31.22725 -29.44059 -28.46418 -26.03791 -24.43665 -22.27937 -21.10125 -19.86917 -18.60541 -16.82784 -16.47817 -16.13979 -15.28797 -14.93676 -14.42389 -14.21403 -13.50800 -13.11700 -12.87613 -12.82532 -12.56695 -12.33453 -12.11545 -11.89084 -11.73363 -11.28896 -11.09315 -10.98377 -10.96608 -10.37635 -10.30242 -10.10192 -9.21407 -8.92205 -8.49487 -7.83998 -7.41986 -6.31300 -3.99858 2.17743 2.97427 3.16778 3.27159 3.33402 3.44176 3.91839 4.18577 4.87993 5.02686 5.10602 5.27555 5.33255 5.68024 5.74369 5.77507 5.80027 5.92645 5.98856 6.12344 6.17980 6.24813 6.31906 6.42259 6.49878 6.60102 6.85621 6.98226 7.20723 7.59619 7.60433 8.30625 8.52602 9.20542 9.39313 10.01939 10.73927 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034940 B = 0.006895 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.170400 B = 4060.226727 C = 4260.870170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.101 3.899 3 N -0.441 5.441 4 C -0.307 4.307 5 H 0.088 0.912 6 C 0.038 3.962 7 N -0.872 5.872 8 Si 0.918 3.082 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.465 3.535 13 O -0.569 6.569 14 C -0.063 4.063 15 C 0.033 3.967 16 O -0.172 6.172 17 C -0.052 4.052 18 C -0.209 4.209 19 C -0.184 4.184 20 C -0.078 4.078 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.105 0.895 25 H 0.049 0.951 26 H 0.267 0.733 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.197 0.803 30 H 0.142 0.858 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.175 -0.679 9.084 11.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.024 4.024 3 N -0.162 5.162 4 C -0.435 4.435 5 H 0.106 0.894 6 C -0.166 4.166 7 N -0.510 5.510 8 Si 0.744 3.256 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.252 3.748 13 O -0.451 6.451 14 C -0.104 4.104 15 C -0.018 4.018 16 O -0.067 6.067 17 C -0.120 4.120 18 C -0.228 4.228 19 C -0.185 4.185 20 C -0.135 4.135 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.123 0.877 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.213 0.787 30 H 0.160 0.840 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.598 -0.424 8.905 10.527 hybrid contribution 0.075 0.274 -0.701 0.756 sum -5.523 -0.150 8.204 9.891 Atomic orbital electron populations 1.22237 0.98159 1.00462 1.01567 1.21491 0.91654 0.85600 1.03605 1.43433 1.56308 1.11793 1.04617 1.19423 1.34698 0.98585 0.90822 0.89394 1.25432 0.94011 0.96571 1.00606 1.69933 1.29531 1.17534 1.33954 0.86010 0.78152 0.79013 0.82388 1.19185 1.20750 1.20602 1.20118 0.82335 0.88055 0.84268 1.90559 1.49291 1.18695 1.86535 1.20291 1.03556 0.96686 0.89821 1.21642 0.83701 1.00885 0.95534 1.83998 1.36154 1.47985 1.38597 1.23792 0.98833 0.93774 0.95591 1.21573 0.95158 1.04314 1.01803 1.20048 0.98281 1.00142 1.00058 1.20104 0.90879 1.01490 1.01025 0.92296 0.92968 0.93895 0.87750 0.93309 0.92313 0.87529 0.88430 0.78659 0.84048 0.92125 0.91956 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 10.15 37.16 0.38 -2.47 16 2 C 0.10 2.13 5.41 -4.04 -0.02 2.11 16 3 N -0.44 -11.18 2.50 -114.81 -0.29 -11.46 16 4 C -0.31 -8.57 8.84 -14.93 -0.13 -8.70 16 5 H 0.09 2.57 7.82 -52.49 -0.41 2.16 16 6 C 0.04 1.01 4.95 -17.47 -0.09 0.93 16 7 N -0.87 -23.67 11.61 55.50 0.64 -23.02 16 8 Si 0.92 20.72 29.59 -169.99 -5.03 15.69 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 C 0.47 11.62 7.59 -10.99 -0.08 11.54 16 13 O -0.57 -16.56 15.95 5.54 0.09 -16.47 16 14 C -0.06 -1.23 4.46 -29.03 -0.13 -1.36 16 15 C 0.03 0.65 5.81 -35.62 -0.21 0.45 16 16 O -0.17 -3.34 10.65 5.69 0.06 -3.28 16 17 C -0.05 -0.82 12.09 29.41 0.36 -0.46 16 18 C -0.21 -3.29 10.87 -39.71 -0.43 -3.72 16 19 C -0.18 -3.27 6.16 -104.74 -0.65 -3.92 16 20 C -0.08 -1.17 9.99 36.01 0.36 -0.81 16 21 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.04 0.67 6.58 -51.93 -0.34 0.33 16 24 H 0.10 2.45 5.76 -51.93 -0.30 2.15 16 25 H 0.05 0.93 6.66 -51.93 -0.35 0.59 16 26 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.11 1.75 6.14 -51.93 -0.32 1.43 16 28 H 0.10 1.76 7.40 -51.93 -0.38 1.37 16 29 H 0.20 2.14 8.06 -52.49 -0.42 1.71 16 30 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.07 7.78 -51.93 -0.40 0.66 16 LS Contribution 283.08 15.07 4.27 4.27 Total: -1.00 -32.98 283.08 -5.08 -38.06 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.18 Total: 2.64 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -0.65 Total: -6.42 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.36 Total: -34.49 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.15 Total: -19.75 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.98 -5.08 -38.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.034 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds