Wall clock time and date at job start Sun Mar 29 2020 21:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46797 * 2 1 4 4 C 1.37100 * 120.00094 * 264.48469 * 3 2 1 5 5 H 1.08000 * 119.99804 * 138.94886 * 4 3 2 6 6 C 1.38954 * 119.99660 * 318.95576 * 4 3 2 7 7 N 1.31401 * 120.00308 * 341.76658 * 6 4 3 8 8 Si 1.86805 * 119.99533 * 161.77523 * 6 4 3 9 9 H 1.48499 * 109.47032 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47114 * 119.99844 * 8 6 4 11 11 H 1.48503 * 109.46748 * 239.99740 * 8 6 4 12 12 C 1.34774 * 120.00099 * 84.76814 * 3 2 1 13 13 O 1.21295 * 120.00547 * 179.72195 * 12 3 2 14 14 C 1.50700 * 119.99980 * 359.72016 * 12 3 2 15 15 C 1.50702 * 109.47171 * 180.02562 * 14 12 3 16 16 O 1.34301 * 125.78621 * 269.68851 * 15 14 12 17 17 C 1.34311 * 109.47169 * 179.82806 * 16 15 14 18 18 C 1.34503 * 108.42258 * 0.43942 * 17 16 15 19 19 C 1.34513 * 125.79115 * 90.00207 * 15 14 12 20 20 C 1.50699 * 126.57968 * 0.03316 * 19 15 14 21 21 H 1.08992 * 109.47512 * 59.99710 * 1 2 3 22 22 H 1.09000 * 109.46980 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47096 * 299.99778 * 1 2 3 24 24 H 1.08991 * 109.46780 * 239.99799 * 2 1 3 25 25 H 1.08999 * 109.46878 * 120.00128 * 2 1 3 26 26 H 0.97006 * 120.00163 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47102 * 300.00088 * 14 12 3 28 28 H 1.08997 * 109.47711 * 59.99887 * 14 12 3 29 29 H 1.08001 * 125.78615 * 180.14151 * 17 16 15 30 30 H 1.08007 * 126.58279 * 179.71885 * 18 17 16 31 31 H 1.08993 * 109.47488 * 90.00030 * 20 19 15 32 32 H 1.08998 * 109.47332 * 210.00589 * 20 19 15 33 33 H 1.09003 * 109.47273 * 330.00169 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3543 1.9895 -1.1818 5 1 2.0819 3.0201 -1.3553 6 6 3.0454 1.2800 -2.1564 7 7 3.6854 0.1777 -1.8370 8 14 3.0646 1.8933 -3.9208 9 1 2.2736 3.1463 -4.0179 10 1 4.4651 2.1580 -4.3376 11 1 2.4699 0.8629 -4.8095 12 6 2.1425 2.0520 1.1623 13 8 2.5515 3.1940 1.1629 14 6 1.7732 1.3834 2.4614 15 6 2.0018 2.3413 3.6021 16 8 3.1403 2.4710 4.3027 17 6 2.9840 3.4209 5.2392 18 6 1.7315 3.9032 5.1505 19 6 1.0983 3.2073 4.0952 20 6 -0.3174 3.3985 3.6155 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 4.1675 -0.3178 -2.5174 27 1 0.7226 1.0941 2.4353 28 1 2.3909 0.4964 2.6020 29 1 3.7350 3.7397 5.9469 30 1 1.2934 4.6741 5.7673 31 1 -0.9806 2.7302 4.1647 32 1 -0.6218 4.4315 3.7838 33 1 -0.3740 3.1720 2.5507 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:08 Heat of formation + Delta-G solvation = -43.968812 kcal Electronic energy + Delta-G solvation = -17080.787120 eV Core-core repulsion = 14300.563526 eV Total energy + Delta-G solvation = -2780.223594 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.46416 -40.38373 -36.92016 -35.15606 -34.13948 -32.73985 -31.13824 -29.79464 -27.59302 -26.21182 -23.92657 -22.39089 -21.46088 -20.17449 -18.76555 -17.96829 -17.72441 -17.08475 -16.56846 -16.02460 -15.97019 -15.06251 -14.67470 -14.52238 -14.15555 -13.91065 -13.65150 -13.60609 -13.51158 -13.25159 -12.92212 -12.86684 -12.63890 -12.32127 -12.28224 -12.06013 -11.77195 -10.89739 -10.46652 -10.45068 -9.41253 -9.19746 -8.34671 -6.11781 0.84192 1.36046 1.40594 1.54332 1.71914 2.02043 2.18364 2.32426 3.00183 3.13456 3.77013 4.03418 4.08564 4.13840 4.29624 4.31145 4.49494 4.65268 4.66027 4.81613 4.85396 4.93990 4.98649 5.07934 5.21397 5.32312 5.36123 5.45921 5.57016 5.75549 6.23300 6.30197 6.54908 7.17865 7.44012 8.05739 8.69062 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034940 B = 0.006895 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.170400 B = 4060.226727 C = 4260.870170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.098 3.902 3 N -0.452 5.452 4 C -0.342 4.342 5 H 0.060 0.940 6 C 0.004 3.996 7 N -0.892 5.892 8 Si 0.982 3.018 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.261 1.261 12 C 0.452 3.548 13 O -0.623 6.623 14 C -0.047 4.047 15 C -0.015 4.015 16 O -0.199 6.199 17 C -0.049 4.049 18 C -0.220 4.220 19 C -0.186 4.186 20 C -0.078 4.078 21 H 0.042 0.958 22 H 0.087 0.913 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.273 0.727 27 H 0.136 0.864 28 H 0.108 0.892 29 H 0.239 0.761 30 H 0.174 0.826 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 -1.140 9.969 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.025 4.025 3 N -0.171 5.171 4 C -0.470 4.470 5 H 0.078 0.922 6 C -0.198 4.198 7 N -0.529 5.529 8 Si 0.805 3.195 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.185 1.185 12 C 0.241 3.759 13 O -0.510 6.510 14 C -0.087 4.087 15 C -0.064 4.064 16 O -0.097 6.097 17 C -0.116 4.116 18 C -0.239 4.239 19 C -0.188 4.188 20 C -0.135 4.135 21 H 0.061 0.939 22 H 0.106 0.894 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.154 0.846 28 H 0.126 0.874 29 H 0.255 0.745 30 H 0.191 0.809 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.658 -0.934 9.792 11.878 hybrid contribution 0.440 0.453 -0.903 1.102 sum -6.218 -0.481 8.889 10.858 Atomic orbital electron populations 1.22127 0.94837 1.02774 1.01567 1.21638 0.94366 0.83242 1.03287 1.43732 1.56070 1.13113 1.04207 1.19376 1.36552 0.98144 0.92902 0.92233 1.26169 0.93046 0.96600 1.04022 1.69996 1.29447 1.18145 1.35326 0.85069 0.78011 0.78741 0.77659 1.19566 1.20610 1.18518 1.21027 0.81327 0.87580 0.85955 1.90500 1.51712 1.21153 1.87612 1.20129 1.05343 0.96409 0.86770 1.21764 0.84681 1.03045 0.96959 1.83964 1.36599 1.49423 1.39672 1.24763 1.00033 0.92033 0.94732 1.22006 0.95197 1.04935 1.01753 1.20580 0.99194 0.99043 0.99963 1.20187 0.90074 1.03124 1.00103 0.93874 0.89402 0.92331 0.90189 0.91397 0.91695 0.84595 0.87401 0.74507 0.80877 0.89170 0.90605 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.05 10.15 71.98 0.73 -4.32 16 2 C 0.10 4.10 5.41 86.38 0.47 4.57 16 3 N -0.45 -23.40 2.50 -635.55 -1.59 -24.99 16 4 C -0.34 -19.72 8.84 84.04 0.74 -18.98 16 5 H 0.06 3.69 7.82 -2.91 -0.02 3.67 16 6 C 0.00 0.23 4.95 84.93 0.42 0.65 16 7 N -0.89 -48.78 11.61 21.66 0.25 -48.52 16 8 Si 0.98 42.89 29.59 68.60 2.03 44.92 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 12 C 0.45 23.15 7.59 87.66 0.66 23.82 16 13 O -0.62 -37.88 15.95 -3.08 -0.05 -37.92 16 14 C -0.05 -1.81 4.46 29.10 0.13 -1.68 16 15 C -0.01 -0.57 5.81 24.83 0.14 -0.42 16 16 O -0.20 -7.70 10.65 -2.54 -0.03 -7.73 16 17 C -0.05 -1.44 12.09 66.96 0.81 -0.63 16 18 C -0.22 -6.42 10.87 22.19 0.24 -6.18 16 19 C -0.19 -6.38 6.16 -19.94 -0.12 -6.50 16 20 C -0.08 -2.20 9.99 71.24 0.71 -1.49 16 21 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.06 1.71 6.58 -2.39 -0.02 1.70 16 24 H 0.08 3.77 5.76 -2.39 -0.01 3.76 16 25 H 0.07 2.53 6.66 -2.39 -0.02 2.52 16 26 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 27 H 0.14 4.26 6.14 -2.39 -0.01 4.24 16 28 H 0.11 3.84 7.40 -2.39 -0.02 3.82 16 29 H 0.24 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.17 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.48 7.78 -2.39 -0.02 1.46 16 Total: -1.00 -74.50 283.08 6.66 -67.84 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.11 Total: 17.59 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.94 Total: -11.17 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -1.34 Total: -73.52 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -0.08 Total: -45.65 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -74.50 6.66 -67.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.867 kcal (2) G-P(sol) polarization free energy of solvation -74.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds