Wall clock time and date at job start Sun Mar 29 2020 22:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47154 * 2 1 4 4 C 1.52999 * 109.47077 * 120.00310 * 2 1 3 5 5 C 1.50702 * 109.47085 * 240.00400 * 2 1 3 6 6 N 1.35942 * 126.61486 * 1.76817 * 5 2 1 7 7 H 0.96999 * 126.18494 * 0.02562 * 6 5 2 8 8 C 1.35860 * 107.63517 * 179.97438 * 6 5 2 9 9 N 1.30157 * 109.05736 * 0.02562 * 8 6 5 10 10 C 1.35751 * 108.98800 * 359.75902 * 9 8 6 11 11 C 1.47242 * 126.22622 * 180.28598 * 10 9 8 12 12 O 1.21651 * 120.00231 * 174.56994 * 11 10 9 13 13 N 1.34775 * 119.99690 * 354.57449 * 11 10 9 14 14 C 1.36953 * 119.99641 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00707 * 359.97438 * 14 13 11 16 16 C 1.38987 * 119.99910 * 180.02562 * 14 13 11 17 17 N 1.31406 * 119.99840 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00152 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46795 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47164 * 119.99624 * 18 16 14 21 21 H 1.48494 * 109.47105 * 239.99723 * 18 16 14 22 22 H 1.09004 * 109.47092 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47450 * 60.00411 * 1 2 3 24 24 H 1.09004 * 109.47489 * 299.99829 * 1 2 3 25 25 H 1.09001 * 109.46753 * 70.18829 * 3 2 1 26 26 H 1.08997 * 109.47360 * 190.19255 * 3 2 1 27 27 H 1.09002 * 109.47069 * 310.19386 * 3 2 1 28 28 H 1.08998 * 109.47548 * 65.27243 * 4 2 1 29 29 H 1.09000 * 109.46821 * 185.27219 * 4 2 1 30 30 H 1.09006 * 109.47108 * 305.26824 * 4 2 1 31 31 H 1.08004 * 125.47520 * 180.02562 * 8 6 5 32 32 H 0.96998 * 120.00077 * 359.97438 * 13 11 10 33 33 H 0.97000 * 119.99690 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0323 -0.7103 -1.2305 6 7 1.2743 -1.2451 -2.2243 7 1 0.3055 -1.2392 -2.2719 8 6 2.1190 -1.7884 -3.1393 9 7 3.3461 -1.6074 -2.7450 10 6 3.3364 -0.9365 -1.5648 11 6 4.5176 -0.5286 -0.7861 12 8 4.3825 0.1562 0.2103 13 7 5.7485 -0.9139 -1.1772 14 6 6.8471 -0.5350 -0.4525 15 1 6.7272 0.0729 0.4321 16 6 8.1165 -0.9318 -0.8561 17 7 8.2624 -1.6710 -1.9327 18 14 9.6150 -0.4144 0.1318 19 1 9.1840 0.4088 1.2903 20 1 10.3273 -1.6225 0.6201 21 1 10.5250 0.3823 -0.7298 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 0.5138 0.8900 25 1 1.8327 1.9011 0.9669 26 1 3.1147 1.4480 -0.1818 27 1 1.5358 2.0061 -0.7850 28 1 1.7558 -1.7726 1.2032 29 1 3.1259 -0.6402 1.2976 30 1 1.6016 -0.2649 2.1367 31 1 1.8202 -2.2899 -4.0479 32 1 5.8562 -1.4602 -1.9714 33 1 9.1483 -1.9483 -2.2141 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601026180.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:16 Heat of formation + Delta-G solvation = 11.037213 kcal Electronic energy + Delta-G solvation = -17212.508458 eV Core-core repulsion = 14466.962855 eV Total energy + Delta-G solvation = -2745.545603 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.72109 -37.79247 -36.28972 -33.81401 -32.11445 -31.03933 -28.65278 -26.94395 -26.65988 -25.16898 -22.35254 -21.47645 -20.05977 -18.42291 -17.65186 -17.28298 -15.28875 -14.83675 -14.51842 -14.27308 -14.19287 -13.94376 -13.71988 -13.12302 -12.92142 -12.37583 -12.13207 -11.75500 -11.52583 -11.21987 -10.98862 -10.84881 -10.58039 -10.43577 -10.23231 -10.17976 -9.63313 -9.56089 -9.29840 -8.23514 -7.91702 -7.80707 -6.37833 -3.73531 2.24330 3.06307 3.29875 3.30264 3.34611 3.38485 4.21837 4.53348 4.82951 4.96728 5.10819 5.22204 5.36097 5.44881 5.54082 5.78627 5.80927 5.93848 6.01520 6.20766 6.26291 6.37087 6.48602 6.52318 6.64014 7.11121 7.18721 7.21785 7.59016 7.64844 8.12349 8.35844 8.74769 9.22987 9.66873 10.19774 10.79118 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034456 B = 0.007294 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.436503 B = 3837.839155 C = 4456.177108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.022 3.978 3 C -0.152 4.152 4 C -0.157 4.157 5 C 0.045 3.955 6 N -0.573 5.573 7 H 0.414 0.586 8 C 0.167 3.833 9 N -0.465 5.465 10 C -0.020 4.020 11 C 0.507 3.493 12 O -0.585 6.585 13 N -0.533 5.533 14 C -0.298 4.298 15 H 0.108 0.892 16 C 0.023 3.977 17 N -0.888 5.888 18 Si 0.931 3.069 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.281 1.281 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.109 0.891 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.113 0.887 30 H 0.048 0.952 31 H 0.206 0.794 32 H 0.402 0.598 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.135 0.551 -0.311 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.209 4.209 4 C -0.214 4.214 5 C -0.074 4.074 6 N -0.177 5.177 7 H 0.251 0.749 8 C -0.117 4.117 9 N -0.186 5.186 10 C -0.149 4.149 11 C 0.294 3.706 12 O -0.474 6.474 13 N -0.166 5.166 14 C -0.428 4.428 15 H 0.125 0.875 16 C -0.180 4.180 17 N -0.528 5.528 18 Si 0.758 3.242 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.207 1.207 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.128 0.872 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.131 0.869 30 H 0.067 0.933 31 H 0.222 0.778 32 H 0.237 0.763 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.196 0.641 -0.182 13.213 hybrid contribution -0.589 -0.075 -0.002 0.594 sum -13.786 0.566 -0.184 13.798 Atomic orbital electron populations 1.22035 0.95721 1.01099 1.01967 1.18889 0.93116 0.95764 0.90140 1.22214 1.06402 0.92237 1.00039 1.22256 1.07197 0.97717 0.94227 1.21186 0.90921 1.02424 0.92896 1.43198 1.09918 1.45696 1.18927 0.74854 1.24983 0.85289 1.04072 0.97397 1.70661 1.20526 1.15880 1.11485 1.20907 0.93298 1.05578 0.95103 1.16457 0.81761 0.86064 0.86317 1.90361 1.84819 1.43840 1.28343 1.41801 1.04315 1.44529 1.25919 1.19853 0.83774 1.30213 1.08968 0.87452 1.25370 0.99356 0.96625 0.96672 1.69672 1.24516 1.35246 1.23375 0.85779 0.80592 0.78342 0.79492 1.19066 1.20719 1.20717 0.93136 0.93187 0.91713 0.92999 0.87241 0.94736 0.94397 0.86883 0.93295 0.77790 0.76315 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 7.55 37.16 0.28 -1.48 16 2 C 0.02 0.36 0.75 -155.66 -0.12 0.24 16 3 C -0.15 -2.58 8.18 37.16 0.30 -2.27 16 4 C -0.16 -2.68 8.19 37.16 0.30 -2.38 16 5 C 0.04 0.79 5.61 -81.39 -0.46 0.33 16 6 N -0.57 -7.73 5.86 -9.97 -0.06 -7.79 16 7 H 0.41 3.86 8.13 -40.82 -0.33 3.53 16 8 C 0.17 2.46 13.03 -89.91 -1.17 1.29 16 9 N -0.47 -9.45 11.01 -11.04 -0.12 -9.57 16 10 C -0.02 -0.43 6.78 -83.10 -0.56 -0.99 16 11 C 0.51 12.85 7.31 -12.60 -0.09 12.76 16 12 O -0.59 -15.06 9.62 5.23 0.05 -15.01 16 13 N -0.53 -14.62 5.28 -12.00 -0.06 -14.68 16 14 C -0.30 -8.47 9.68 -14.99 -0.15 -8.62 16 15 H 0.11 3.10 7.15 -52.49 -0.38 2.73 16 16 C 0.02 0.63 5.50 -17.46 -0.10 0.53 16 17 N -0.89 -25.09 13.05 55.50 0.72 -24.36 16 18 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.52 8.06 -51.93 -0.42 0.10 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 26 H 0.11 2.31 4.68 -51.93 -0.24 2.06 16 27 H 0.03 0.52 8.11 -51.93 -0.42 0.10 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.11 2.39 4.64 -51.93 -0.24 2.15 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.21 2.00 8.06 -52.48 -0.42 1.57 16 32 H 0.40 11.21 7.62 -40.82 -0.31 10.90 16 33 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 273.68 15.07 4.12 4.12 Total: -1.00 -31.73 273.68 -6.13 -37.86 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -4.01 Total: 13.86 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.75 Total: -0.58 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.48 Total: -56.41 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.05 Total: -15.01 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.73 -6.13 -37.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601026180.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.900 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds