Wall clock time and date at job start Sun Mar 29 2020 22:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33322 * 126.10673 * 2 1 4 4 C 1.30860 * 109.68432 * 179.97438 * 3 2 1 5 5 N 1.34496 * 109.16130 * 359.76074 * 4 3 2 6 6 H 0.96999 * 126.46964 * 180.25085 * 5 4 3 7 7 C 1.36660 * 126.10715 * 179.97438 * 2 1 3 8 8 C 1.46765 * 126.84438 * 359.96563 * 7 2 1 9 9 O 1.21676 * 119.99997 * 7.04934 * 8 7 2 10 10 N 1.34778 * 119.99945 * 187.05339 * 8 7 2 11 11 C 1.46503 * 120.00017 * 6.25511 * 10 8 7 12 12 C 1.46495 * 119.99936 * 186.25070 * 10 8 7 13 13 H 1.09000 * 109.47537 * 0.02562 * 12 10 8 14 14 C 1.53011 * 109.47143 * 120.00042 * 12 10 8 15 15 C 1.50699 * 109.47508 * 239.99886 * 12 10 8 16 16 H 1.08001 * 119.99436 * 0.02562 * 15 12 10 17 17 C 1.37875 * 120.00319 * 179.97438 * 15 12 10 18 18 N 1.31519 * 119.99961 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00225 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46876 * 60.00189 * 19 17 15 21 21 H 1.48495 * 109.47248 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47108 * 300.00147 * 19 17 15 23 23 H 1.08999 * 109.46914 * 270.00063 * 1 2 3 24 24 H 1.09000 * 109.47090 * 30.00299 * 1 2 3 25 25 H 1.08993 * 109.46997 * 150.00703 * 1 2 3 26 26 H 1.08000 * 125.41617 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.46874 * 275.84335 * 11 10 8 28 28 H 1.09003 * 109.47111 * 155.84710 * 11 10 8 29 29 H 1.08995 * 109.47157 * 35.84222 * 11 10 8 30 30 H 1.09000 * 109.46513 * 59.99851 * 14 12 10 31 31 H 1.08993 * 109.47064 * 179.97438 * 14 12 10 32 32 H 1.08998 * 109.47119 * 300.00507 * 14 12 10 33 33 H 0.97000 * 119.99959 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7072 0.0006 5 7 3.6121 -0.6362 0.0062 6 1 4.4188 -1.1748 0.0113 7 6 2.3123 -1.1041 0.0005 8 6 1.8820 -2.5073 0.0018 9 8 0.7038 -2.7824 -0.1267 10 7 2.7920 -3.4910 0.1455 11 6 4.1890 -3.1598 0.4371 12 6 2.3842 -4.8915 0.0102 13 1 1.3168 -4.9400 -0.2051 14 6 3.1647 -5.5418 -1.1340 15 6 2.6718 -5.6249 1.2949 16 1 3.1137 -5.1001 2.1289 17 6 2.3697 -6.9656 1.4059 18 7 1.8310 -7.6046 0.3904 19 14 2.7255 -7.8745 2.9986 20 1 1.9679 -7.2430 4.1087 21 1 2.3122 -9.2941 2.8613 22 1 4.1798 -7.8090 3.2916 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5137 26 1 4.3970 1.3745 0.0011 27 1 4.7114 -2.9372 -0.4934 28 1 4.6681 -4.0063 0.9291 29 1 4.2269 -2.2896 1.0922 30 1 4.2322 -5.4933 -0.9190 31 1 2.8616 -6.5839 -1.2343 32 1 2.9568 -5.0114 -2.0632 33 1 1.6188 -8.5478 0.4684 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602092426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:36 Heat of formation + Delta-G solvation = 34.134212 kcal Electronic energy + Delta-G solvation = -17118.618185 eV Core-core repulsion = 14374.074143 eV Total energy + Delta-G solvation = -2744.544042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.08566 -38.75042 -35.64722 -33.55486 -32.49181 -30.97054 -29.31645 -27.31748 -26.12649 -25.29425 -22.94886 -21.64671 -19.89981 -19.21384 -17.19998 -16.61921 -15.98606 -15.40952 -15.29654 -14.49804 -14.21817 -14.11831 -13.10549 -12.75015 -12.70036 -12.58542 -12.48211 -11.86640 -11.75430 -11.58023 -11.11855 -10.93758 -10.79717 -10.37349 -10.25349 -10.10277 -9.81825 -9.30346 -9.14786 -8.50305 -8.32082 -7.73170 -6.14292 -4.23017 1.61936 3.03690 3.09843 3.23225 3.29171 3.30701 3.76295 3.88191 4.33763 4.58150 4.95821 5.17093 5.20887 5.31406 5.43121 5.57317 5.91169 6.04616 6.10057 6.15372 6.36757 6.64299 6.71834 6.82252 6.94555 7.25138 7.35399 7.42177 7.61975 7.90988 8.04970 8.10495 8.36226 8.72692 8.89199 9.43598 10.91063 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.037243 B = 0.006639 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.648142 B = 4216.276368 C = 4360.770760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.079 3.921 3 N -0.502 5.502 4 C 0.196 3.804 5 N -0.559 5.559 6 H 0.426 0.574 7 C -0.072 4.072 8 C 0.581 3.419 9 O -0.530 6.530 10 N -0.590 5.590 11 C 0.069 3.931 12 C 0.259 3.741 13 H 0.067 0.933 14 C -0.147 4.147 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.277 1.277 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.210 0.790 27 H 0.043 0.957 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.029 0.971 31 H 0.096 0.904 32 H 0.011 0.989 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 11.098 -1.036 12.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.055 4.055 3 N -0.223 5.223 4 C -0.088 4.088 5 N -0.171 5.171 6 H 0.272 0.728 7 C -0.188 4.188 8 C 0.367 3.633 9 O -0.407 6.407 10 N -0.321 5.321 11 C -0.075 4.075 12 C 0.160 3.840 13 H 0.085 0.915 14 C -0.205 4.205 15 C -0.569 4.569 16 H 0.077 0.923 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.203 1.203 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.110 0.890 26 H 0.227 0.773 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.114 0.886 32 H 0.031 0.969 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.391 11.485 -1.164 12.740 hybrid contribution 1.315 -1.489 0.916 2.187 sum 6.705 9.996 -0.248 12.039 Atomic orbital electron populations 1.20267 0.86728 1.03539 1.02807 1.21012 0.96823 0.86704 1.00938 1.70050 1.00520 1.30812 1.20905 1.25023 0.97320 0.82693 1.03765 1.44335 1.08747 1.08727 1.55264 0.72836 1.21379 0.83871 0.96036 1.17564 1.16917 0.86061 0.82300 0.78009 1.90763 1.16211 1.82397 1.51324 1.48174 1.07222 1.08796 1.67957 1.21872 0.84686 1.02070 0.98913 1.19007 0.97159 0.73131 0.94717 0.91547 1.22113 0.98594 1.04043 0.95799 1.21251 1.42686 0.94496 0.98427 0.92318 1.24886 0.94678 0.97326 0.96749 1.69860 1.41940 1.10359 1.30250 0.86534 0.78590 0.78685 0.83458 1.20170 1.21066 1.20271 0.91140 0.91535 0.88966 0.77337 0.93838 0.88612 0.92898 0.95203 0.88587 0.96944 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 9.96 36.01 0.36 -0.84 16 2 C 0.08 1.36 7.14 -82.52 -0.59 0.78 16 3 N -0.50 -7.88 11.20 -10.64 -0.12 -8.00 16 4 C 0.20 2.35 13.01 -90.57 -1.18 1.17 16 5 N -0.56 -7.29 5.14 -10.79 -0.06 -7.35 16 6 H 0.43 4.40 5.09 -40.82 -0.21 4.20 16 7 C -0.07 -1.27 6.64 -82.14 -0.55 -1.82 16 8 C 0.58 12.37 7.63 -12.81 -0.10 12.27 16 9 O -0.53 -12.96 14.14 5.21 0.07 -12.88 16 10 N -0.59 -12.35 2.75 -176.77 -0.49 -12.84 16 11 C 0.07 1.08 7.75 59.85 0.46 1.54 16 12 C 0.26 6.47 2.62 -69.08 -0.18 6.29 16 13 H 0.07 1.92 6.92 -51.93 -0.36 1.56 16 14 C -0.15 -3.40 8.97 37.16 0.33 -3.07 16 15 C -0.53 -14.00 7.95 -34.44 -0.27 -14.28 16 16 H 0.06 1.52 7.43 -52.49 -0.39 1.13 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.89 -24.58 11.32 55.43 0.63 -23.95 16 19 Si 0.90 20.67 29.54 -169.99 -5.02 15.64 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.09 1.60 6.36 -51.93 -0.33 1.27 16 26 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.04 0.56 7.52 -51.93 -0.39 0.17 16 28 H 0.10 1.58 7.11 -51.93 -0.37 1.21 16 29 H 0.05 0.70 5.64 -51.93 -0.29 0.41 16 30 H 0.03 0.63 7.67 -51.93 -0.40 0.23 16 31 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 273.00 15.07 4.11 4.11 Total: -1.00 -31.96 273.00 -6.55 -38.51 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -3.88 Total: 3.04 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.80 Total: 3.72 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.03 Total: -52.15 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.07 Total: -12.88 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.96 -6.55 -38.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602092426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.640 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds