Wall clock time and date at job start Sun Mar 29 2020 22:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 C 1.50702 * 109.47259 * 180.02562 * 3 2 1 5 5 C 1.35349 * 126.38068 * 275.30255 * 4 3 2 6 6 C 1.41538 * 105.50448 * 180.14013 * 5 4 3 7 7 C 1.47612 * 126.52508 * 179.84309 * 6 5 4 8 8 O 1.21603 * 120.00149 * 4.95215 * 7 6 5 9 9 N 1.34776 * 120.00122 * 184.95629 * 7 6 5 10 10 C 1.46502 * 120.00077 * 5.13662 * 9 7 6 11 11 C 1.36914 * 119.99794 * 185.41657 * 9 7 6 12 12 H 1.07999 * 120.00307 * 322.08920 * 11 9 7 13 13 C 1.39022 * 119.99529 * 142.09202 * 11 9 7 14 14 N 1.31379 * 120.00277 * 349.78248 * 13 11 9 15 15 Si 1.86798 * 119.99710 * 169.78449 * 13 11 9 16 16 H 1.48502 * 109.47201 * 59.99714 * 15 13 11 17 17 H 1.48499 * 109.47467 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47238 * 299.99659 * 15 13 11 19 19 N 1.31858 * 106.95000 * 359.57854 * 6 5 4 20 20 N 1.28463 * 110.06695 * 0.26521 * 19 6 5 21 21 H 0.96997 * 124.88163 * 180.02562 * 20 19 6 22 22 H 1.08992 * 109.47019 * 300.00104 * 1 2 3 23 23 H 1.09003 * 109.46958 * 60.00470 * 1 2 3 24 24 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46948 * 239.99913 * 2 1 3 26 26 H 1.08998 * 109.47252 * 120.00183 * 2 1 3 27 27 H 1.08992 * 109.47292 * 60.00063 * 3 2 1 28 28 H 1.09006 * 109.47271 * 299.99893 * 3 2 1 29 29 H 1.08008 * 127.24879 * 359.97438 * 5 4 3 30 30 H 1.08994 * 109.47180 * 179.40197 * 10 9 7 31 31 H 1.09000 * 109.46870 * 299.40661 * 10 9 7 32 32 H 1.08999 * 109.46680 * 59.40678 * 10 9 7 33 33 H 0.97006 * 120.00202 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3503 1.3417 1.0840 6 6 5.6725 1.3917 0.5816 7 6 6.9164 1.3227 1.3733 8 8 6.8642 1.1212 2.5714 9 7 8.1101 1.4831 0.7684 10 6 8.1698 1.8372 -0.6519 11 6 9.2669 1.3094 1.4799 12 1 9.3253 1.6425 2.5055 13 6 10.3664 0.7042 0.8819 14 7 10.2394 0.1205 -0.2882 15 14 12.0244 0.7211 1.7421 16 1 11.9080 0.0367 3.0549 17 1 13.0251 0.0152 0.9023 18 1 12.4585 2.1255 1.9530 19 7 5.5817 1.5060 -0.7289 20 7 4.3476 1.5370 -1.0842 21 1 4.0356 1.6164 -1.9992 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9564 -0.8900 29 1 4.0463 1.2461 2.1160 30 1 9.2112 1.9332 -0.9590 31 1 7.6875 1.0574 -1.2414 32 1 7.6550 2.7845 -0.8121 33 1 11.0065 -0.3021 -0.7053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608777522.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:29 Heat of formation + Delta-G solvation = 36.080828 kcal Electronic energy + Delta-G solvation = -16554.686089 eV Core-core repulsion = 13810.226459 eV Total energy + Delta-G solvation = -2744.459630 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.09706 -37.94988 -35.33476 -34.51695 -31.79286 -30.99849 -30.57149 -26.56793 -25.93178 -24.86668 -22.41866 -21.93023 -20.56114 -18.59037 -17.24002 -16.71090 -15.69042 -15.23775 -15.11395 -14.67911 -13.97912 -13.69568 -13.54528 -13.26231 -12.99512 -12.45335 -12.23654 -11.68727 -11.48585 -11.42360 -11.33256 -11.18439 -10.89537 -10.76935 -10.38521 -10.33188 -9.90524 -8.84976 -8.69560 -8.53119 -8.49415 -7.35947 -6.25972 -3.91001 2.30552 2.72550 3.27983 3.29637 3.32402 3.36020 4.19532 4.57066 4.62357 4.79025 4.91912 4.99734 5.19520 5.23930 5.37592 5.41318 5.57841 5.63647 5.86542 5.89297 6.10980 6.15734 6.22926 6.40297 6.77796 6.94561 7.02254 7.35472 7.50454 7.62094 8.33092 8.44475 8.66634 9.25051 9.47067 10.10483 10.79687 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.056090 B = 0.005246 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.079542 B = 5336.611218 C = 5548.840244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.045 4.045 4 C 0.000 4.000 5 C -0.186 4.186 6 C 0.023 3.977 7 C 0.526 3.474 8 O -0.580 6.580 9 N -0.426 5.426 10 C 0.111 3.889 11 C -0.309 4.309 12 H 0.093 0.907 13 C 0.036 3.964 14 N -0.873 5.873 15 Si 0.927 3.073 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.273 1.273 19 N -0.262 5.262 20 N -0.398 5.398 21 H 0.435 0.565 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.154 0.846 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.023 0.977 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.806 2.142 -4.745 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.084 4.084 4 C -0.126 4.126 5 C -0.214 4.214 6 C -0.139 4.139 7 C 0.313 3.687 8 O -0.463 6.463 9 N -0.144 5.144 10 C -0.033 4.033 11 C -0.438 4.438 12 H 0.111 0.889 13 C -0.169 4.169 14 N -0.511 5.511 15 Si 0.753 3.247 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.198 1.198 19 N -0.097 5.097 20 N -0.110 5.110 21 H 0.278 0.722 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.171 0.829 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.984 2.030 -5.227 15.067 hybrid contribution 0.168 -0.153 0.311 0.385 sum -13.817 1.877 -4.916 14.785 Atomic orbital electron populations 1.21779 0.95577 1.01774 1.01777 1.21552 0.95560 0.95957 1.02950 1.20117 0.87095 0.97789 1.03373 1.21270 0.94414 1.08973 0.87948 1.21464 0.91114 1.09589 0.99241 1.22595 0.96057 1.05841 0.89407 1.17061 0.81769 0.83084 0.86791 1.90599 1.86276 1.55230 1.14222 1.43314 1.03985 1.57449 1.09661 1.21550 1.02360 0.96947 0.82424 1.19503 0.88304 1.37677 0.98321 0.88908 1.25503 1.00414 0.94542 0.96398 1.69937 1.31346 1.33489 1.16297 0.86001 0.80841 0.78553 0.79274 1.19626 1.20955 1.19800 1.73997 0.99771 1.20195 1.15710 1.43419 1.03583 1.54926 1.09120 0.72197 0.92507 0.92855 0.92627 0.92058 0.91110 0.89496 0.91151 0.82854 0.90072 0.92731 0.95849 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 3 C -0.04 -0.44 5.77 -27.88 -0.16 -0.60 16 4 C 0.00 -0.01 6.48 -82.20 -0.53 -0.54 16 5 C -0.19 -3.47 10.73 -39.35 -0.42 -3.89 16 6 C 0.02 0.52 6.87 -82.77 -0.57 -0.05 16 7 C 0.53 14.50 7.62 -12.44 -0.09 14.41 16 8 O -0.58 -17.44 16.78 5.27 0.09 -17.35 16 9 N -0.43 -11.97 2.94 -123.36 -0.36 -12.33 16 10 C 0.11 2.76 7.92 59.85 0.47 3.24 16 11 C -0.31 -9.07 8.98 -14.99 -0.13 -9.21 16 12 H 0.09 2.78 7.66 -52.49 -0.40 2.37 16 13 C 0.04 0.99 5.00 -17.45 -0.09 0.91 16 14 N -0.87 -24.51 11.35 55.50 0.63 -23.88 16 15 Si 0.93 21.26 29.57 -169.99 -5.03 16.23 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 19 N -0.26 -5.24 8.95 33.41 0.30 -4.94 16 20 N -0.40 -5.93 6.83 33.50 0.23 -5.70 16 21 H 0.44 4.60 8.96 -190.45 -1.71 2.90 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.15 2.73 8.06 -52.48 -0.42 2.31 16 30 H 0.08 2.10 6.20 -51.93 -0.32 1.78 16 31 H 0.05 1.35 6.89 -51.93 -0.36 1.00 16 32 H 0.02 0.53 7.71 -51.93 -0.40 0.13 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 283.71 15.07 4.28 4.28 Total: -1.00 -34.03 283.71 -6.89 -40.92 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.71 Total: 0.55 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.32 Total: 2.23 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.80 Total: -46.86 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.09 Total: -17.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.03 -6.89 -40.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608777522.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.998 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds