Wall clock time and date at job start Sun Mar 29 2020 22:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 C 1.50702 * 109.47259 * 180.02562 * 3 2 1 5 5 C 1.35349 * 126.38068 * 275.30255 * 4 3 2 6 6 C 1.41538 * 105.50448 * 180.14013 * 5 4 3 7 7 C 1.47612 * 126.52508 * 179.84309 * 6 5 4 8 8 O 1.21603 * 120.00149 * 4.95215 * 7 6 5 9 9 N 1.34776 * 120.00122 * 184.95629 * 7 6 5 10 10 C 1.46502 * 120.00077 * 5.13662 * 9 7 6 11 11 C 1.36914 * 119.99794 * 185.41657 * 9 7 6 12 12 H 1.07999 * 120.00307 * 322.08920 * 11 9 7 13 13 C 1.39022 * 119.99529 * 142.09202 * 11 9 7 14 14 N 1.31379 * 120.00277 * 349.78248 * 13 11 9 15 15 Si 1.86798 * 119.99710 * 169.78449 * 13 11 9 16 16 H 1.48502 * 109.47201 * 59.99714 * 15 13 11 17 17 H 1.48499 * 109.47467 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47238 * 299.99659 * 15 13 11 19 19 N 1.31858 * 106.95000 * 359.57854 * 6 5 4 20 20 N 1.28463 * 110.06695 * 0.26521 * 19 6 5 21 21 H 0.96997 * 124.88163 * 180.02562 * 20 19 6 22 22 H 1.08992 * 109.47019 * 300.00104 * 1 2 3 23 23 H 1.09003 * 109.46958 * 60.00470 * 1 2 3 24 24 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46948 * 239.99913 * 2 1 3 26 26 H 1.08998 * 109.47252 * 120.00183 * 2 1 3 27 27 H 1.08992 * 109.47292 * 60.00063 * 3 2 1 28 28 H 1.09006 * 109.47271 * 299.99893 * 3 2 1 29 29 H 1.08008 * 127.24879 * 359.97438 * 5 4 3 30 30 H 1.08994 * 109.47180 * 179.40197 * 10 9 7 31 31 H 1.09000 * 109.46870 * 299.40661 * 10 9 7 32 32 H 1.08999 * 109.46680 * 59.40678 * 10 9 7 33 33 H 0.97006 * 120.00202 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3503 1.3417 1.0840 6 6 5.6725 1.3917 0.5816 7 6 6.9164 1.3227 1.3733 8 8 6.8642 1.1212 2.5714 9 7 8.1101 1.4831 0.7684 10 6 8.1698 1.8372 -0.6519 11 6 9.2669 1.3094 1.4799 12 1 9.3253 1.6425 2.5055 13 6 10.3664 0.7042 0.8819 14 7 10.2394 0.1205 -0.2882 15 14 12.0244 0.7211 1.7421 16 1 11.9080 0.0367 3.0549 17 1 13.0251 0.0152 0.9023 18 1 12.4585 2.1255 1.9530 19 7 5.5817 1.5060 -0.7289 20 7 4.3476 1.5370 -1.0842 21 1 4.0356 1.6164 -1.9992 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9564 -0.8900 29 1 4.0463 1.2461 2.1160 30 1 9.2112 1.9332 -0.9590 31 1 7.6875 1.0574 -1.2414 32 1 7.6550 2.7845 -0.8121 33 1 11.0065 -0.3021 -0.7053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608777522.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:28 Heat of formation + Delta-G solvation = 12.511921 kcal Electronic energy + Delta-G solvation = -16555.708113 eV Core-core repulsion = 13810.226459 eV Total energy + Delta-G solvation = -2745.481654 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.54867 -40.03477 -36.67862 -36.16902 -33.81831 -32.59553 -31.75886 -28.30349 -27.23836 -26.88937 -24.26174 -22.78987 -21.80873 -20.42396 -18.86893 -18.59400 -17.53711 -16.80885 -16.56874 -15.96493 -15.85395 -15.46081 -14.74478 -14.61501 -14.38134 -13.88377 -13.70754 -13.34533 -13.21182 -12.96942 -12.68195 -12.50691 -12.38999 -12.12363 -12.08678 -11.64231 -11.42919 -10.92309 -10.69335 -10.24614 -9.84765 -9.50620 -8.37643 -6.13488 0.75051 1.21427 1.41397 1.47896 1.53795 2.09457 2.30296 2.56741 3.02301 3.11379 3.64551 3.76492 4.05620 4.21133 4.36092 4.56119 4.62011 4.79986 4.81582 4.86920 4.96459 5.01571 5.02904 5.26893 5.31061 5.37226 5.41451 5.46818 5.50786 6.14178 6.27682 6.50621 6.98954 7.13481 7.35959 7.98042 8.67816 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.056090 B = 0.005246 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.079542 B = 5336.611218 C = 5548.840244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.041 4.041 4 C 0.039 3.961 5 C -0.211 4.211 6 C -0.018 4.018 7 C 0.513 3.487 8 O -0.623 6.623 9 N -0.443 5.443 10 C 0.129 3.871 11 C -0.353 4.353 12 H 0.072 0.928 13 C 0.001 3.999 14 N -0.894 5.894 15 Si 0.998 3.002 16 H -0.274 1.274 17 H -0.268 1.268 18 H -0.261 1.261 19 N -0.274 5.274 20 N -0.371 5.371 21 H 0.458 0.542 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.153 0.847 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.335 2.451 -6.230 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.080 4.080 4 C -0.088 4.088 5 C -0.240 4.240 6 C -0.178 4.178 7 C 0.302 3.698 8 O -0.509 6.509 9 N -0.161 5.161 10 C -0.014 4.014 11 C -0.481 4.481 12 H 0.090 0.910 13 C -0.201 4.201 14 N -0.531 5.531 15 Si 0.819 3.181 16 H -0.199 1.199 17 H -0.192 1.192 18 H -0.186 1.186 19 N -0.111 5.111 20 N -0.087 5.087 21 H 0.306 0.694 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.171 0.829 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.522 2.348 -6.768 17.096 hybrid contribution 0.485 -0.264 0.688 0.882 sum -15.037 2.084 -6.080 16.353 Atomic orbital electron populations 1.21742 0.93675 1.02265 1.02788 1.21530 0.97158 0.95220 1.02071 1.20359 0.83027 0.98740 1.05848 1.21799 0.96333 1.04667 0.85998 1.21602 0.90184 1.11480 1.00717 1.22021 0.95373 1.09865 0.90531 1.17729 0.83219 0.81993 0.86860 1.90529 1.87316 1.56931 1.16119 1.43573 1.04090 1.57801 1.10601 1.21408 1.01527 0.97600 0.80903 1.19591 0.90062 1.40204 0.98281 0.91007 1.26371 1.03614 0.93162 0.97000 1.70009 1.32745 1.33139 1.17175 0.84958 0.75987 0.79172 0.77938 1.19944 1.19197 1.18565 1.73832 1.02284 1.20508 1.14431 1.43485 1.02296 1.52341 1.10624 0.69397 0.91980 0.91361 0.92502 0.92195 0.92928 0.88093 0.87626 0.82922 0.91437 0.92967 0.94057 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.89 5.92 30.59 0.18 -1.71 16 3 C -0.04 -0.63 5.77 29.85 0.17 -0.46 16 4 C 0.04 1.03 6.48 41.40 0.27 1.30 16 5 C -0.21 -7.87 10.73 22.42 0.24 -7.63 16 6 C -0.02 -0.85 6.87 42.43 0.29 -0.56 16 7 C 0.51 29.61 7.62 86.72 0.66 30.27 16 8 O -0.62 -39.59 16.78 -4.04 -0.07 -39.66 16 9 N -0.44 -25.88 2.94 -662.45 -1.95 -27.82 16 10 C 0.13 6.55 7.92 127.77 1.01 7.56 16 11 C -0.35 -21.56 8.98 84.09 0.75 -20.81 16 12 H 0.07 4.55 7.66 -2.91 -0.02 4.53 16 13 C 0.00 0.07 5.00 84.95 0.42 0.50 16 14 N -0.89 -50.60 11.35 21.68 0.25 -50.35 16 15 Si 1.00 43.89 29.57 68.60 2.03 45.92 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 19 N -0.27 -10.76 8.95 -48.20 -0.43 -11.19 16 20 N -0.37 -10.11 6.83 -47.93 -0.33 -10.44 16 21 H 0.46 7.95 8.96 -220.00 -1.97 5.97 16 22 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.15 5.55 8.06 -2.91 -0.02 5.53 16 30 H 0.07 3.56 6.20 -2.39 -0.01 3.54 16 31 H 0.05 2.63 6.89 -2.39 -0.02 2.61 16 32 H 0.04 1.89 7.71 -2.39 -0.02 1.88 16 33 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -77.49 283.71 3.37 -74.12 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -0.85 Total: 11.88 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 4.72 Total: 7.54 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -2.46 Total: -99.81 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.07 Total: -39.66 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -77.49 3.37 -74.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608777522.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.634 kcal (2) G-P(sol) polarization free energy of solvation -77.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds