Wall clock time and date at job start Sun Mar 29 2020 21:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 H 1.08996 * 109.47135 * 300.00342 * 15 13 12 17 17 C 1.53005 * 109.46725 * 60.00029 * 15 13 12 18 18 C 1.50697 * 109.47437 * 179.97438 * 15 13 12 19 19 C 1.34511 * 125.78975 * 119.99749 * 18 15 13 20 20 C 1.41377 * 106.84287 * 180.02562 * 19 18 15 21 21 C 1.34514 * 106.83976 * 0.02562 * 20 19 18 22 22 O 1.34306 * 108.42396 * 359.73453 * 21 20 19 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 28 28 H 1.08997 * 109.46918 * 300.00281 * 17 15 13 29 29 H 1.08996 * 109.47059 * 60.00266 * 17 15 13 30 30 H 1.09004 * 109.46991 * 180.02562 * 17 15 13 31 31 H 1.07999 * 126.57898 * 359.97438 * 19 18 15 32 32 H 1.07999 * 126.58528 * 180.02562 * 20 19 18 33 33 H 1.08003 * 125.78636 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 1 1.9762 -1.5508 3.8325 17 6 4.0515 -1.2798 3.3221 18 6 2.7004 0.2395 4.7411 19 6 2.0256 0.1207 5.8987 20 6 2.3659 1.2430 6.6883 21 6 3.2278 1.9808 5.9657 22 8 3.4310 1.3654 4.7894 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7093 1.1619 -3.4844 27 1 2.2491 -1.6318 1.1525 28 1 4.0147 -1.9801 2.4876 29 1 4.7243 -0.4580 3.0773 30 1 4.4144 -1.7941 4.2120 31 1 1.3524 -0.6783 6.1721 32 1 2.0035 1.4653 7.6810 33 1 3.6832 2.9083 6.2803 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610196994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:46 Heat of formation + Delta-G solvation = -32.708588 kcal Electronic energy + Delta-G solvation = -16714.383809 eV Core-core repulsion = 13934.648495 eV Total energy + Delta-G solvation = -2779.735314 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.36556 -38.95529 -34.85086 -33.92583 -32.67677 -32.22277 -29.04251 -28.11930 -25.26357 -24.38324 -21.68044 -21.50699 -20.11637 -19.25312 -17.57508 -16.75443 -15.90949 -15.42250 -15.30601 -14.57838 -14.56244 -13.73147 -13.35479 -12.99249 -12.62445 -12.53644 -12.41835 -12.06188 -11.79644 -11.48580 -11.35816 -11.07997 -10.93717 -10.71016 -10.32004 -10.22726 -9.72257 -9.05701 -9.01597 -8.54478 -8.25211 -7.90702 -6.11492 -4.21139 1.95163 2.77829 3.19505 3.25862 3.31127 3.31998 3.38624 4.08900 4.38194 4.67988 5.09739 5.11710 5.20436 5.23436 5.29250 5.48908 5.73010 5.82276 5.97271 6.03956 6.17017 6.31661 6.66285 6.83445 6.97287 7.15851 7.37421 7.46269 7.56192 7.69546 7.92032 8.15543 8.65506 8.78133 9.11926 9.46354 10.94471 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.048700 B = 0.005434 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.815934 B = 5151.613952 C = 5349.619564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.706 5.706 13 C 0.504 3.496 14 O -0.542 6.542 15 C -0.037 4.037 16 H 0.119 0.881 17 C -0.142 4.142 18 C 0.029 3.971 19 C -0.219 4.219 20 C -0.218 4.218 21 C -0.044 4.044 22 O -0.158 6.158 23 H 0.014 0.986 24 H 0.026 0.974 25 H 0.090 0.910 26 H 0.265 0.735 27 H 0.389 0.611 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.985 -4.204 13.922 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.355 5.355 13 C 0.287 3.713 14 O -0.420 6.420 15 C -0.059 4.059 16 H 0.137 0.863 17 C -0.200 4.200 18 C -0.022 4.022 19 C -0.238 4.238 20 C -0.237 4.237 21 C -0.112 4.112 22 O -0.052 6.052 23 H 0.033 0.967 24 H 0.046 0.954 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.221 0.779 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.868 -3.116 13.529 14.412 hybrid contribution 0.158 -0.864 -0.606 1.068 sum 4.027 -3.980 12.923 14.108 Atomic orbital electron populations 1.22079 0.98479 0.99106 1.00908 1.18747 0.91013 0.94014 0.79928 0.93394 1.21173 1.32521 1.13238 0.90307 0.92101 1.24889 0.94805 0.94950 0.99056 1.69893 1.35808 1.22406 1.23992 0.86501 0.79158 0.79568 0.81813 1.20155 1.21138 1.20178 1.46483 1.65123 1.13515 1.10337 1.20153 0.79047 0.87592 0.84476 1.90692 1.50610 1.15854 1.84865 1.20023 1.00284 0.95272 0.90292 0.86334 1.21779 0.93988 1.01730 1.02503 1.21689 0.96121 0.87927 0.96475 1.21476 1.05484 1.01973 0.94851 1.21711 1.03087 0.97003 1.01871 1.23968 1.02925 0.99831 0.84514 1.84057 1.54997 1.30917 1.35271 0.96682 0.95443 0.89148 0.92512 0.77890 0.90833 0.91507 0.91532 0.83749 0.83801 0.78488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.80 2.56 -69.08 -0.18 6.62 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.04 11.32 55.43 0.63 -24.42 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.71 -14.68 4.96 -54.93 -0.27 -14.95 16 13 C 0.50 10.29 7.11 -10.99 -0.08 10.21 16 14 O -0.54 -13.62 15.47 -0.92 -0.01 -13.64 16 15 C -0.04 -0.56 3.13 -92.92 -0.29 -0.85 16 16 H 0.12 1.43 8.10 -51.93 -0.42 1.01 16 17 C -0.14 -1.79 9.07 37.16 0.34 -1.45 16 18 C 0.03 0.47 5.19 -35.63 -0.19 0.29 16 19 C -0.22 -3.10 10.78 -39.71 -0.43 -3.53 16 20 C -0.22 -2.83 10.91 -39.70 -0.43 -3.26 16 21 C -0.04 -0.60 12.09 29.42 0.36 -0.24 16 22 O -0.16 -2.72 10.36 -0.79 -0.01 -2.72 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.39 6.81 7.96 -40.82 -0.32 6.48 16 28 H 0.07 0.83 7.56 -51.93 -0.39 0.44 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.20 1.86 8.06 -52.48 -0.42 1.43 16 LS Contribution 287.17 15.07 4.33 4.33 Total: -1.00 -32.55 287.17 -5.66 -38.20 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.35 Total: 5.95 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -0.95 Total: -8.32 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.35 Total: -39.37 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.02 Total: -16.36 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.55 -5.66 -38.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610196994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.496 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds