Wall clock time and date at job start Sun Mar 29 2020 21:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47120 * 2 1 4 4 C 1.46502 * 119.99846 * 271.20838 * 3 2 1 5 5 C 1.50700 * 109.47280 * 265.22890 * 4 3 2 6 6 H 1.08000 * 119.99742 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00405 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99896 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00068 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47041 * 60.00231 * 9 7 5 11 11 H 1.48503 * 109.47100 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47323 * 299.99883 * 9 7 5 13 13 C 1.34770 * 120.00254 * 91.20935 * 3 2 1 14 14 O 1.21695 * 120.00021 * 354.63140 * 13 3 2 15 15 C 1.46663 * 120.00289 * 174.90838 * 13 3 2 16 16 C 1.36540 * 125.98440 * 173.80543 * 15 13 3 17 17 C 1.40368 * 106.70135 * 179.85348 * 16 15 13 18 18 C 1.50703 * 126.44068 * 180.15721 * 17 16 15 19 19 C 1.35127 * 107.11896 * 0.40906 * 17 16 15 20 20 O 1.33937 * 108.76613 * 359.74724 * 19 17 16 21 21 H 1.09001 * 109.46970 * 60.00017 * 1 2 3 22 22 H 1.08996 * 109.47082 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47018 * 300.00173 * 1 2 3 24 24 H 1.08997 * 109.47018 * 239.99827 * 2 1 3 25 25 H 1.09001 * 109.46970 * 119.99983 * 2 1 3 26 26 H 1.09002 * 109.47695 * 25.22886 * 4 3 2 27 27 H 1.09002 * 109.47023 * 145.22866 * 4 3 2 28 28 H 0.97002 * 120.00285 * 179.97438 * 8 7 5 29 29 H 1.07995 * 126.65177 * 359.97438 * 16 15 13 30 30 H 1.09005 * 109.46943 * 270.27725 * 18 17 16 31 31 H 1.08999 * 109.47522 * 30.27517 * 18 17 16 32 32 H 1.08995 * 109.47079 * 150.27965 * 18 17 16 33 33 H 1.08001 * 125.61890 * 179.71312 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2373 2.0807 -1.2685 5 6 3.6823 1.9448 -1.6742 6 1 4.3690 1.3929 -1.0495 7 6 4.1279 2.5258 -2.8425 8 7 3.2921 3.1991 -3.6025 9 14 5.9193 2.3579 -3.3450 10 1 6.2548 0.9206 -3.5085 11 1 6.1415 3.0679 -4.6302 12 1 6.7856 2.9523 -2.2955 13 6 2.2662 2.0083 1.1668 14 8 1.9928 1.4640 2.2203 15 6 2.8600 3.3494 1.1670 16 6 3.0523 4.1415 2.2624 17 6 3.6473 5.3271 1.8034 18 6 4.0539 6.5089 2.6455 19 6 3.7820 5.2119 0.4638 20 8 3.3064 4.0188 0.0840 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6012 1.6444 -2.0386 27 1 1.9913 3.1358 -1.1487 28 1 3.6057 3.6082 -4.4242 29 1 2.7979 3.9016 3.2841 30 1 3.2198 7.2068 2.7190 31 1 4.3301 6.1666 3.6428 32 1 4.9057 7.0082 2.1838 33 1 4.2032 5.9590 -0.1926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718485625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:47 Heat of formation + Delta-G solvation = -25.409296 kcal Electronic energy + Delta-G solvation = -17229.184997 eV Core-core repulsion = 14449.766204 eV Total energy + Delta-G solvation = -2779.418793 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.99055 -38.81654 -35.35539 -33.58142 -32.74136 -30.85441 -29.54853 -27.04199 -26.77247 -23.73368 -23.05956 -21.16845 -20.33834 -18.41589 -16.79407 -16.42198 -15.88499 -15.44807 -15.35797 -14.43659 -14.00505 -13.58651 -13.12589 -12.89705 -12.85624 -12.46836 -12.40908 -12.22687 -11.91056 -11.62468 -11.40782 -11.15067 -10.95661 -10.69727 -10.48627 -10.11683 -9.77178 -9.45013 -9.11492 -8.50335 -8.06373 -7.69776 -6.12318 -4.16792 1.80723 2.84445 3.25927 3.30284 3.33745 3.48711 3.91959 4.00773 4.37908 5.17470 5.22089 5.24531 5.41525 5.55987 5.75388 5.78249 5.81028 5.86889 6.02792 6.14768 6.22750 6.37045 6.39632 6.52689 6.63186 6.74469 6.93581 7.27449 7.46390 7.69426 7.80926 8.10350 8.23206 8.78692 8.91499 9.47906 10.95219 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.012433 C = 0.007656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.276264 B = 2251.589287 C = 3656.387340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.585 5.585 4 C 0.235 3.765 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.595 3.405 14 O -0.559 6.559 15 C -0.052 4.052 16 C -0.147 4.147 17 C -0.214 4.214 18 C -0.075 4.075 19 C -0.015 4.015 20 O -0.097 6.097 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.264 0.736 29 H 0.149 0.851 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 2.785 6.302 6.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.314 5.314 4 C 0.116 3.884 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.383 3.617 14 O -0.442 6.442 15 C -0.106 4.106 16 C -0.167 4.167 17 C -0.215 4.215 18 C -0.132 4.132 19 C -0.088 4.088 20 O 0.012 5.988 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.166 0.834 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.171 2.448 6.298 6.857 hybrid contribution 1.135 0.154 -0.420 1.220 sum -0.035 2.601 5.877 6.427 Atomic orbital electron populations 1.22117 0.96576 1.01386 1.02160 1.21316 0.93714 0.83044 1.02687 1.48247 1.61770 1.13648 1.07774 1.19611 0.97232 0.92819 0.78773 1.21316 0.94307 1.33905 1.06581 0.92484 1.24835 0.97568 0.94875 0.96125 1.69914 1.34712 1.34566 1.13865 0.86653 0.85208 0.78405 0.77769 1.20214 1.21183 1.20180 1.16703 0.78108 0.82755 0.84088 1.90750 1.55677 1.66120 1.31620 1.22020 1.07301 0.95612 0.85682 1.21602 1.02713 0.93307 0.99125 1.20315 1.08454 0.98407 0.94369 1.20073 1.00588 0.94223 0.98354 1.24239 1.01092 0.88278 0.95142 1.84816 1.57462 1.23968 1.32588 0.92461 0.92233 0.92647 0.90185 0.90899 0.94341 0.93531 0.92659 0.83362 0.91992 0.91944 0.92010 0.78648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.12 2.16 6.08 -4.04 -0.02 2.13 16 3 N -0.59 -12.98 2.47 -176.61 -0.44 -13.42 16 4 C 0.23 5.77 4.75 -5.19 -0.02 5.74 16 5 C -0.52 -13.81 7.83 -34.44 -0.27 -14.08 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 9 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.60 13.53 7.59 -12.86 -0.10 13.43 16 14 O -0.56 -13.14 16.49 5.19 0.09 -13.05 16 15 C -0.05 -1.14 6.65 -36.80 -0.24 -1.38 16 16 C -0.15 -2.75 10.58 -39.39 -0.42 -3.17 16 17 C -0.21 -3.56 6.14 -104.93 -0.64 -4.20 16 18 C -0.08 -0.92 10.39 36.01 0.37 -0.55 16 19 C -0.02 -0.28 12.00 29.63 0.36 0.08 16 20 O -0.10 -2.16 6.39 4.98 0.03 -2.13 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.08 1.44 8.08 -51.93 -0.42 1.03 16 25 H 0.07 1.34 7.46 -51.93 -0.39 0.96 16 26 H 0.04 0.97 8.04 -51.93 -0.42 0.56 16 27 H 0.05 1.22 5.90 -51.93 -0.31 0.91 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.15 2.55 8.06 -52.49 -0.42 2.13 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.20 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 287.77 15.07 4.34 4.34 Total: -1.00 -29.73 287.77 -5.43 -35.16 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.46 Total: -0.29 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -0.71 Total: -2.53 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.30 Total: -37.25 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.12 Total: -15.18 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.73 -5.43 -35.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718485625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.754 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds