Wall clock time and date at job start Sun Mar 29 2020 21:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47120 * 2 1 4 4 C 1.46502 * 119.99846 * 271.20838 * 3 2 1 5 5 C 1.50700 * 109.47280 * 265.22890 * 4 3 2 6 6 H 1.08000 * 119.99742 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00405 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99896 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00068 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47041 * 60.00231 * 9 7 5 11 11 H 1.48503 * 109.47100 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47323 * 299.99883 * 9 7 5 13 13 C 1.34770 * 120.00254 * 91.20935 * 3 2 1 14 14 O 1.21695 * 120.00021 * 354.63140 * 13 3 2 15 15 C 1.46663 * 120.00289 * 174.90838 * 13 3 2 16 16 C 1.36540 * 125.98440 * 173.80543 * 15 13 3 17 17 C 1.40368 * 106.70135 * 179.85348 * 16 15 13 18 18 C 1.50703 * 126.44068 * 180.15721 * 17 16 15 19 19 C 1.35127 * 107.11896 * 0.40906 * 17 16 15 20 20 O 1.33937 * 108.76613 * 359.74724 * 19 17 16 21 21 H 1.09001 * 109.46970 * 60.00017 * 1 2 3 22 22 H 1.08996 * 109.47082 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47018 * 300.00173 * 1 2 3 24 24 H 1.08997 * 109.47018 * 239.99827 * 2 1 3 25 25 H 1.09001 * 109.46970 * 119.99983 * 2 1 3 26 26 H 1.09002 * 109.47695 * 25.22886 * 4 3 2 27 27 H 1.09002 * 109.47023 * 145.22866 * 4 3 2 28 28 H 0.97002 * 120.00285 * 179.97438 * 8 7 5 29 29 H 1.07995 * 126.65177 * 359.97438 * 16 15 13 30 30 H 1.09005 * 109.46943 * 270.27725 * 18 17 16 31 31 H 1.08999 * 109.47522 * 30.27517 * 18 17 16 32 32 H 1.08995 * 109.47079 * 150.27965 * 18 17 16 33 33 H 1.08001 * 125.61890 * 179.71312 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2373 2.0807 -1.2685 5 6 3.6823 1.9448 -1.6742 6 1 4.3690 1.3929 -1.0495 7 6 4.1279 2.5258 -2.8425 8 7 3.2921 3.1991 -3.6025 9 14 5.9193 2.3579 -3.3450 10 1 6.2548 0.9206 -3.5085 11 1 6.1415 3.0679 -4.6302 12 1 6.7856 2.9523 -2.2955 13 6 2.2662 2.0083 1.1668 14 8 1.9928 1.4640 2.2203 15 6 2.8600 3.3494 1.1670 16 6 3.0523 4.1415 2.2624 17 6 3.6473 5.3271 1.8034 18 6 4.0539 6.5089 2.6455 19 6 3.7820 5.2119 0.4638 20 8 3.3064 4.0188 0.0840 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6012 1.6444 -2.0386 27 1 1.9913 3.1358 -1.1487 28 1 3.6057 3.6082 -4.4242 29 1 2.7979 3.9016 3.2841 30 1 3.2198 7.2068 2.7190 31 1 4.3301 6.1666 3.6428 32 1 4.9057 7.0082 2.1838 33 1 4.2032 5.9590 -0.1926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718485625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:47 Heat of formation + Delta-G solvation = -42.656508 kcal Electronic energy + Delta-G solvation = -17229.932892 eV Core-core repulsion = 14449.766204 eV Total energy + Delta-G solvation = -2780.166688 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.49744 -40.53661 -37.11426 -34.94378 -34.70786 -32.44410 -31.00694 -28.95511 -27.99281 -25.30164 -24.95631 -22.70273 -21.81546 -20.01027 -18.68458 -18.15417 -17.50496 -17.09211 -16.98179 -16.31269 -15.67389 -15.12438 -14.50860 -14.31150 -14.23111 -13.96619 -13.87255 -13.75960 -13.38803 -13.16500 -13.04121 -12.71479 -12.59255 -12.39843 -12.15872 -11.84397 -11.74330 -11.20838 -10.60032 -10.49603 -9.68621 -9.32421 -8.15894 -6.27275 0.21817 1.41122 1.41782 1.46426 1.49916 1.95176 2.23478 2.35935 2.50051 3.15418 3.66044 3.97625 4.09370 4.17962 4.35356 4.45318 4.51152 4.73920 4.76280 4.91952 4.93239 4.98553 5.03735 5.11969 5.14951 5.24941 5.32795 5.61221 5.69571 5.77136 6.07816 6.18091 6.42466 6.79641 7.11915 7.41020 8.90828 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.012433 C = 0.007656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.276264 B = 2251.589287 C = 3656.387340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.107 3.893 3 N -0.591 5.591 4 C 0.253 3.747 5 C -0.528 4.528 6 H 0.043 0.957 7 C 0.030 3.970 8 N -0.917 5.917 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.275 1.275 13 C 0.589 3.411 14 O -0.576 6.576 15 C -0.097 4.097 16 C -0.137 4.137 17 C -0.203 4.203 18 C -0.074 4.074 19 C -0.026 4.026 20 O -0.130 6.130 21 H 0.051 0.949 22 H 0.093 0.907 23 H 0.044 0.956 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.026 0.974 27 H 0.030 0.970 28 H 0.267 0.733 29 H 0.162 0.838 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 3.593 6.789 7.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 N -0.319 5.319 4 C 0.133 3.867 5 C -0.567 4.567 6 H 0.061 0.939 7 C -0.170 4.170 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.200 1.200 13 C 0.378 3.622 14 O -0.460 6.460 15 C -0.149 4.149 16 C -0.158 4.158 17 C -0.204 4.204 18 C -0.130 4.130 19 C -0.097 4.097 20 O -0.023 6.023 21 H 0.071 0.929 22 H 0.112 0.888 23 H 0.063 0.937 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.180 0.820 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.335 3.244 6.794 7.536 hybrid contribution 0.871 -0.046 -0.525 1.018 sum 0.536 3.198 6.269 7.058 Atomic orbital electron populations 1.22025 0.94362 1.03384 1.01329 1.21556 0.95576 0.81447 1.02891 1.48287 1.61980 1.14758 1.06924 1.19207 0.96119 0.92024 0.79339 1.21373 0.94877 1.33825 1.06593 0.93889 1.25470 1.01105 0.94458 0.96007 1.70000 1.36317 1.35129 1.14207 0.85753 0.80782 0.78404 0.77577 1.19951 1.20350 1.20003 1.16944 0.77946 0.83382 0.83917 1.90712 1.56679 1.66834 1.31800 1.22055 1.10053 0.96111 0.86721 1.21951 1.01292 0.93525 0.99013 1.20784 1.06644 0.98821 0.94192 1.20213 1.01943 0.92659 0.98199 1.24992 1.00589 0.87534 0.96605 1.84742 1.58547 1.25598 1.33438 0.92947 0.88811 0.93688 0.89819 0.90753 0.95610 0.95219 0.92429 0.82046 0.90307 0.90730 0.90065 0.75863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.82 10.24 71.98 0.74 -4.08 16 2 C 0.11 4.03 6.08 86.38 0.53 4.56 16 3 N -0.59 -26.81 2.47 -830.88 -2.05 -28.86 16 4 C 0.25 12.78 4.75 85.63 0.41 13.19 16 5 C -0.53 -28.32 7.83 25.60 0.20 -28.12 16 6 H 0.04 2.39 7.81 -2.91 -0.02 2.36 16 7 C 0.03 1.59 5.46 84.65 0.46 2.05 16 8 N -0.92 -50.65 13.29 21.45 0.28 -50.36 16 9 Si 0.95 42.28 29.54 68.60 2.03 44.31 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.59 27.34 7.59 86.44 0.66 28.00 16 14 O -0.58 -27.44 16.49 -4.33 -0.07 -27.51 16 15 C -0.10 -4.25 6.65 24.07 0.16 -4.09 16 16 C -0.14 -5.03 10.58 22.39 0.24 -4.79 16 17 C -0.20 -6.34 6.14 -20.06 -0.12 -6.46 16 18 C -0.07 -1.53 10.39 71.24 0.74 -0.79 16 19 C -0.03 -0.92 12.00 67.10 0.81 -0.11 16 20 O -0.13 -5.86 6.39 -5.08 -0.03 -5.89 16 21 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 22 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.08 3.04 8.08 -2.39 -0.02 3.02 16 25 H 0.07 2.75 7.46 -2.39 -0.02 2.73 16 26 H 0.03 1.35 8.04 -2.39 -0.02 1.33 16 27 H 0.03 1.61 5.90 -2.39 -0.01 1.60 16 28 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.16 5.36 8.06 -2.91 -0.02 5.34 16 30 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.23 6.13 8.06 -2.91 -0.02 6.11 16 Total: -1.00 -63.76 287.77 6.06 -57.71 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.09 Total: 11.28 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 4.81 Total: -0.66 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -1.77 Total: -79.23 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.10 Total: -33.40 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -63.76 6.06 -57.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718485625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.049 kcal (2) G-P(sol) polarization free energy of solvation -63.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds