Wall clock time and date at job start Sun Mar 29 2020 21:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99956 * 2 1 4 4 H 1.48504 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47071 * 299.99692 * 3 2 1 6 6 H 1.48496 * 109.47211 * 59.99780 * 3 2 1 7 7 C 1.37878 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99999 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46690 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99546 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00191 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99696 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99956 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47448 * 180.02562 * 14 13 11 16 16 N 1.46494 * 109.47444 * 180.02562 * 15 14 13 17 17 C 1.36345 * 125.63345 * 90.00307 * 16 15 14 18 18 C 1.34850 * 108.21864 * 179.97438 * 17 16 15 19 19 C 1.40894 * 107.41649 * 0.02562 * 18 17 16 20 20 C 1.34846 * 107.41755 * 359.97438 * 19 18 17 21 21 H 0.97001 * 119.99871 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46607 * 60.00268 * 9 7 2 23 23 H 1.08996 * 109.47303 * 299.99859 * 9 7 2 24 24 H 0.97000 * 120.00138 * 359.97438 * 10 9 7 25 25 H 0.96999 * 120.00100 * 0.02562 * 13 11 10 26 26 H 1.09009 * 109.46695 * 60.00554 * 14 13 11 27 27 H 1.08993 * 109.47458 * 300.00697 * 14 13 11 28 28 H 1.09006 * 109.46659 * 60.00007 * 15 14 13 29 29 H 1.09005 * 109.47449 * 300.01084 * 15 14 13 30 30 H 1.08006 * 125.89009 * 359.71336 * 17 16 15 31 31 H 1.08004 * 126.29266 * 180.02562 * 18 17 16 32 32 H 1.07995 * 126.28821 * 179.97438 * 19 18 17 33 33 H 1.08002 * 125.89342 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2031 -3.6127 0.0027 11 6 1.7538 -4.8834 0.0033 12 8 0.5584 -5.1055 0.0035 13 7 2.6296 -5.9078 0.0037 14 6 2.1413 -7.2890 0.0049 15 6 3.3312 -8.2507 0.0058 16 7 2.8429 -9.6319 0.0064 17 6 2.5785 -10.3814 -1.1014 18 6 2.1500 -11.5945 -0.6973 19 6 2.1493 -11.5936 0.7117 20 6 2.5779 -10.3803 1.1148 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5574 -0.8880 23 1 0.6247 -2.5563 0.8919 24 1 3.1567 -3.4354 0.0022 25 1 3.5833 -5.7305 0.0039 26 1 1.5354 -7.4609 -0.8848 27 1 1.5360 -7.4596 0.8952 28 1 3.9368 -8.0786 0.8957 29 1 3.9369 -8.0801 -0.8843 30 1 2.6888 -10.0578 -2.1259 31 1 1.8606 -12.4157 -1.3362 32 1 1.8589 -12.4140 1.3512 33 1 2.6919 -10.0571 2.1390 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787350851.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:04 Heat of formation + Delta-G solvation = 16.720657 kcal Electronic energy + Delta-G solvation = -15695.272243 eV Core-core repulsion = 12949.973093 eV Total energy + Delta-G solvation = -2745.299150 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.23929 -39.25590 -35.52267 -34.11723 -32.74495 -32.12869 -28.88595 -28.47237 -26.75406 -23.53342 -22.27881 -20.58656 -20.46453 -19.97080 -18.32601 -17.24375 -16.32933 -15.73621 -15.53966 -14.79258 -14.40254 -14.35355 -13.60166 -13.58025 -13.40602 -13.00001 -12.50509 -12.19457 -12.06655 -12.02965 -11.97326 -11.51025 -10.95239 -10.92547 -10.33132 -9.52729 -9.38129 -8.91603 -8.76033 -8.73474 -8.26959 -7.82352 -6.17670 -4.24506 2.13139 2.61591 2.96389 3.22413 3.28989 3.31999 3.47894 3.86349 4.30946 4.41946 4.56253 4.90203 4.94626 5.07686 5.11622 5.18522 5.39694 5.52516 5.65152 5.80112 6.17742 6.20468 6.66256 6.87880 7.02943 7.11039 7.24008 7.45691 7.50618 7.53767 7.84997 7.99913 8.72579 8.87987 9.26841 9.44107 10.92621 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.081630 B = 0.003445 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.927490 B = 8124.815316 C = 8262.042960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.727 5.727 11 C 0.694 3.306 12 O -0.598 6.598 13 N -0.757 5.757 14 C 0.128 3.872 15 C 0.096 3.904 16 N -0.445 5.445 17 C -0.014 4.014 18 C -0.204 4.204 19 C -0.204 4.204 20 C -0.014 4.014 21 H 0.265 0.735 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.387 0.613 25 H 0.392 0.608 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.160 0.840 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.589 -17.741 0.011 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.380 5.380 11 C 0.393 3.607 12 O -0.476 6.476 13 N -0.416 5.416 14 C 0.002 3.998 15 C -0.027 4.027 16 N -0.121 5.121 17 C -0.143 4.143 18 C -0.228 4.228 19 C -0.228 4.228 20 C -0.143 4.143 21 H 0.075 0.925 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.219 0.781 25 H 0.225 0.775 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.178 0.822 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.394 -17.415 0.011 19.333 hybrid contribution 1.249 1.094 0.001 1.661 sum 9.643 -16.321 0.012 18.957 Atomic orbital electron populations 1.69992 1.06099 1.27206 1.48934 1.24957 0.94925 0.99446 0.94749 0.86348 0.79766 0.82937 0.77759 1.19670 1.20791 1.20796 1.21254 0.93289 0.90389 1.53121 0.91882 1.19010 0.87778 0.81034 0.97689 1.45721 1.10855 1.04296 1.77080 1.16103 0.85102 0.81022 0.78458 1.90893 1.14205 1.84149 1.58377 1.44959 1.08948 1.04700 1.83024 1.21312 0.95209 0.79903 1.03365 1.21964 0.96656 0.79128 1.04930 1.43959 1.51106 1.10686 1.06356 1.21879 1.08192 0.92678 0.91570 1.20903 1.09067 0.97630 0.95235 1.20901 1.09080 0.97615 0.95241 1.21876 1.08167 0.92714 0.91556 0.92476 0.95676 0.95686 0.78108 0.77471 0.91263 0.91273 0.88669 0.88673 0.82215 0.84840 0.84841 0.82218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.10 5.43 -5.19 -0.03 7.07 16 10 N -0.73 -15.30 5.55 -66.41 -0.37 -15.67 16 11 C 0.69 14.11 8.57 -86.92 -0.74 13.36 16 12 O -0.60 -15.07 16.34 5.29 0.09 -14.98 16 13 N -0.76 -10.51 5.56 -65.23 -0.36 -10.87 16 14 C 0.13 1.59 6.00 -4.04 -0.02 1.56 16 15 C 0.10 0.81 6.20 -4.05 -0.03 0.79 16 16 N -0.44 -4.53 2.75 -117.13 -0.32 -4.85 16 17 C -0.01 -0.14 11.43 -16.75 -0.19 -0.33 16 18 C -0.20 -2.17 10.86 -39.78 -0.43 -2.60 16 19 C -0.20 -2.17 10.86 -39.78 -0.43 -2.60 16 20 C -0.01 -0.14 11.43 -16.75 -0.19 -0.33 16 21 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.39 6.81 8.34 -40.82 -0.34 6.47 16 25 H 0.39 3.98 8.49 -40.82 -0.35 3.64 16 26 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 293.67 15.07 4.43 4.43 Total: -1.00 -34.17 293.67 -7.76 -41.93 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.45 Total: 6.09 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -2.49 Total: 3.58 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.32 Total: -56.75 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.09 Total: -14.98 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.17 -7.76 -41.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350851.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.652 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds