Wall clock time and date at job start Sun Mar 29 2020 21:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48506 * 109.46978 * 269.99933 * 3 2 1 5 5 H 1.48507 * 109.47216 * 29.99678 * 3 2 1 6 6 H 1.48497 * 109.47551 * 149.99682 * 3 2 1 7 7 C 1.37877 * 120.00498 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99601 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46992 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46938 * 179.97438 * 10 9 7 12 12 C 1.35315 * 125.86406 * 125.00406 * 11 10 9 13 13 C 1.35357 * 106.17188 * 179.97438 * 12 11 10 14 14 C 1.50697 * 126.74925 * 180.02562 * 13 12 11 15 15 O 1.42902 * 112.85465 * 50.32811 * 14 13 12 16 16 C 1.53789 * 113.61223 * 279.13402 * 14 13 12 17 17 C 1.53958 * 87.01729 * 220.05070 * 16 14 13 18 18 C 1.53781 * 113.61433 * 181.52569 * 14 13 12 19 19 N 1.33771 * 106.49776 * 359.97438 * 13 12 11 20 20 N 1.28636 * 108.88559 * 0.02562 * 19 13 12 21 21 H 0.96995 * 120.00256 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47346 * 59.99848 * 9 7 2 23 23 H 1.09002 * 109.47081 * 299.99737 * 9 7 2 24 24 H 1.08999 * 109.47183 * 59.99767 * 10 9 7 25 25 H 1.09002 * 109.47009 * 299.99800 * 10 9 7 26 26 H 1.07996 * 126.91369 * 359.70497 * 12 11 10 27 27 H 0.96708 * 113.99551 * 309.66338 * 15 14 13 28 28 H 1.09001 * 113.61139 * 334.56491 * 16 14 13 29 29 H 1.08998 * 113.61464 * 105.47332 * 16 14 13 30 30 H 1.09010 * 113.53463 * 270.80932 * 17 16 14 31 31 H 1.08995 * 113.74643 * 139.94310 * 17 16 14 32 32 H 1.08998 * 113.61508 * 254.52666 * 18 14 13 33 33 H 1.09004 * 113.61029 * 25.43319 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9307 0.0012 12 6 1.6610 -5.9321 -0.8968 13 6 0.7978 -6.9051 -0.5223 14 6 0.5841 -8.2320 -1.2038 15 8 1.8048 -8.9338 -1.4475 16 6 -0.3364 -8.1520 -2.4332 17 6 -0.9481 -9.4838 -1.9617 18 6 -0.5019 -9.0966 -0.5419 19 7 0.1726 -6.4575 0.5723 20 7 0.6186 -5.2849 0.8564 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 2.8721 -3.6042 0.8905 25 1 2.8721 -3.6042 -0.8895 26 1 2.3299 -5.9494 -1.7446 27 1 2.4837 -8.4018 -1.8849 28 1 -1.0346 -7.3156 -2.4021 29 1 0.1949 -8.2262 -3.3820 30 1 -0.4363 -10.3617 -2.3561 31 1 -2.0304 -9.5360 -2.0802 32 1 -0.1040 -9.9322 0.0339 33 1 -1.2454 -8.5188 0.0072 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849140944.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:21 Heat of formation + Delta-G solvation = 36.809506 kcal Electronic energy + Delta-G solvation = -16390.734122 eV Core-core repulsion = 13646.306090 eV Total energy + Delta-G solvation = -2744.428032 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.25525 -40.30355 -36.68596 -35.62705 -34.76264 -32.13466 -31.72842 -27.49464 -26.64544 -26.30129 -24.25133 -22.79302 -22.02307 -20.53803 -19.06577 -18.29149 -17.39690 -17.06836 -16.47091 -16.42011 -15.98923 -15.48951 -15.16283 -14.64478 -14.38382 -13.71562 -13.47341 -13.32960 -12.99890 -12.74862 -12.66758 -12.33982 -12.16959 -12.01859 -11.80382 -11.74395 -11.46406 -11.23900 -11.06409 -10.85419 -10.64044 -10.12010 -8.27466 -6.42042 0.69197 1.41273 1.43597 1.45335 1.53488 1.57524 2.38890 3.08241 3.13365 3.19459 3.53297 3.75538 3.86991 3.92151 3.96340 4.23751 4.26930 4.50213 4.54853 4.79031 4.85513 4.88258 5.04831 5.08731 5.10284 5.25010 5.28634 5.43504 5.51067 5.56924 5.76110 6.03373 6.74615 6.78062 7.29661 7.54810 8.85187 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.055423 B = 0.004536 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.087958 B = 6170.928101 C = 6263.778034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.023 3.977 10 C 0.124 3.876 11 N -0.277 5.277 12 C -0.036 4.036 13 C -0.060 4.060 14 C 0.194 3.806 15 O -0.538 6.538 16 C -0.147 4.147 17 C -0.124 4.124 18 C -0.126 4.126 19 N -0.295 5.295 20 N -0.127 5.127 21 H 0.265 0.735 22 H -0.007 1.007 23 H -0.005 1.005 24 H 0.100 0.900 25 H 0.134 0.866 26 H 0.235 0.765 27 H 0.396 0.604 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.163 -15.143 -7.406 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.582 4.582 8 H 0.100 0.900 9 C -0.015 4.015 10 C 0.005 3.995 11 N -0.069 5.069 12 C -0.188 4.188 13 C -0.201 4.201 14 C 0.150 3.850 15 O -0.345 6.345 16 C -0.186 4.186 17 C -0.161 4.161 18 C -0.163 4.163 19 N -0.161 5.161 20 N -0.106 5.106 21 H 0.074 0.926 22 H 0.011 0.989 23 H 0.013 0.987 24 H 0.118 0.882 25 H 0.152 0.848 26 H 0.251 0.749 27 H 0.247 0.753 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.941 -15.068 -5.822 16.628 hybrid contribution 0.809 1.516 -0.787 1.890 sum 4.749 -13.552 -6.609 15.808 Atomic orbital electron populations 1.70134 1.08289 1.28145 1.50780 1.26039 0.95630 1.03826 0.94211 0.85315 0.78632 0.77674 0.78625 1.19458 1.21460 1.17999 1.21458 0.94186 0.90702 1.51828 0.90015 1.19151 0.94248 0.92368 0.95764 1.22546 0.94187 0.76699 1.06063 1.47920 1.25623 1.15728 1.17660 1.24096 1.05946 0.88519 1.00274 1.22894 0.99624 1.00405 0.97182 1.20236 0.85468 0.84226 0.95032 1.86503 1.24460 1.41045 1.82471 1.23559 0.98558 0.98677 0.97772 1.22791 1.01509 0.97329 0.94446 1.22974 0.96175 0.99075 0.98102 1.74918 1.23066 1.03366 1.14716 1.78343 1.05759 1.09477 1.17022 0.92642 0.98897 0.98668 0.88186 0.84789 0.74908 0.75331 0.90664 0.88431 0.88493 0.90149 0.90798 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 41.78 29.54 68.60 2.03 43.80 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.54 -28.34 9.11 25.60 0.23 -28.11 16 8 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.02 1.14 5.10 29.85 0.15 1.29 16 10 C 0.12 4.49 6.39 86.38 0.55 5.04 16 11 N -0.28 -10.11 3.44 -347.73 -1.20 -11.30 16 12 C -0.04 -1.00 11.19 83.49 0.93 -0.07 16 13 C -0.06 -1.87 6.23 41.60 0.26 -1.61 16 14 C 0.19 4.63 1.71 -11.01 -0.02 4.61 16 15 O -0.54 -10.92 13.40 -148.98 -2.00 -12.91 16 16 C -0.15 -2.94 7.47 31.18 0.23 -2.71 16 17 C -0.12 -2.28 8.02 31.18 0.25 -2.03 16 18 C -0.13 -3.05 7.34 31.12 0.23 -2.82 16 19 N -0.30 -11.74 11.72 -48.60 -0.57 -12.31 16 20 N -0.13 -5.51 12.91 37.02 0.48 -5.04 16 21 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 22 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H -0.01 -0.30 8.12 -2.39 -0.02 -0.32 16 24 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 25 H 0.13 3.78 8.07 -2.39 -0.02 3.76 16 26 H 0.23 3.70 8.06 -2.91 -0.02 3.68 16 27 H 0.40 4.58 8.78 -74.05 -0.65 3.93 16 28 H 0.07 1.74 8.09 -2.39 -0.02 1.72 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 2.36 7.68 -2.39 -0.02 2.35 16 Total: -1.00 -71.57 287.33 2.78 -68.79 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.46 Total: 10.47 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 3.29 Total: -25.85 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -1.00 Total: -84.31 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -2.00 Total: -12.91 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -71.57 2.78 -68.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849140944.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.604 kcal (2) G-P(sol) polarization free energy of solvation -71.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds