Wall clock time and date at job start Sun Mar 29 2020 22:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31770 * 119.04987 * 2 1 4 4 C 1.33015 * 120.90524 * 180.02562 * 3 2 1 5 5 O 1.35542 * 120.46215 * 179.97438 * 4 3 2 6 6 C 1.38919 * 119.06727 * 0.02562 * 4 3 2 7 7 C 1.39231 * 118.29161 * 359.97438 * 6 4 3 8 8 N 1.38606 * 120.50172 * 180.02562 * 7 6 4 9 9 C 1.46505 * 119.99600 * 0.02562 * 8 7 6 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 8 7 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99989 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46744 * 90.00434 * 16 14 12 18 18 H 1.48500 * 109.47304 * 210.00023 * 16 14 12 19 19 H 1.48498 * 109.47341 * 330.00626 * 16 14 12 20 20 N 1.31728 * 119.05344 * 180.30306 * 2 1 3 21 21 H 1.09000 * 109.47493 * 89.99494 * 1 2 3 22 22 H 1.08998 * 109.47354 * 209.99815 * 1 2 3 23 23 H 1.09001 * 109.47634 * 329.99485 * 1 2 3 24 24 H 0.96697 * 113.99765 * 270.02708 * 5 4 3 25 25 H 1.08002 * 120.85499 * 180.02562 * 6 4 3 26 26 H 0.96996 * 120.00794 * 179.97438 * 8 7 6 27 27 H 1.09002 * 109.47068 * 299.99726 * 9 8 7 28 28 H 1.09001 * 109.47372 * 59.99814 * 9 8 7 29 29 H 1.09002 * 109.47153 * 300.00008 * 10 9 8 30 30 H 1.08998 * 109.47533 * 59.99637 * 10 9 8 31 31 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 32 32 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 33 33 H 0.96996 * 119.99885 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1468 1.1519 0.0000 4 6 3.4763 1.1950 -0.0005 5 8 4.1253 2.3850 -0.0010 6 6 4.1902 0.0033 -0.0016 7 6 3.4775 -1.1929 -0.0015 8 7 4.1434 -2.4085 -0.0021 9 6 5.6081 -2.4413 -0.0021 10 6 6.0857 -3.8948 -0.0021 11 6 7.6152 -3.9292 -0.0028 12 6 8.0856 -5.3608 -0.0021 13 1 7.3656 -6.1659 -0.0017 14 6 9.4352 -5.6431 -0.0031 15 7 10.3121 -4.6629 -0.0041 16 14 10.0183 -7.4178 -0.0015 17 1 10.1715 -7.8896 -1.4012 18 1 11.3254 -7.5088 0.6973 19 1 9.0215 -8.2657 0.7003 20 7 2.1467 -1.1515 -0.0061 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 4.3129 2.7302 -0.8846 25 1 5.2702 0.0045 -0.0016 26 1 3.6398 -3.2374 -0.0017 27 1 5.9828 -1.9354 -0.8919 28 1 5.9829 -1.9361 0.8881 29 1 5.7110 -4.4004 0.8879 30 1 5.7109 -4.4005 -0.8920 31 1 7.9896 -3.4237 -0.8930 32 1 7.9904 -3.4235 0.8870 33 1 11.2615 -4.8615 -0.0044 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892326774.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:10 Heat of formation + Delta-G solvation = -8.571573 kcal Electronic energy + Delta-G solvation = -15772.328804 eV Core-core repulsion = 13025.932900 eV Total energy + Delta-G solvation = -2746.395903 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.03509 -37.84303 -36.82013 -34.05281 -32.49206 -32.14923 -30.54989 -28.38083 -26.71036 -23.58200 -23.44838 -21.70644 -20.59435 -18.81807 -18.10849 -16.54954 -16.32194 -15.53948 -15.28339 -14.91993 -14.60043 -14.45186 -14.36847 -13.60823 -12.94984 -12.62643 -12.40634 -12.07072 -12.01661 -11.88804 -11.06788 -10.89629 -10.79829 -10.63874 -10.49249 -9.95472 -9.60428 -9.55933 -9.26106 -9.21292 -8.44482 -8.09869 -6.09378 -4.12566 0.94723 1.33550 3.01945 3.26696 3.33431 3.36308 3.39163 3.80250 4.18079 4.38710 4.73730 5.04594 5.25898 5.26910 5.41539 5.42698 5.43011 5.52948 5.66591 5.72561 5.91266 6.13823 6.42450 6.48387 6.74909 6.86520 7.20381 7.39040 7.52750 7.63328 7.63892 7.88455 8.27135 8.29930 8.93688 9.52319 11.01907 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.048208 B = 0.003882 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.678606 B = 7211.716195 C = 7758.826822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.378 3.622 3 N -0.588 5.588 4 C 0.386 3.614 5 O -0.479 6.479 6 C -0.315 4.315 7 C 0.454 3.546 8 N -0.700 5.700 9 C 0.118 3.882 10 C -0.121 4.121 11 C 0.025 3.975 12 C -0.524 4.524 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.587 5.587 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.405 0.595 25 H 0.149 0.851 26 H 0.409 0.591 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.890 9.723 -1.711 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.109 3.891 3 N -0.319 5.319 4 C 0.203 3.797 5 O -0.286 6.286 6 C -0.345 4.345 7 C 0.210 3.790 8 N -0.330 5.330 9 C -0.005 4.005 10 C -0.159 4.159 11 C -0.013 4.013 12 C -0.562 4.562 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 N -0.315 5.315 21 H 0.103 0.897 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.264 0.736 25 H 0.166 0.834 26 H 0.245 0.755 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.337 9.744 -1.113 18.205 hybrid contribution 1.411 -1.119 -0.475 1.863 sum -13.926 8.625 -1.588 16.457 Atomic orbital electron populations 1.20550 0.85716 1.04029 1.03779 1.22623 0.97290 0.81629 0.87602 1.67758 1.09589 1.31214 1.23385 1.19011 0.86682 0.84980 0.89054 1.84692 1.75341 1.34491 1.34085 1.22139 1.02926 0.91666 1.17758 1.18438 0.87725 0.86923 0.85945 1.44954 1.07223 1.04482 1.76373 1.21860 0.76229 1.00904 1.01526 1.21888 1.01052 0.91568 1.01375 1.19030 0.87067 0.97543 0.97638 1.21185 0.91718 0.92201 1.51130 0.92583 1.25022 0.96939 0.97298 0.95135 1.69955 1.01594 1.31285 1.50470 0.86565 0.78180 0.84944 0.78154 1.20611 1.21155 1.19841 1.67811 1.07686 1.30954 1.25006 0.89654 0.89615 0.89667 0.73600 0.83359 0.75524 0.91668 0.91621 0.92395 0.92417 0.96247 0.96216 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.32 36.01 0.37 -0.38 16 2 C 0.38 5.11 7.64 -157.27 -1.20 3.91 16 3 N -0.59 -8.45 10.35 -10.86 -0.11 -8.57 16 4 C 0.39 5.37 7.82 -16.79 -0.13 5.24 16 5 O -0.48 -5.55 13.57 -18.32 -0.25 -5.79 16 6 C -0.32 -4.47 9.35 -38.96 -0.36 -4.84 16 7 C 0.45 6.78 7.70 -154.73 -1.19 5.59 16 8 N -0.70 -10.06 5.71 -60.32 -0.34 -10.41 16 9 C 0.12 1.83 4.92 -4.04 -0.02 1.81 16 10 C -0.12 -2.24 5.27 -26.74 -0.14 -2.38 16 11 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 12 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 13 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 16 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 20 N -0.59 -8.66 10.36 -10.02 -0.10 -8.76 16 21 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.41 2.50 9.06 45.56 0.41 2.91 16 25 H 0.15 1.97 6.85 -52.49 -0.36 1.61 16 26 H 0.41 5.50 8.60 -40.82 -0.35 5.15 16 27 H 0.07 0.99 7.97 -51.93 -0.41 0.58 16 28 H 0.07 1.02 7.97 -51.93 -0.41 0.61 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 290.21 15.07 4.37 4.37 Total: -1.00 -31.89 290.21 -7.58 -39.47 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.63 Total: 2.63 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -3.23 Total: -3.66 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.18 Total: -53.13 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.25 Total: -5.79 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.89 -7.58 -39.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892326774.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.895 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds