Wall clock time and date at job start Sun Mar 29 2020 21:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35773 * 117.00176 * 2 1 4 4 C 1.35120 * 125.84195 * 179.97438 * 3 2 1 5 5 C 1.41455 * 106.79238 * 180.02562 * 4 3 2 6 6 C 1.34441 * 106.89523 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.73864 * 179.97438 * 6 5 4 8 8 N 1.46909 * 109.46766 * 90.00355 * 7 6 5 9 9 C 1.47472 * 110.99922 * 265.96912 * 8 7 6 10 10 C 1.53512 * 87.93118 * 221.29729 * 9 8 7 11 11 C 1.50701 * 114.34155 * 139.68783 * 10 9 8 12 12 H 1.07997 * 119.99763 * 266.07731 * 11 10 9 13 13 C 1.37877 * 119.99971 * 86.07546 * 11 10 9 14 14 N 1.31515 * 120.00245 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99836 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46985 * 60.00188 * 15 13 11 17 17 H 1.48495 * 109.47135 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47536 * 300.00396 * 15 13 11 19 19 C 1.47473 * 110.99613 * 169.99732 * 8 7 6 20 20 O 1.34332 * 125.83965 * 0.02562 * 3 2 1 21 21 H 1.09002 * 109.46469 * 60.00389 * 1 2 3 22 22 H 1.08993 * 109.47038 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47265 * 300.01016 * 1 2 3 24 24 H 1.08003 * 126.60680 * 0.02562 * 4 3 2 25 25 H 1.07997 * 126.55147 * 179.73843 * 5 4 3 26 26 H 1.09001 * 109.46972 * 210.00243 * 7 6 5 27 27 H 1.08991 * 109.47298 * 330.00646 * 7 6 5 28 28 H 1.09000 * 113.48066 * 336.06579 * 9 8 7 29 29 H 1.09005 * 113.47710 * 106.53196 * 9 8 7 30 30 H 1.09000 * 114.17083 * 272.37711 * 10 9 8 31 31 H 0.96995 * 119.99765 * 179.97438 * 14 13 11 32 32 H 1.09003 * 113.47870 * 253.46613 * 19 8 7 33 33 H 1.08995 * 113.48008 * 23.88070 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.3806 1.4174 0.0005 5 6 3.5763 2.8183 0.0009 6 6 2.3564 3.3833 0.0000 7 6 2.0716 4.8631 0.0006 8 7 1.9804 5.3447 -1.3843 9 6 3.2789 5.8670 -1.8488 10 6 2.5137 7.0168 -2.5189 11 6 3.1801 8.3627 -2.3935 12 1 2.9079 9.0268 -1.5865 13 6 4.1372 8.7461 -3.3088 14 7 4.4691 7.9371 -4.2912 15 14 4.9626 10.4146 -3.1537 16 1 5.6615 10.5015 -1.8463 17 1 5.9469 10.5841 -4.2526 18 1 3.9363 11.4845 -3.2383 19 6 1.4708 6.7278 -1.4303 20 8 1.4323 2.4049 0.0005 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5140 0.8898 24 1 4.1503 0.6597 0.0006 25 1 4.5245 3.3353 0.0053 26 1 1.1286 5.0514 0.5137 27 1 2.8764 5.3877 0.5154 28 1 3.9308 6.1933 -1.0385 29 1 3.7830 5.2097 -2.5574 30 1 2.1748 6.7971 -3.5313 31 1 5.1421 8.2070 -4.9354 32 1 0.4423 6.8001 -1.7842 33 1 1.6391 7.2835 -0.5079 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895345051.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:01 Heat of formation + Delta-G solvation = 15.446401 kcal Electronic energy + Delta-G solvation = -16379.222908 eV Core-core repulsion = 13601.575751 eV Total energy + Delta-G solvation = -2777.647157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.44662 -38.97467 -38.31479 -33.15838 -32.68800 -31.14734 -28.37451 -26.92161 -25.09959 -24.75701 -22.45269 -21.76376 -20.22054 -18.66399 -18.48779 -16.83838 -16.60837 -15.42908 -15.31839 -15.07336 -14.60970 -14.38922 -13.92646 -13.19672 -12.91419 -12.70662 -12.61118 -12.15242 -11.95665 -11.60372 -11.52481 -11.13680 -10.98062 -10.64376 -10.33441 -9.86524 -9.68051 -9.29234 -8.98812 -8.46620 -8.10069 -7.71437 -6.07083 -4.12443 1.95958 2.54796 2.84071 3.29068 3.34690 3.36336 3.38393 4.38541 4.88593 4.94399 5.00505 5.14519 5.20043 5.26622 5.29246 5.40425 5.69991 5.81947 6.01146 6.06754 6.18064 6.27360 6.40467 6.62840 6.65074 6.68282 6.91512 7.12605 7.12928 7.44393 7.69460 7.86713 8.00229 8.33915 8.90732 9.52892 11.02400 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.054483 B = 0.004667 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.801720 B = 5997.780295 C = 6152.833576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.271 6.271 3 C 0.165 3.835 4 C -0.228 4.228 5 C -0.181 4.181 6 C 0.009 3.991 7 C 0.098 3.902 8 N -0.483 5.483 9 C 0.005 3.995 10 C 0.042 3.958 11 C -0.519 4.519 12 H 0.058 0.942 13 C 0.068 3.932 14 N -0.885 5.885 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.005 4.005 20 O -0.199 6.199 21 H 0.061 0.939 22 H 0.104 0.896 23 H 0.058 0.942 24 H 0.151 0.849 25 H 0.152 0.848 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.263 0.737 32 H 0.064 0.936 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.077 -11.162 9.053 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.186 6.186 3 C 0.072 3.928 4 C -0.248 4.248 5 C -0.201 4.201 6 C -0.040 4.040 7 C -0.030 4.030 8 N -0.206 5.206 9 C -0.124 4.124 10 C 0.023 3.977 11 C -0.557 4.557 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.522 5.522 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.133 4.133 20 O -0.100 6.100 21 H 0.079 0.921 22 H 0.122 0.878 23 H 0.076 0.924 24 H 0.168 0.832 25 H 0.169 0.831 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.534 -11.883 8.557 15.654 hybrid contribution 0.811 1.278 0.579 1.621 sum -4.723 -10.605 9.136 14.773 Atomic orbital electron populations 1.23023 0.77541 1.04114 1.02398 1.86425 1.22408 1.19343 1.90454 1.20286 0.89360 0.78252 1.04881 1.20733 0.92043 0.96765 1.15220 1.21368 0.98269 0.92834 1.07594 1.22082 0.85876 0.89295 1.06764 1.21129 1.02198 0.85259 0.94464 1.68930 1.16181 1.20239 1.15224 1.24169 0.90868 0.98137 0.99181 1.20089 0.90382 0.93270 0.93951 1.20982 1.21608 1.01078 1.12053 0.92390 1.25019 0.96676 0.96978 0.94858 1.69958 1.31547 1.36113 1.14588 0.86668 0.79298 0.84396 0.77695 1.20216 1.21229 1.20141 1.24045 1.00493 0.87838 1.00908 1.83895 1.38388 1.14082 1.73599 0.92068 0.87802 0.92355 0.83155 0.83057 0.90338 0.90589 0.92571 0.91599 0.91717 0.92743 0.91763 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.76 101.05 1.09 1.32 16 2 O -0.27 -3.68 10.57 -42.17 -0.45 -4.12 16 3 C 0.17 2.60 7.87 29.62 0.23 2.83 16 4 C -0.23 -3.49 10.94 -39.47 -0.43 -3.92 16 5 C -0.18 -2.92 10.80 -39.70 -0.43 -3.35 16 6 C 0.01 0.15 6.91 -35.65 -0.25 -0.10 16 7 C 0.10 1.66 5.34 -4.97 -0.03 1.64 16 8 N -0.48 -9.83 6.32 -246.13 -1.55 -11.38 16 9 C 0.01 0.12 7.28 -7.56 -0.06 0.06 16 10 C 0.04 1.04 3.76 -91.24 -0.34 0.70 16 11 C -0.52 -13.86 8.83 -34.44 -0.30 -14.16 16 12 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 13 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 14 N -0.89 -25.31 13.26 55.43 0.74 -24.58 16 15 Si 0.89 20.74 29.54 -169.99 -5.02 15.71 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C 0.00 -0.09 7.24 -7.56 -0.05 -0.15 16 20 O -0.20 -3.38 10.16 -18.24 -0.19 -3.56 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 25 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 26 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 27 H 0.08 1.22 7.30 -51.93 -0.38 0.84 16 28 H 0.06 1.24 7.38 -51.93 -0.38 0.86 16 29 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.11 7.87 -51.93 -0.41 0.70 16 LS Contribution 288.05 15.07 4.34 4.34 Total: -1.00 -29.44 288.05 -7.31 -36.75 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.52 Total: 0.21 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -0.67 Total: -13.37 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.82 Total: -35.96 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.63 Total: -7.69 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.44 -7.31 -36.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895345051.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.198 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds