Wall clock time and date at job start Sun Mar 29 2020 22:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47221 * 2 1 4 4 C 1.39873 * 125.89933 * 125.00156 * 3 2 1 5 5 C 1.35316 * 107.91987 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.12346 * 179.97438 * 5 4 3 7 7 C 1.50710 * 109.46965 * 85.00763 * 6 5 4 8 8 O 1.21295 * 119.99707 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99982 * 179.97438 * 7 6 5 10 10 C 1.37104 * 119.99798 * 179.97438 * 9 7 6 11 11 H 1.07992 * 119.99945 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99668 * 179.97438 * 10 9 7 13 13 N 1.31410 * 120.00513 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99570 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47522 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46798 * 120.00426 * 14 12 10 17 17 H 1.48497 * 109.47384 * 240.00358 * 14 12 10 18 18 N 1.34943 * 107.74531 * 0.02562 * 5 4 3 19 19 C 1.46500 * 126.03414 * 180.25880 * 18 5 4 20 20 N 1.30832 * 125.89900 * 304.97342 * 3 2 1 21 21 H 1.08994 * 109.47046 * 59.99487 * 1 2 3 22 22 H 1.08998 * 109.47590 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47112 * 299.99963 * 1 2 3 24 24 H 1.08998 * 109.47387 * 239.99588 * 2 1 3 25 25 H 1.09005 * 109.46916 * 119.99758 * 2 1 3 26 26 H 1.07997 * 126.03616 * 359.95235 * 4 3 2 27 27 H 1.09001 * 109.47071 * 204.99657 * 6 5 4 28 28 H 1.09003 * 109.47719 * 325.00496 * 6 5 4 29 29 H 0.96997 * 120.00396 * 359.97438 * 9 7 6 30 30 H 0.96997 * 119.99992 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.47763 * 269.71272 * 19 18 5 32 32 H 1.09004 * 109.47211 * 29.71722 * 19 18 5 33 33 H 1.09012 * 109.46942 * 149.71408 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9185 1.9774 0.9281 5 6 3.1221 3.2706 0.5856 6 6 4.0066 4.2526 1.3096 7 6 5.4250 4.1055 0.8219 8 8 5.6913 3.2836 -0.0295 9 7 6.3974 4.8871 1.3317 10 6 7.6878 4.7529 0.8883 11 1 7.9249 4.0211 0.1303 12 6 8.6902 5.5591 1.4136 13 7 8.4016 6.4498 2.3356 14 14 10.4482 5.3766 0.8090 15 1 10.5084 4.3119 -0.2243 16 1 10.9056 6.6618 0.2221 17 1 11.3281 5.0117 1.9482 18 7 2.3903 3.5234 -0.5196 19 6 2.3199 4.8012 -1.2328 20 7 1.7153 2.3466 -0.8684 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.3615 1.4655 1.7696 27 1 3.6589 5.2671 1.1146 28 1 3.9684 4.0550 2.3809 29 1 6.1843 5.5446 2.0122 30 1 9.1014 7.0124 2.7025 31 1 1.5073 5.4015 -0.8236 32 1 3.2622 5.3360 -1.1141 33 1 2.1377 4.6167 -2.2916 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931297974.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:04 Heat of formation + Delta-G solvation = 1.535170 kcal Electronic energy + Delta-G solvation = -16375.602579 eV Core-core repulsion = 13629.644936 eV Total energy + Delta-G solvation = -2745.957642 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.25725 -39.99852 -36.09214 -35.64978 -33.46097 -32.83440 -32.53251 -28.89605 -27.50448 -26.49471 -24.32017 -21.98154 -21.02059 -20.17565 -19.59865 -17.87448 -17.53918 -16.64751 -16.17865 -15.97188 -15.79122 -15.24882 -15.01519 -14.57052 -14.43383 -14.13059 -13.56592 -13.47177 -13.28866 -13.10838 -12.85879 -12.70763 -12.42687 -12.25359 -12.12631 -12.04967 -11.54878 -11.37084 -10.53587 -10.04674 -9.95148 -9.38221 -8.49125 -5.98021 0.88909 1.35200 1.42044 1.55368 1.66133 1.85548 1.99370 2.29932 3.17697 3.24206 3.57703 3.61510 4.00514 4.24805 4.29042 4.37094 4.44497 4.48298 4.53204 4.63335 4.64576 4.84153 4.89627 5.07292 5.16814 5.32938 5.39925 5.40565 5.82708 5.94825 6.14388 6.55696 6.80951 7.09531 7.51049 8.06709 8.68010 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045106 B = 0.005035 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.608623 B = 5559.790508 C = 5765.333260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.041 4.041 3 C 0.066 3.934 4 C -0.283 4.283 5 C 0.111 3.889 6 C -0.062 4.062 7 C 0.443 3.557 8 O -0.629 6.629 9 N -0.565 5.565 10 C -0.335 4.335 11 H 0.076 0.924 12 C -0.008 4.008 13 N -0.916 5.916 14 Si 0.990 3.010 15 H -0.276 1.276 16 H -0.270 1.270 17 H -0.270 1.270 18 N -0.377 5.377 19 C 0.094 3.906 20 N -0.326 5.326 21 H 0.046 0.954 22 H 0.082 0.918 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.150 0.850 27 H 0.120 0.880 28 H 0.133 0.867 29 H 0.400 0.600 30 H 0.279 0.721 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.670 -3.716 -0.173 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 C -0.099 4.099 4 C -0.312 4.312 5 C -0.018 4.018 6 C -0.104 4.104 7 C 0.230 3.770 8 O -0.517 6.517 9 N -0.202 5.202 10 C -0.464 4.464 11 H 0.094 0.906 12 C -0.208 4.208 13 N -0.556 5.556 14 Si 0.814 3.186 15 H -0.201 1.201 16 H -0.195 1.195 17 H -0.195 1.195 18 N -0.159 5.159 19 C -0.047 4.047 20 N -0.149 5.149 21 H 0.065 0.935 22 H 0.101 0.899 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.168 0.832 27 H 0.138 0.862 28 H 0.151 0.849 29 H 0.234 0.766 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.063 -3.667 -1.761 13.682 hybrid contribution 1.510 0.345 0.719 1.708 sum -11.553 -3.322 -1.042 12.066 Atomic orbital electron populations 1.21637 0.93323 1.02785 1.01607 1.20098 0.97101 0.86870 1.03985 1.22749 0.96779 0.97420 0.92959 1.21319 1.08698 0.94259 1.06899 1.20600 0.94652 0.96639 0.89878 1.20165 0.88973 0.99338 1.01894 1.20506 0.87577 0.83747 0.85151 1.90550 1.84231 1.39996 1.36891 1.41878 1.06914 1.34147 1.37264 1.19667 0.84683 1.20104 1.21948 0.90569 1.25982 1.03693 0.95029 0.96097 1.69658 1.35902 1.22204 1.27879 0.84914 0.77179 0.78283 0.78234 1.20085 1.19489 1.19479 1.48570 1.35575 1.10489 1.21312 1.22059 1.04187 0.80115 0.98292 1.77081 1.21765 0.92009 1.24029 0.93516 0.89929 0.92950 0.90250 0.88438 0.83244 0.86207 0.84867 0.76584 0.91156 0.88034 0.89849 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.87 71.98 0.71 -2.00 16 2 C -0.04 -1.00 6.51 29.85 0.19 -0.80 16 3 C 0.07 2.21 6.49 43.10 0.28 2.49 16 4 C -0.28 -10.00 10.64 21.99 0.23 -9.77 16 5 C 0.11 3.99 5.42 41.41 0.22 4.21 16 6 C -0.06 -2.08 5.80 29.10 0.17 -1.91 16 7 C 0.44 20.62 7.78 87.66 0.68 21.30 16 8 O -0.63 -35.31 15.61 -3.08 -0.05 -35.35 16 9 N -0.57 -28.04 5.29 -306.98 -1.62 -29.66 16 10 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 11 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 12 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 13 N -0.92 -47.97 13.05 21.66 0.28 -47.69 16 14 Si 0.99 42.21 29.55 68.60 2.03 44.24 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 18 N -0.38 -13.07 4.01 -356.02 -1.43 -14.50 16 19 C 0.09 2.43 11.07 127.77 1.41 3.84 16 20 N -0.33 -11.71 12.54 -47.39 -0.59 -12.31 16 21 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.10 1.97 8.12 -2.38 -0.02 1.95 16 26 H 0.15 4.82 8.06 -2.91 -0.02 4.80 16 27 H 0.12 3.24 7.50 -2.39 -0.02 3.22 16 28 H 0.13 3.70 8.14 -2.39 -0.02 3.69 16 29 H 0.40 18.48 7.90 -92.71 -0.73 17.75 16 30 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 2.21 7.54 -2.39 -0.02 2.19 16 33 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -71.50 291.71 4.19 -67.31 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.38 Total: 28.36 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 5.19 Total: -0.40 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -3.36 Total: -104.16 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.05 Total: -35.35 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -71.50 4.19 -67.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297974.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.849 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds