Wall clock time and date at job start Sun Mar 29 2020 21:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46587 * 2 1 4 4 O 1.42895 * 109.47128 * 119.99946 * 2 1 3 5 5 C 1.52999 * 109.46789 * 240.00168 * 2 1 3 6 6 N 1.46508 * 109.46666 * 179.97438 * 5 2 1 7 7 C 1.39782 * 119.99596 * 179.97438 * 6 5 2 8 8 C 1.38952 * 120.00069 * 179.97438 * 7 6 5 9 9 C 1.38007 * 119.99068 * 180.02562 * 8 7 6 10 10 C 1.38902 * 120.00707 * 0.02562 * 9 8 7 11 11 O 1.35799 * 119.99285 * 179.97438 * 10 9 8 12 12 C 1.34809 * 117.00240 * 5.54212 * 11 10 9 13 13 H 1.08002 * 120.00081 * 354.94518 * 12 11 10 14 14 C 1.38619 * 120.00270 * 174.94443 * 12 11 10 15 15 N 1.31585 * 120.00083 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00318 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47528 * 59.99496 * 16 14 12 18 18 H 1.48497 * 109.47578 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47018 * 300.00008 * 16 14 12 20 20 C 1.38898 * 120.01226 * 0.25730 * 10 9 8 21 21 C 1.38012 * 120.00332 * 359.44679 * 20 10 9 22 22 H 1.09004 * 109.47256 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47176 * 299.99746 * 1 2 3 24 24 H 1.08997 * 109.47886 * 60.00148 * 1 2 3 25 25 H 0.96706 * 113.99861 * 60.00394 * 4 2 1 26 26 H 1.08997 * 109.47229 * 60.00205 * 5 2 1 27 27 H 1.08998 * 109.47418 * 299.99323 * 5 2 1 28 28 H 0.96992 * 119.99615 * 359.97438 * 6 5 2 29 29 H 1.08001 * 120.00614 * 359.97438 * 8 7 6 30 30 H 1.08006 * 119.99831 * 180.02562 * 9 8 7 31 31 H 0.96997 * 120.00089 * 180.02562 * 15 14 12 32 32 H 1.07997 * 119.99637 * 179.70063 * 20 10 9 33 33 H 1.07995 * 120.00083 * 180.27172 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0399 -0.7212 -1.2493 6 7 3.5050 -0.7207 -1.2496 7 6 4.2039 -1.3263 -2.2978 8 6 5.5934 -1.3254 -2.2984 9 6 6.2831 -1.9229 -3.3337 10 6 5.5885 -2.5247 -4.3751 11 8 6.2675 -3.1122 -5.3940 12 6 7.6090 -3.1778 -5.2779 13 1 8.1028 -2.7019 -4.4435 14 6 8.3547 -3.8562 -6.2293 15 7 7.7531 -4.4365 -7.2456 16 14 10.2134 -3.9478 -6.0681 17 1 10.5672 -4.6175 -4.7907 18 1 10.7713 -4.7242 -7.2044 19 1 10.7796 -2.5750 -6.0805 20 6 4.1995 -2.5206 -4.3777 21 6 3.5092 -1.9286 -3.3396 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 1.7210 -1.5952 1.2328 26 1 1.6766 -0.2074 -2.1392 27 1 1.6767 -1.7489 -1.2493 28 1 3.9899 -0.3001 -0.5224 29 1 6.1335 -0.8564 -1.4893 30 1 7.3632 -1.9226 -3.3341 31 1 8.2749 -4.9116 -7.9111 32 1 3.6597 -2.9844 -5.1900 33 1 2.4293 -1.9293 -3.3394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118090418.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:53 Heat of formation + Delta-G solvation = -54.082864 kcal Electronic energy + Delta-G solvation = -16014.025079 eV Core-core repulsion = 13233.362907 eV Total energy + Delta-G solvation = -2780.662172 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.10789 -38.16986 -36.66692 -33.99312 -32.09201 -31.27941 -30.15457 -27.83855 -25.74248 -24.55192 -22.53458 -21.37797 -20.64553 -17.85189 -17.05809 -16.89680 -16.16054 -16.01078 -14.94287 -14.40867 -14.18528 -13.70634 -13.61254 -13.38853 -13.20775 -12.71378 -12.58622 -12.38337 -12.24336 -11.53608 -11.42262 -11.27572 -11.10516 -10.90000 -10.57485 -10.35143 -10.27216 -9.21789 -9.15861 -8.42281 -8.15022 -6.37557 -6.30344 -3.87704 2.22276 2.59653 3.20249 3.21527 3.23916 3.72745 4.07826 4.23186 4.56271 4.70365 4.81659 4.91016 5.21560 5.31886 5.38712 5.43539 5.58209 5.69145 5.73414 5.80116 5.89431 6.23516 6.26067 6.56442 6.88586 6.92673 7.15616 7.33617 7.37937 7.47348 7.66415 8.01206 8.14016 8.28809 9.15442 9.90056 10.88334 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.065281 B = 0.004261 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.812375 B = 6569.360276 C = 6904.742813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.092 3.908 3 H 0.101 0.899 4 O -0.562 6.562 5 C 0.102 3.898 6 N -0.755 5.755 7 C 0.123 3.877 8 C -0.142 4.142 9 C -0.189 4.189 10 C 0.113 3.887 11 O -0.189 6.189 12 C -0.387 4.387 13 H 0.088 0.912 14 C 0.036 3.964 15 N -0.870 5.870 16 Si 0.938 3.062 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.271 1.271 20 C -0.151 4.151 21 C -0.147 4.147 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.376 0.624 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.395 0.605 29 H 0.106 0.894 30 H 0.127 0.873 31 H 0.268 0.732 32 H 0.116 0.884 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 6.905 12.263 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.032 3.968 3 H 0.119 0.881 4 O -0.367 6.367 5 C -0.023 4.023 6 N -0.392 5.392 7 C 0.025 3.975 8 C -0.164 4.164 9 C -0.209 4.209 10 C 0.060 3.940 11 O -0.094 6.094 12 C -0.464 4.464 13 H 0.105 0.895 14 C -0.167 4.167 15 N -0.507 5.507 16 Si 0.763 3.237 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.197 1.197 20 C -0.171 4.171 21 C -0.170 4.170 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.224 0.776 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.229 0.771 29 H 0.124 0.876 30 H 0.145 0.855 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.665 7.208 11.881 17.517 hybrid contribution 0.829 -0.393 0.200 0.939 sum -9.836 6.815 12.081 17.004 Atomic orbital electron populations 1.22431 0.95730 1.02882 1.03022 1.22132 0.93216 0.97005 0.84410 0.88068 1.86574 1.77330 1.29242 1.43560 1.21830 0.82875 0.99876 0.97756 1.44085 1.03464 1.66174 1.25484 1.17417 0.90817 0.99147 0.90096 1.20246 0.91725 1.04620 0.99782 1.20999 1.00367 1.03711 0.95834 1.19240 0.91583 0.94325 0.88829 1.83984 1.20512 1.68642 1.36225 1.21191 0.78941 1.35128 1.11161 0.89507 1.25211 1.00148 0.96029 0.95285 1.70040 1.36061 1.32993 1.11557 0.85836 0.81119 0.78638 0.78114 1.19677 1.20433 1.19676 1.20013 0.91540 1.05472 1.00045 1.20155 0.98011 1.03788 0.95017 0.92023 0.91548 0.91251 0.77624 0.92285 0.92902 0.77144 0.87588 0.85486 0.92265 0.86549 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 9.53 37.16 0.35 -0.86 16 2 C 0.09 0.80 3.67 -26.73 -0.10 0.70 16 3 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 4 O -0.56 -5.47 13.09 -35.23 -0.46 -5.93 16 5 C 0.10 1.11 4.58 -4.04 -0.02 1.09 16 6 N -0.76 -10.48 5.63 -58.58 -0.33 -10.81 16 7 C 0.12 2.19 6.66 -83.71 -0.56 1.63 16 8 C -0.14 -2.70 9.89 -39.40 -0.39 -3.09 16 9 C -0.19 -4.24 9.16 -39.42 -0.36 -4.60 16 10 C 0.11 2.81 6.65 -39.09 -0.26 2.55 16 11 O -0.19 -5.55 9.76 -0.04 0.00 -5.55 16 12 C -0.39 -11.16 9.48 30.87 0.29 -10.86 16 13 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 14 C 0.04 1.02 5.49 -17.52 -0.10 0.93 16 15 N -0.87 -26.24 13.67 55.48 0.76 -25.48 16 16 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 C -0.15 -3.28 9.98 -39.42 -0.39 -3.67 16 21 C -0.15 -2.72 9.30 -39.40 -0.37 -3.09 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.38 2.61 9.05 45.56 0.41 3.02 16 26 H 0.06 0.64 7.95 -51.93 -0.41 0.23 16 27 H 0.05 0.57 7.95 -51.93 -0.41 0.16 16 28 H 0.39 5.16 8.36 -40.82 -0.34 4.81 16 29 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.13 2.84 5.63 -52.48 -0.30 2.55 16 31 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 33 H 0.11 1.70 6.73 -52.49 -0.35 1.35 16 LS Contribution 285.26 15.07 4.30 4.30 Total: -1.00 -32.45 285.26 -6.00 -38.44 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -3.35 Total: 8.24 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -1.89 Total: -19.28 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.43 Total: -36.30 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.46 Total: -11.48 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.45 -6.00 -38.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118090418.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.639 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds