Wall clock time and date at job start Sun Mar 29 2020 21:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39839 * 126.45455 * 2 1 4 4 C 1.35452 * 107.86271 * 180.26341 * 3 2 1 5 5 N 1.35525 * 108.87395 * 359.74497 * 4 3 2 6 6 H 0.96998 * 125.68287 * 180.02562 * 5 4 3 7 7 C 1.37655 * 108.64376 * 359.97438 * 5 4 3 8 8 C 1.46680 * 126.23468 * 180.02562 * 7 5 4 9 9 O 1.21693 * 120.00097 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99703 * 0.02562 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72441 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.36936 * 119.99757 * 179.97438 * 13 12 11 15 15 H 1.07992 * 120.00476 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31614 * 120.00323 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00121 * 18 16 14 20 20 H 1.48506 * 109.46994 * 210.00426 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99871 * 18 16 14 22 22 H 1.09006 * 109.46972 * 270.18088 * 1 2 3 23 23 H 1.08993 * 109.47246 * 30.18149 * 1 2 3 24 24 H 1.09001 * 109.46620 * 150.18607 * 1 2 3 25 25 H 1.08005 * 126.07122 * 0.02562 * 3 2 1 26 26 H 1.08004 * 125.56004 * 179.71291 * 4 3 2 27 27 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 28 28 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 29 29 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 30 30 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 31 31 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 32 32 H 0.97000 * 120.00386 * 359.97438 * 13 12 11 33 33 H 0.96996 * 120.00458 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1248 0.0000 4 6 3.6218 0.6929 -0.0059 5 7 3.6285 -0.6623 -0.0039 6 1 4.4191 -1.2242 -0.0068 7 6 2.3263 -1.1088 0.0040 8 6 1.8900 -2.5092 0.0090 9 8 0.7028 -2.7766 0.0155 10 7 2.8039 -3.4998 0.0065 11 6 2.3681 -4.8984 0.0176 12 6 3.5936 -5.8145 0.0190 13 7 3.1578 -7.2131 0.0308 14 6 4.0863 -8.2195 0.0336 15 1 5.1398 -7.9823 0.0275 16 6 3.6734 -9.5448 0.0452 17 7 2.3894 -9.8340 0.0542 18 14 4.9400 -10.9177 0.0498 19 1 5.2820 -11.2712 1.4509 20 1 4.3814 -12.1089 -0.6391 21 1 6.1637 -10.4646 -0.6592 22 1 -0.3633 0.0032 1.0277 23 1 -0.3633 0.8883 -0.5166 24 1 -0.3632 -0.8917 -0.5110 25 1 2.0136 2.1550 0.0004 26 1 4.4972 1.3254 -0.0118 27 1 3.7502 -3.2867 0.0017 28 1 1.7729 -5.0865 0.9113 29 1 1.7660 -5.0985 -0.8687 30 1 4.1887 -5.6264 -0.8745 31 1 4.1957 -5.6145 0.9054 32 1 2.2115 -7.4262 0.0366 33 1 2.1009 -10.7600 0.0619 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126514853.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:59 Heat of formation + Delta-G solvation = 13.060003 kcal Electronic energy + Delta-G solvation = -15894.624957 eV Core-core repulsion = 13149.167069 eV Total energy + Delta-G solvation = -2745.457888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.44306 -38.97086 -35.75375 -33.98693 -32.58173 -31.33496 -29.92550 -27.88111 -26.65912 -23.83543 -22.19641 -21.55791 -20.70333 -19.20492 -18.66002 -17.25407 -15.88873 -15.55560 -15.35684 -14.58967 -14.53619 -13.86609 -13.79822 -13.41320 -13.20868 -13.15393 -12.81681 -12.69139 -12.33711 -11.66299 -11.47901 -11.14819 -10.85884 -10.83502 -10.15375 -9.94928 -9.74684 -9.06183 -8.93354 -8.90836 -8.26406 -7.02993 -5.82326 -3.13486 1.39362 2.59167 2.93635 3.21330 3.40280 3.40428 3.45269 3.47239 4.55280 4.82438 4.83797 5.06483 5.18234 5.46878 5.47628 5.64604 5.74049 5.80025 5.83988 5.90853 6.04523 6.09317 6.28004 6.43224 6.55770 6.64951 6.70366 6.83095 7.20202 7.56955 7.62665 8.25249 8.35092 9.46400 10.00669 10.35530 11.40179 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.058395 B = 0.003893 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.374938 B = 7190.740881 C = 7644.353231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.077 4.077 3 C -0.213 4.213 4 C 0.022 3.978 5 N -0.541 5.541 6 H 0.417 0.583 7 C -0.056 4.056 8 C 0.584 3.416 9 O -0.526 6.526 10 N -0.725 5.725 11 C 0.112 3.888 12 C 0.145 3.855 13 N -0.729 5.729 14 C -0.246 4.246 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.930 5.930 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.142 0.858 26 H 0.170 0.830 27 H 0.392 0.608 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.387 0.613 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 21.808 -0.186 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.238 4.238 4 C -0.114 4.114 5 N -0.137 5.137 6 H 0.254 0.746 7 C -0.168 4.168 8 C 0.372 3.628 9 O -0.403 6.403 10 N -0.376 5.376 11 C -0.011 4.011 12 C 0.017 3.983 13 N -0.374 5.374 14 C -0.377 4.377 15 H 0.089 0.911 16 C -0.207 4.207 17 N -0.578 5.578 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.207 1.207 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.100 0.900 25 H 0.159 0.841 26 H 0.187 0.813 27 H 0.225 0.775 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.221 0.779 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.228 21.332 -0.193 21.449 hybrid contribution 1.417 -0.960 0.031 1.712 sum 3.645 20.372 -0.162 20.696 Atomic orbital electron populations 1.20349 0.89309 1.02886 1.02226 1.19968 0.95947 0.90768 1.01873 1.20797 0.91864 0.98751 1.12376 1.21980 0.99530 0.82985 1.06908 1.41972 1.07245 1.07294 1.57208 0.74627 1.20336 0.83682 0.93711 1.19103 1.17043 0.85992 0.82922 0.76883 1.90821 1.15973 1.83204 1.50275 1.45833 1.09073 1.07026 1.75639 1.21609 0.98432 0.78245 1.02853 1.20751 0.93320 0.85966 0.98304 1.42181 1.06944 0.98601 1.89693 1.19182 0.88979 0.85894 1.43682 0.91060 1.24785 0.96117 0.97284 1.02548 1.69662 1.12945 1.18140 1.57007 0.86147 0.80276 0.81893 0.77571 1.21592 1.21636 1.20707 0.91555 0.92126 0.90040 0.84060 0.81279 0.77520 0.91008 0.91001 0.95887 0.95907 0.77934 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.83 36.01 0.35 -0.72 16 2 C -0.08 -0.96 6.21 -104.16 -0.65 -1.60 16 3 C -0.21 -2.08 10.76 -39.98 -0.43 -2.51 16 4 C 0.02 0.17 11.89 -16.92 -0.20 -0.03 16 5 N -0.54 -4.85 5.99 -9.39 -0.06 -4.91 16 6 H 0.42 2.54 8.19 -40.82 -0.33 2.20 16 7 C -0.06 -0.71 7.06 -81.98 -0.58 -1.29 16 8 C 0.58 9.00 7.79 -12.85 -0.10 8.90 16 9 O -0.53 -9.90 14.81 5.20 0.08 -9.82 16 10 N -0.72 -10.15 5.55 -61.61 -0.34 -10.49 16 11 C 0.11 1.94 5.79 -4.04 -0.02 1.91 16 12 C 0.14 2.82 6.37 -4.04 -0.03 2.80 16 13 N -0.73 -18.53 5.60 -59.91 -0.34 -18.86 16 14 C -0.25 -6.87 9.99 -15.06 -0.15 -7.02 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 17 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 18 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 1.13 6.49 -51.93 -0.34 0.79 16 25 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 26 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 27 H 0.39 4.21 7.60 -40.82 -0.31 3.90 16 28 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.39 10.41 7.67 -40.82 -0.31 10.09 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 288.12 15.07 4.34 4.34 Total: -1.00 -33.88 288.12 -6.73 -40.61 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -4.22 Total: 9.39 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.90 Total: 0.03 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.01 Total: -61.74 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.88 -6.73 -40.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126514853.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.672 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds