Wall clock time and date at job start Sun Mar 29 2020 21:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99740 * 2 1 4 4 C 1.53003 * 109.47043 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47102 * 64.99542 * 4 3 2 6 6 C 1.35949 * 116.99811 * 180.02562 * 5 4 3 7 7 C 1.38790 * 119.96697 * 0.29913 * 6 5 4 8 8 C 1.37998 * 120.03643 * 180.26029 * 7 6 5 9 9 C 1.39085 * 119.96244 * 359.44069 * 8 7 6 10 10 N 1.39406 * 120.03567 * 180.30389 * 9 8 7 11 11 C 1.36826 * 120.00325 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99861 * 0.02562 * 11 10 9 13 13 C 1.38752 * 120.00391 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00126 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00371 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47017 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47368 * 120.00163 * 15 13 11 18 18 H 1.48508 * 109.47065 * 239.99795 * 15 13 11 19 19 C 1.39078 * 119.93296 * 0.28111 * 9 8 7 20 20 C 1.38002 * 119.96679 * 0.02562 * 19 9 8 21 21 H 1.09008 * 109.47062 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47790 * 300.00410 * 1 2 3 23 23 H 1.09002 * 109.47332 * 60.00736 * 1 2 3 24 24 H 1.08992 * 109.47595 * 59.99454 * 3 2 1 25 25 H 1.09004 * 109.46822 * 299.99295 * 3 2 1 26 26 H 1.09003 * 109.46981 * 304.99698 * 4 3 2 27 27 H 1.09000 * 109.47244 * 184.99490 * 4 3 2 28 28 H 1.08004 * 119.98512 * 0.02562 * 7 6 5 29 29 H 1.08002 * 120.02282 * 179.72398 * 8 7 6 30 30 H 0.97002 * 119.99747 * 0.02562 * 10 9 8 31 31 H 0.96995 * 120.00136 * 179.97438 * 14 13 11 32 32 H 1.07993 * 120.01856 * 180.02562 * 19 9 8 33 33 H 1.07994 * 119.98629 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3035 0.3973 -1.3806 7 6 6.1815 0.7886 -0.3795 8 6 7.5399 0.6095 -0.5433 9 6 8.0283 0.0258 -1.7075 10 7 9.3999 -0.1616 -1.8718 11 6 9.8795 -0.7363 -3.0171 12 1 9.1955 -1.0445 -3.7940 13 6 11.2447 -0.9224 -3.1809 14 7 12.0785 -0.5465 -2.2342 15 14 11.8996 -1.7064 -4.7448 16 1 10.7658 -2.0373 -5.6449 17 1 12.8146 -0.7576 -5.4286 18 1 12.6390 -2.9484 -4.4038 19 6 7.1468 -0.3711 -2.7073 20 6 5.7893 -0.1849 -2.5433 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5137 -0.8901 24 1 1.6885 1.8464 0.8898 25 1 1.6886 1.8463 -0.8901 26 1 3.8507 0.5686 0.8428 27 1 3.9784 2.1766 0.0901 28 1 5.8016 1.2371 0.5266 29 1 8.2233 0.9182 0.2340 30 1 10.0142 0.1148 -1.1738 31 1 13.0328 -0.6769 -2.3486 32 1 7.5244 -0.8248 -3.6116 33 1 5.1045 -0.4934 -3.3193 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:19 Heat of formation + Delta-G solvation = -55.457171 kcal Electronic energy + Delta-G solvation = -15907.112088 eV Core-core repulsion = 13126.390322 eV Total energy + Delta-G solvation = -2780.721767 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.25335 -37.97235 -36.95421 -34.40560 -31.67609 -30.55048 -29.84206 -27.17545 -26.39777 -24.50277 -23.07240 -21.53774 -20.40419 -17.78067 -17.39984 -16.77968 -16.31782 -15.65838 -15.39825 -14.74951 -14.66819 -14.25717 -13.62344 -13.36942 -12.73963 -12.50973 -12.30081 -12.15695 -11.92365 -11.61375 -11.44307 -11.20658 -11.00536 -10.79137 -10.42250 -10.28859 -9.82801 -9.66973 -9.63611 -8.46796 -8.06064 -6.48458 -6.41120 -3.65228 2.35039 2.62664 3.19578 3.21100 3.24943 3.66840 3.85185 4.11122 4.70508 4.92389 5.10637 5.18687 5.22022 5.27056 5.31892 5.36863 5.45640 5.55113 5.69872 5.72847 5.84228 6.31882 6.41135 6.68061 6.93595 7.03581 7.10936 7.34134 7.40262 7.49885 7.69415 7.88685 8.36763 8.83755 9.44204 9.63753 10.69159 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.064705 B = 0.004089 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.631619 B = 6845.939718 C = 7172.525442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.067 3.933 5 O -0.319 6.319 6 C -0.006 4.006 7 C -0.138 4.138 8 C -0.212 4.212 9 C 0.191 3.809 10 N -0.571 5.571 11 C -0.296 4.296 12 H 0.101 0.899 13 C 0.015 3.985 14 N -0.899 5.899 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.192 4.192 20 C -0.083 4.083 21 H 0.085 0.915 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.398 0.602 31 H 0.272 0.728 32 H 0.122 0.878 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.659 3.412 3.921 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C -0.012 4.012 4 C -0.009 4.009 5 O -0.235 6.235 6 C -0.052 4.052 7 C -0.158 4.158 8 C -0.237 4.237 9 C 0.072 3.928 10 N -0.176 5.176 11 C -0.426 4.426 12 H 0.118 0.882 13 C -0.187 4.187 14 N -0.537 5.537 15 Si 0.757 3.243 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.216 4.216 20 C -0.102 4.102 21 H 0.103 0.897 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.233 0.767 31 H 0.082 0.918 32 H 0.140 0.860 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.258 3.073 3.603 15.975 hybrid contribution 0.642 0.113 -0.130 0.665 sum -14.615 3.186 3.473 15.357 Atomic orbital electron populations 1.22734 0.81427 1.02739 0.99681 1.88010 1.19282 1.27421 1.95322 1.22599 0.92568 0.85372 1.00706 1.22526 0.92440 0.97885 0.88060 1.85976 1.21372 1.78623 1.37512 1.18338 0.81180 1.08544 0.97170 1.20606 0.93498 1.03830 0.97850 1.20050 0.94525 1.10663 0.98451 1.17838 0.85042 0.96143 0.93755 1.40913 1.01771 1.56107 1.18785 1.19729 0.91640 1.35251 0.95989 0.88161 1.25236 0.95864 0.98392 0.99160 1.69704 1.03661 1.47117 1.33253 0.85792 0.79041 0.78612 0.80883 1.19259 1.20722 1.20711 1.20300 0.91300 1.09491 1.00508 1.19947 0.94603 1.00278 0.95395 0.89682 0.94357 0.94104 0.91827 0.92394 0.92069 0.91423 0.87534 0.87591 0.76737 0.91831 0.86008 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.09 10.67 -40.09 -0.43 -5.52 16 3 C 0.06 0.73 6.32 37.16 0.23 0.96 16 4 C 0.07 0.92 5.12 37.16 0.19 1.11 16 5 O -0.32 -5.80 10.10 -24.44 -0.25 -6.05 16 6 C -0.01 -0.12 6.69 -39.17 -0.26 -0.38 16 7 C -0.14 -2.64 9.03 -39.47 -0.36 -3.00 16 8 C -0.21 -4.43 9.89 -39.36 -0.39 -4.82 16 9 C 0.19 4.44 6.62 -83.79 -0.55 3.88 16 10 N -0.57 -14.44 5.44 -9.59 -0.05 -14.50 16 11 C -0.30 -7.79 9.55 -15.13 -0.14 -7.93 16 12 H 0.10 2.54 5.68 -52.48 -0.30 2.24 16 13 C 0.02 0.40 5.50 -17.45 -0.10 0.31 16 14 N -0.90 -24.61 13.05 55.49 0.72 -23.89 16 15 Si 0.93 20.34 29.55 -169.99 -5.02 15.31 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.19 -4.24 9.30 -39.36 -0.37 -4.61 16 20 C -0.08 -1.69 9.98 -39.46 -0.39 -2.08 16 21 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 22 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.84 7.64 -51.93 -0.40 0.44 16 27 H 0.07 0.81 7.67 -51.93 -0.40 0.41 16 28 H 0.11 1.71 6.29 -52.48 -0.33 1.38 16 29 H 0.11 2.06 8.06 -52.49 -0.42 1.63 16 30 H 0.40 10.21 7.90 -40.82 -0.32 9.89 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.12 2.68 5.95 -52.49 -0.31 2.36 16 33 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -29.38 285.41 -5.90 -35.29 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.15 Total: 10.22 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.03 Total: -15.17 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.67 Total: -38.38 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.67 Total: -11.56 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.38 -5.90 -35.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.170 kcal (2) G-P(sol) polarization free energy of solvation -29.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds