Wall clock time and date at job start Sun Mar 29 2020 21:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00023 * 2 1 4 4 O 1.42899 * 109.47507 * 85.76051 * 3 2 1 5 5 C 1.42903 * 114.00314 * 286.12617 * 4 3 2 6 6 C 1.50703 * 109.47212 * 205.76284 * 3 2 1 7 7 C 1.38068 * 120.04369 * 345.25151 * 6 3 2 8 8 C 1.38308 * 120.09086 * 180.27949 * 7 6 3 9 9 C 1.38357 * 120.17612 * 359.74217 * 8 7 6 10 10 C 1.38022 * 120.08963 * 359.97438 * 9 8 7 11 11 C 1.39059 * 120.04487 * 165.00019 * 6 3 2 12 12 N 1.39300 * 120.09060 * 359.97438 * 11 6 3 13 13 C 1.36846 * 119.99573 * 179.72188 * 12 11 6 14 14 H 1.07992 * 120.00675 * 0.02562 * 13 12 11 15 15 C 1.38804 * 119.99477 * 179.72687 * 13 12 11 16 16 N 1.31590 * 119.99849 * 0.27766 * 15 13 12 17 17 Si 1.86796 * 119.99813 * 180.27682 * 15 13 12 18 18 H 1.48508 * 109.47279 * 60.00117 * 17 15 13 19 19 H 1.48500 * 109.47080 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47363 * 300.00125 * 17 15 13 21 21 H 1.09004 * 109.47633 * 306.53870 * 1 2 3 22 22 H 1.09005 * 109.47007 * 66.53896 * 1 2 3 23 23 H 1.09001 * 109.47197 * 186.53769 * 1 2 3 24 24 H 1.09002 * 109.47186 * 325.76357 * 3 2 1 25 25 H 1.09000 * 109.47106 * 76.31381 * 5 4 3 26 26 H 1.08995 * 109.47273 * 196.31963 * 5 4 3 27 27 H 1.09006 * 109.46307 * 316.31310 * 5 4 3 28 28 H 1.08000 * 119.95437 * 0.02562 * 7 6 3 29 29 H 1.08003 * 119.91332 * 179.76535 * 8 7 6 30 30 H 1.08003 * 119.95356 * 179.97438 * 9 8 7 31 31 H 1.08007 * 120.04201 * 180.02562 * 10 9 8 32 32 H 0.96994 * 120.00064 * 359.72629 * 12 11 6 33 33 H 0.97000 * 119.99725 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.1130 1.7811 1.3436 5 6 0.8651 2.1747 1.9179 6 6 3.3835 1.2439 -0.6176 7 6 4.0080 0.0252 -0.7943 8 6 5.2707 -0.0319 -1.3556 9 6 5.9110 1.1304 -1.7472 10 6 5.2911 2.3521 -1.5793 11 6 4.0212 2.4139 -1.0150 12 7 3.3922 3.6450 -0.8437 13 6 4.0240 4.7957 -1.2303 14 1 5.0099 4.7495 -1.6685 15 6 3.3948 6.0219 -1.0649 16 7 2.1933 6.0781 -0.5313 17 14 4.2539 7.5920 -1.5996 18 1 4.5395 7.5288 -3.0556 19 1 3.3768 8.7567 -1.3178 20 1 5.5281 7.7387 -0.8513 21 1 -0.3634 0.6118 0.8257 22 1 -0.3633 0.4092 -0.9428 23 1 -0.3634 -1.0210 0.1170 24 1 1.3818 1.9829 -0.5782 25 1 0.2973 1.2870 2.1967 26 1 1.0485 2.7819 2.8043 27 1 0.2976 2.7555 1.1907 28 1 3.5115 -0.8843 -0.4900 29 1 5.7581 -0.9864 -1.4891 30 1 6.8972 1.0816 -2.1848 31 1 5.7915 3.2589 -1.8856 32 1 2.5066 3.6865 -0.4505 33 1 1.7538 6.9351 -0.4154 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:23 Heat of formation + Delta-G solvation = -60.326187 kcal Electronic energy + Delta-G solvation = -17109.518767 eV Core-core repulsion = 14328.585864 eV Total energy + Delta-G solvation = -2780.932903 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.28067 -37.72090 -35.57848 -34.92978 -31.93612 -30.82869 -28.15332 -27.28922 -25.71959 -24.63893 -24.19563 -20.95579 -20.34455 -17.69610 -16.87610 -16.74538 -16.64089 -15.52304 -14.57837 -14.47525 -14.07594 -13.86102 -13.34135 -13.27610 -12.98308 -12.72915 -12.36815 -12.18630 -11.70267 -11.44857 -11.22465 -11.11602 -10.69413 -10.41393 -10.20523 -10.18740 -9.73094 -9.62634 -9.43111 -8.72900 -7.90038 -6.71708 -6.57878 -3.76139 2.34408 2.66437 3.15309 3.17298 3.18431 3.96430 4.04216 4.34784 4.79832 5.15573 5.24203 5.28682 5.40104 5.52591 5.57888 5.64623 5.75043 5.81655 5.95930 6.03745 6.07537 6.41152 6.64200 6.89074 7.09201 7.20632 7.31115 7.40530 7.57682 7.62258 7.72835 7.73833 8.12200 8.74109 9.33076 9.52472 10.59093 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021329 B = 0.009137 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.451603 B = 3063.727315 C = 4138.404973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.390 6.390 3 C 0.306 3.694 4 O -0.380 6.380 5 C 0.023 3.977 6 C -0.220 4.220 7 C -0.018 4.018 8 C -0.255 4.255 9 C -0.055 4.055 10 C -0.224 4.224 11 C 0.231 3.769 12 N -0.556 5.556 13 C -0.301 4.301 14 H 0.103 0.897 15 C 0.020 3.980 16 N -0.894 5.894 17 Si 0.932 3.068 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 H 0.046 0.954 22 H 0.041 0.959 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.040 0.960 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.398 0.602 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 -6.539 0.593 7.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.310 6.310 3 C 0.212 3.788 4 O -0.300 6.300 5 C -0.073 4.073 6 C -0.227 4.227 7 C -0.037 4.037 8 C -0.277 4.277 9 C -0.074 4.074 10 C -0.248 4.248 11 C 0.109 3.891 12 N -0.158 5.158 13 C -0.431 4.431 14 H 0.120 0.880 15 C -0.183 4.183 16 N -0.532 5.532 17 Si 0.759 3.241 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.197 1.197 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.129 0.871 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.233 0.767 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.364 -6.165 0.695 6.639 hybrid contribution -0.628 1.124 -0.081 1.290 sum -2.992 -5.041 0.614 5.894 Atomic orbital electron populations 1.23021 0.81991 1.02648 1.00297 1.87970 1.18904 1.30239 1.93896 1.21520 0.93214 0.81570 0.82545 1.88233 1.29659 1.82057 1.30092 1.22913 0.87124 0.98351 0.98954 1.18210 0.96246 0.93392 1.14871 1.20378 0.93382 0.95829 0.94141 1.20350 0.97431 0.97094 1.12870 1.20682 0.97707 0.92483 0.96535 1.20390 0.95923 0.97604 1.10839 1.17532 0.92212 0.84873 0.94517 1.41035 1.17483 1.02202 1.55096 1.19715 1.02036 0.83610 1.37742 0.87951 1.25285 0.96052 0.99621 0.97361 1.69671 1.13303 1.27272 1.42933 0.85883 0.78926 0.80143 0.79173 1.19774 1.20772 1.19717 0.93516 0.94021 0.89867 0.93141 0.94166 0.90029 0.93848 0.87063 0.88214 0.87953 0.86502 0.76664 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.68 101.05 1.08 1.31 16 2 O -0.39 -7.16 9.17 -59.04 -0.54 -7.70 16 3 C 0.31 6.27 2.23 36.01 0.08 6.35 16 4 O -0.38 -7.98 10.48 -59.04 -0.62 -8.60 16 5 C 0.02 0.38 9.76 101.05 0.99 1.36 16 6 C -0.22 -4.91 5.51 -104.38 -0.57 -5.48 16 7 C -0.02 -0.38 9.36 -39.62 -0.37 -0.75 16 8 C -0.26 -4.92 10.04 -39.51 -0.40 -5.31 16 9 C -0.05 -1.07 10.04 -39.62 -0.40 -1.46 16 10 C -0.22 -4.97 9.30 -39.34 -0.37 -5.34 16 11 C 0.23 5.51 6.60 -83.84 -0.55 4.96 16 12 N -0.56 -14.21 5.36 -9.60 -0.05 -14.26 16 13 C -0.30 -7.87 9.56 -15.10 -0.14 -8.02 16 14 H 0.10 2.55 5.68 -52.49 -0.30 2.26 16 15 C 0.02 0.51 5.50 -17.45 -0.10 0.41 16 16 N -0.89 -23.94 13.05 55.49 0.72 -23.21 16 17 Si 0.93 19.98 29.55 -169.99 -5.02 14.95 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H 0.05 0.60 4.80 -51.93 -0.25 0.35 16 22 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.05 1.05 6.79 -51.93 -0.35 0.70 16 25 H 0.04 0.57 6.27 -51.93 -0.33 0.24 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.04 0.70 7.80 -51.93 -0.41 0.29 16 28 H 0.11 2.12 7.13 -52.49 -0.37 1.75 16 29 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 31 H 0.12 2.55 5.96 -52.48 -0.31 2.24 16 32 H 0.40 10.34 6.15 -40.82 -0.25 10.09 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 276.96 15.07 4.17 4.17 Total: -1.00 -28.52 276.96 -5.91 -34.43 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -3.82 Total: 12.18 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.75 Total: -11.96 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.67 Total: -37.47 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -1.16 Total: -16.30 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.52 -5.91 -34.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.897 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds