Wall clock time and date at job start Sun Mar 29 2020 21:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00023 * 2 1 4 4 O 1.42899 * 109.47507 * 85.76051 * 3 2 1 5 5 C 1.42903 * 114.00314 * 286.12617 * 4 3 2 6 6 C 1.50703 * 109.47212 * 205.76284 * 3 2 1 7 7 C 1.38068 * 120.04369 * 345.25151 * 6 3 2 8 8 C 1.38308 * 120.09086 * 180.27949 * 7 6 3 9 9 C 1.38357 * 120.17612 * 359.74217 * 8 7 6 10 10 C 1.38022 * 120.08963 * 359.97438 * 9 8 7 11 11 C 1.39059 * 120.04487 * 165.00019 * 6 3 2 12 12 N 1.39300 * 120.09060 * 359.97438 * 11 6 3 13 13 C 1.36846 * 119.99573 * 179.72188 * 12 11 6 14 14 H 1.07992 * 120.00675 * 0.02562 * 13 12 11 15 15 C 1.38804 * 119.99477 * 179.72687 * 13 12 11 16 16 N 1.31590 * 119.99849 * 0.27766 * 15 13 12 17 17 Si 1.86796 * 119.99813 * 180.27682 * 15 13 12 18 18 H 1.48508 * 109.47279 * 60.00117 * 17 15 13 19 19 H 1.48500 * 109.47080 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47363 * 300.00125 * 17 15 13 21 21 H 1.09004 * 109.47633 * 306.53870 * 1 2 3 22 22 H 1.09005 * 109.47007 * 66.53896 * 1 2 3 23 23 H 1.09001 * 109.47197 * 186.53769 * 1 2 3 24 24 H 1.09002 * 109.47186 * 325.76357 * 3 2 1 25 25 H 1.09000 * 109.47106 * 76.31381 * 5 4 3 26 26 H 1.08995 * 109.47273 * 196.31963 * 5 4 3 27 27 H 1.09006 * 109.46307 * 316.31310 * 5 4 3 28 28 H 1.08000 * 119.95437 * 0.02562 * 7 6 3 29 29 H 1.08003 * 119.91332 * 179.76535 * 8 7 6 30 30 H 1.08003 * 119.95356 * 179.97438 * 9 8 7 31 31 H 1.08007 * 120.04201 * 180.02562 * 10 9 8 32 32 H 0.96994 * 120.00064 * 359.72629 * 12 11 6 33 33 H 0.97000 * 119.99725 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.1130 1.7811 1.3436 5 6 0.8651 2.1747 1.9179 6 6 3.3835 1.2439 -0.6176 7 6 4.0080 0.0252 -0.7943 8 6 5.2707 -0.0319 -1.3556 9 6 5.9110 1.1304 -1.7472 10 6 5.2911 2.3521 -1.5793 11 6 4.0212 2.4139 -1.0150 12 7 3.3922 3.6450 -0.8437 13 6 4.0240 4.7957 -1.2303 14 1 5.0099 4.7495 -1.6685 15 6 3.3948 6.0219 -1.0649 16 7 2.1933 6.0781 -0.5313 17 14 4.2539 7.5920 -1.5996 18 1 4.5395 7.5288 -3.0556 19 1 3.3768 8.7567 -1.3178 20 1 5.5281 7.7387 -0.8513 21 1 -0.3634 0.6118 0.8257 22 1 -0.3633 0.4092 -0.9428 23 1 -0.3634 -1.0210 0.1170 24 1 1.3818 1.9829 -0.5782 25 1 0.2973 1.2870 2.1967 26 1 1.0485 2.7819 2.8043 27 1 0.2976 2.7555 1.1907 28 1 3.5115 -0.8843 -0.4900 29 1 5.7581 -0.9864 -1.4891 30 1 6.8972 1.0816 -2.1848 31 1 5.7915 3.2589 -1.8856 32 1 2.5066 3.6865 -0.4505 33 1 1.7538 6.9351 -0.4154 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:23 Heat of formation + Delta-G solvation = -78.037372 kcal Electronic energy + Delta-G solvation = -17110.286782 eV Core-core repulsion = 14328.585864 eV Total energy + Delta-G solvation = -2781.700918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85640 -39.30128 -37.05923 -36.65465 -33.75934 -32.42799 -29.84347 -28.70624 -26.99097 -26.47059 -25.73515 -22.65699 -21.97979 -19.52097 -18.49367 -18.24876 -18.12516 -17.08900 -16.35593 -16.04582 -15.48649 -15.38659 -14.79408 -14.68835 -14.56690 -14.38777 -14.07629 -13.53370 -13.44303 -13.01827 -12.86550 -12.52946 -12.33866 -12.13552 -11.90182 -11.78968 -11.41891 -11.03359 -10.80202 -10.56684 -9.55059 -8.50272 -8.45986 -5.71330 0.68846 0.98345 1.41059 1.51100 1.51732 2.28459 2.54831 2.84284 3.06707 3.43854 3.50036 3.73116 4.09073 4.24013 4.32223 4.35910 4.44009 4.48146 4.52797 4.67526 4.82316 4.86643 4.99043 5.17430 5.33717 5.45474 5.70598 5.77804 5.89341 6.00772 6.11696 6.17784 6.47349 6.83035 7.50387 7.64534 8.72630 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021329 B = 0.009137 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.451603 B = 3063.727315 C = 4138.404973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.400 6.400 3 C 0.314 3.686 4 O -0.409 6.409 5 C 0.019 3.981 6 C -0.234 4.234 7 C -0.028 4.028 8 C -0.237 4.237 9 C -0.051 4.051 10 C -0.244 4.244 11 C 0.210 3.790 12 N -0.583 5.583 13 C -0.320 4.320 14 H 0.105 0.895 15 C -0.031 4.031 16 N -0.932 5.932 17 Si 0.998 3.002 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.267 1.267 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.114 0.886 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.127 0.873 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.113 0.887 32 H 0.389 0.611 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 -8.174 0.286 8.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.321 6.321 3 C 0.219 3.781 4 O -0.330 6.330 5 C -0.077 4.077 6 C -0.241 4.241 7 C -0.047 4.047 8 C -0.259 4.259 9 C -0.069 4.069 10 C -0.268 4.268 11 C 0.092 3.908 12 N -0.188 5.188 13 C -0.450 4.450 14 H 0.123 0.877 15 C -0.230 4.230 16 N -0.572 5.572 17 Si 0.821 3.179 18 H -0.190 1.190 19 H -0.206 1.206 20 H -0.192 1.192 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.132 0.868 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.145 0.855 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.131 0.869 32 H 0.223 0.777 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.489 -7.861 0.376 8.010 hybrid contribution -0.867 1.306 0.026 1.568 sum -2.357 -6.556 0.402 6.978 Atomic orbital electron populations 1.23321 0.79631 1.04890 1.00986 1.87920 1.21448 1.28762 1.93945 1.21222 0.92390 0.82222 0.82260 1.88160 1.32084 1.82488 1.30250 1.23106 0.85967 0.99703 0.98906 1.18633 0.97285 0.93650 1.14551 1.20695 0.94137 0.95671 0.94180 1.20864 0.96573 0.98619 1.09839 1.21098 0.99064 0.91355 0.95427 1.20620 0.95735 0.98900 1.11503 1.18007 0.93026 0.85054 0.94733 1.40987 1.17580 1.02623 1.57620 1.20005 1.02388 0.84436 1.38137 0.87715 1.26150 0.96759 1.02378 0.97665 1.69786 1.14733 1.27677 1.44977 0.84891 0.77796 0.76243 0.78930 1.19044 1.20625 1.19241 0.92647 0.93601 0.86804 0.94444 0.91426 0.89223 0.94088 0.85503 0.84438 0.84184 0.86932 0.77693 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 10.68 113.37 1.21 1.40 16 2 O -0.40 -14.19 9.17 -126.21 -1.16 -15.34 16 3 C 0.31 12.93 2.23 71.24 0.16 13.09 16 4 O -0.41 -17.32 10.48 -126.21 -1.32 -18.64 16 5 C 0.02 0.61 9.76 113.37 1.11 1.72 16 6 C -0.23 -10.41 5.51 -19.71 -0.11 -10.52 16 7 C -0.03 -1.09 9.36 22.25 0.21 -0.88 16 8 C -0.24 -8.27 10.04 22.31 0.22 -8.04 16 9 C -0.05 -1.83 10.04 22.25 0.22 -1.60 16 10 C -0.24 -10.70 9.30 22.43 0.21 -10.49 16 11 C 0.21 10.17 6.60 38.36 0.25 10.42 16 12 N -0.58 -30.95 5.36 -184.29 -0.99 -31.94 16 13 C -0.32 -17.28 9.56 84.05 0.80 -16.48 16 14 H 0.11 5.38 5.68 -2.91 -0.02 5.36 16 15 C -0.03 -1.66 5.50 84.86 0.47 -1.19 16 16 N -0.93 -51.74 13.05 21.65 0.28 -51.46 16 17 Si 1.00 41.73 29.55 68.60 2.03 43.76 16 18 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 19 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H 0.06 1.33 4.80 -2.39 -0.01 1.31 16 22 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.04 1.63 6.79 -2.39 -0.02 1.62 16 25 H 0.07 1.80 6.27 -2.39 -0.01 1.79 16 26 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.04 1.34 7.80 -2.38 -0.02 1.32 16 28 H 0.13 4.50 7.13 -2.91 -0.02 4.48 16 29 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 30 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 31 H 0.11 4.95 5.96 -2.91 -0.02 4.93 16 32 H 0.39 21.30 6.15 -92.71 -0.57 20.73 16 33 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -62.38 276.96 4.16 -58.23 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: 0.56 Total: 37.97 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 4.76 Total: -22.58 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -0.70 Total: -83.40 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -2.48 Total: -33.98 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -62.38 4.16 -58.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.809 kcal (2) G-P(sol) polarization free energy of solvation -62.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds