Wall clock time and date at job start Sun Mar 29 2020 22:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35565 * 125.82721 * 2 1 4 4 N 1.35402 * 107.15899 * 179.73773 * 3 2 1 5 5 H 0.97004 * 126.43424 * 180.02562 * 4 3 2 6 6 C 1.36662 * 107.12101 * 359.97438 * 4 3 2 7 7 C 1.47411 * 125.85940 * 179.97438 * 6 4 3 8 8 O 1.21606 * 119.99972 * 359.97438 * 7 6 4 9 9 N 1.34783 * 119.99966 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99869 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46550 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46631 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46889 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00111 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00005 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99753 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99982 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47221 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46685 * 120.00379 * 17 15 13 20 20 H 1.48504 * 109.47187 * 240.00078 * 17 15 13 21 21 N 1.31607 * 108.27744 * 0.02562 * 6 4 3 22 22 H 1.08996 * 109.47165 * 89.99826 * 1 2 3 23 23 H 1.08996 * 109.47622 * 210.00574 * 1 2 3 24 24 H 1.09002 * 109.47052 * 330.00592 * 1 2 3 25 25 H 1.08001 * 126.41501 * 359.71413 * 3 2 1 26 26 H 0.97000 * 119.99471 * 359.97438 * 9 7 6 27 27 H 1.08996 * 109.46927 * 299.99852 * 10 9 7 28 28 H 1.09002 * 109.46992 * 60.00292 * 10 9 7 29 29 H 1.09004 * 109.47247 * 299.99296 * 11 10 9 30 30 H 1.08993 * 109.47372 * 60.00175 * 11 10 9 31 31 H 1.09008 * 109.46852 * 299.99403 * 12 11 10 32 32 H 1.08993 * 109.47469 * 59.99782 * 12 11 10 33 33 H 0.96998 * 119.99728 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6657 0.0059 5 1 4.3789 1.2207 0.0077 6 6 3.5464 -0.7004 0.0100 7 6 4.7173 -1.5958 0.0165 8 8 5.8401 -1.1286 0.0180 9 7 4.5436 -2.9324 0.0195 10 6 5.7073 -3.8223 0.0253 11 6 5.2360 -5.2779 0.0285 12 6 6.4514 -6.2074 0.0352 13 6 5.9872 -7.6411 0.0377 14 1 4.9311 -7.8669 0.0352 15 6 6.9109 -8.6648 0.0431 16 7 8.1971 -8.3899 0.0467 17 14 6.3356 -10.4420 0.0469 18 1 4.8511 -10.4817 0.0425 19 1 6.8525 -11.1320 -1.1622 20 1 6.8460 -11.1249 1.2628 21 7 2.2860 -1.0792 0.0061 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5137 25 1 1.9711 2.1277 -0.0043 26 1 3.6480 -3.3050 0.0179 27 1 6.3106 -3.6373 -0.8634 28 1 6.3054 -3.6325 0.9166 29 1 4.6329 -5.4627 0.9175 30 1 4.6377 -5.4681 -0.8625 31 1 7.0548 -6.0228 -0.8536 32 1 7.0494 -6.0172 0.9264 33 1 8.8469 -9.1100 0.0509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191106593.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:33 Heat of formation + Delta-G solvation = -2.673225 kcal Electronic energy + Delta-G solvation = -15690.514022 eV Core-core repulsion = 12944.373890 eV Total energy + Delta-G solvation = -2746.140132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.43805 -39.21357 -35.51620 -33.58498 -33.23155 -31.78882 -30.82608 -27.66488 -26.50853 -24.02405 -22.46187 -20.78721 -20.43931 -20.24591 -18.51976 -16.51780 -16.37291 -15.95682 -15.49839 -14.96106 -14.44876 -14.29838 -13.79110 -13.76365 -13.25189 -12.98151 -12.47024 -12.28601 -11.83484 -11.75160 -10.90823 -10.74834 -10.57826 -10.46768 -10.32662 -10.28567 -9.85935 -9.43790 -9.09910 -8.95360 -8.57588 -8.35888 -6.00512 -4.03219 1.23363 2.38183 2.50451 3.31844 3.36036 3.39286 3.43221 3.50648 4.16422 4.46362 4.71964 4.86937 4.95883 5.35565 5.46805 5.48847 5.64322 5.72462 5.76122 5.76679 6.14714 6.36703 6.39033 6.60174 6.80854 6.91289 7.00188 7.44876 7.65233 7.75599 7.77138 7.98473 8.19840 8.39995 9.03687 9.61044 11.10877 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045981 B = 0.003777 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.798604 B = 7412.032995 C = 7989.780181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.003 4.003 3 C -0.030 4.030 4 N -0.525 5.525 5 H 0.430 0.570 6 C 0.155 3.845 7 C 0.598 3.402 8 O -0.547 6.547 9 N -0.696 5.696 10 C 0.116 3.884 11 C -0.122 4.122 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.441 5.441 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.185 0.815 26 H 0.411 0.589 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.019 0.981 32 H 0.020 0.980 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.219 19.095 -0.080 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.137 4.137 3 C -0.168 4.168 4 N -0.127 5.127 5 H 0.270 0.730 6 C -0.107 4.107 7 C 0.381 3.619 8 O -0.424 6.424 9 N -0.346 5.346 10 C -0.006 4.006 11 C -0.160 4.160 12 C -0.014 4.014 13 C -0.559 4.559 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 N -0.165 5.165 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.202 0.798 26 H 0.247 0.753 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.455 18.453 -0.075 22.263 hybrid contribution 0.031 0.028 -0.009 0.042 sum -12.425 18.481 -0.085 22.269 Atomic orbital electron populations 1.20058 0.87053 1.02962 1.02481 1.20927 0.97038 0.87999 1.07699 1.22703 0.83075 1.00979 1.10092 1.42902 1.09152 1.07633 1.52976 0.73044 1.22807 0.93897 0.82334 1.11669 1.16521 0.85345 0.82410 0.77596 1.90838 1.23711 1.76154 1.51716 1.45926 1.12084 1.04539 1.72054 1.21789 0.86631 0.89806 1.02356 1.21915 1.01578 0.91209 1.01288 1.19041 0.91689 0.92977 0.97690 1.21253 0.92934 0.91058 1.50679 0.92496 1.25034 0.94906 0.99286 0.95292 1.69979 1.00387 1.32238 1.50763 0.86520 0.78885 0.84932 0.77565 1.19701 1.21025 1.21020 1.70129 0.99214 1.30933 1.16209 0.91190 0.90821 0.91190 0.79793 0.75302 0.91293 0.91298 0.92447 0.92444 0.96218 0.96213 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.01 0.38 -0.12 16 2 C 0.00 -0.03 7.07 -83.00 -0.59 -0.61 16 3 C -0.03 -0.25 11.91 -16.93 -0.20 -0.45 16 4 N -0.53 -5.39 6.14 -10.78 -0.07 -5.46 16 5 H 0.43 3.48 8.96 -40.82 -0.37 3.11 16 6 C 0.15 2.13 7.95 -154.53 -1.23 0.90 16 7 C 0.60 9.61 7.81 -12.52 -0.10 9.51 16 8 O -0.55 -10.08 17.09 5.27 0.09 -9.99 16 9 N -0.70 -10.98 5.55 -61.39 -0.34 -11.32 16 10 C 0.12 2.08 5.67 -4.04 -0.02 2.05 16 11 C -0.12 -2.42 5.27 -26.73 -0.14 -2.57 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 17 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 N -0.44 -6.00 10.89 -7.50 -0.08 -6.08 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.19 0.77 8.06 -52.49 -0.42 0.35 16 26 H 0.41 5.92 8.15 -40.82 -0.33 5.59 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 293.99 15.07 4.43 4.43 Total: -1.00 -33.34 293.99 -7.17 -40.51 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.47 Total: 1.75 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.45 Total: -4.26 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.25 Total: -49.04 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.34 -7.17 -40.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191106593.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.840 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds