Wall clock time and date at job start Sun Mar 29 2020 22:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35565 * 125.82721 * 2 1 4 4 N 1.35402 * 107.15899 * 179.73773 * 3 2 1 5 5 H 0.97004 * 126.43424 * 180.02562 * 4 3 2 6 6 C 1.36662 * 107.12101 * 359.97438 * 4 3 2 7 7 C 1.47411 * 125.85940 * 179.97438 * 6 4 3 8 8 O 1.21606 * 119.99972 * 359.97438 * 7 6 4 9 9 N 1.34783 * 119.99966 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99869 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46550 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46631 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46889 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00111 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00005 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99753 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99982 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47221 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46685 * 120.00379 * 17 15 13 20 20 H 1.48504 * 109.47187 * 240.00078 * 17 15 13 21 21 N 1.31607 * 108.27744 * 0.02562 * 6 4 3 22 22 H 1.08996 * 109.47165 * 89.99826 * 1 2 3 23 23 H 1.08996 * 109.47622 * 210.00574 * 1 2 3 24 24 H 1.09002 * 109.47052 * 330.00592 * 1 2 3 25 25 H 1.08001 * 126.41501 * 359.71413 * 3 2 1 26 26 H 0.97000 * 119.99471 * 359.97438 * 9 7 6 27 27 H 1.08996 * 109.46927 * 299.99852 * 10 9 7 28 28 H 1.09002 * 109.46992 * 60.00292 * 10 9 7 29 29 H 1.09004 * 109.47247 * 299.99296 * 11 10 9 30 30 H 1.08993 * 109.47372 * 60.00175 * 11 10 9 31 31 H 1.09008 * 109.46852 * 299.99403 * 12 11 10 32 32 H 1.08993 * 109.47469 * 59.99782 * 12 11 10 33 33 H 0.96998 * 119.99728 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6657 0.0059 5 1 4.3789 1.2207 0.0077 6 6 3.5464 -0.7004 0.0100 7 6 4.7173 -1.5958 0.0165 8 8 5.8401 -1.1286 0.0180 9 7 4.5436 -2.9324 0.0195 10 6 5.7073 -3.8223 0.0253 11 6 5.2360 -5.2779 0.0285 12 6 6.4514 -6.2074 0.0352 13 6 5.9872 -7.6411 0.0377 14 1 4.9311 -7.8669 0.0352 15 6 6.9109 -8.6648 0.0431 16 7 8.1971 -8.3899 0.0467 17 14 6.3356 -10.4420 0.0469 18 1 4.8511 -10.4817 0.0425 19 1 6.8525 -11.1320 -1.1622 20 1 6.8460 -11.1249 1.2628 21 7 2.2860 -1.0792 0.0061 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5137 25 1 1.9711 2.1277 -0.0043 26 1 3.6480 -3.3050 0.0179 27 1 6.3106 -3.6373 -0.8634 28 1 6.3054 -3.6325 0.9166 29 1 4.6329 -5.4627 0.9175 30 1 4.6377 -5.4681 -0.8625 31 1 7.0548 -6.0228 -0.8536 32 1 7.0494 -6.0172 0.9264 33 1 8.8469 -9.1100 0.0509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191106593.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:33 Heat of formation + Delta-G solvation = -26.719478 kcal Electronic energy + Delta-G solvation = -15691.556746 eV Core-core repulsion = 12944.373890 eV Total energy + Delta-G solvation = -2747.182856 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.28818 -40.49530 -37.06732 -35.29273 -34.22896 -33.27134 -32.03219 -29.00422 -27.75874 -25.50339 -23.88158 -22.35410 -21.50205 -21.24463 -19.60058 -18.51118 -17.52665 -17.07588 -16.88957 -16.41857 -16.22353 -15.16743 -15.15916 -14.95717 -14.27276 -13.98928 -13.76303 -13.64949 -13.47242 -13.02540 -12.77847 -12.57477 -12.36335 -11.77474 -11.70091 -11.37064 -11.30179 -11.19914 -11.14376 -10.55352 -10.28672 -9.39856 -8.19293 -6.30326 0.27050 1.42368 1.42410 1.52696 1.53209 1.56468 2.27717 2.41807 2.52747 3.14610 3.18220 3.92347 4.10652 4.13370 4.18443 4.38922 4.53022 4.84882 4.91229 4.91864 4.98488 5.00755 5.13642 5.15842 5.29956 5.52100 5.66687 5.70617 5.84510 6.14732 6.22757 6.31746 6.79163 6.86793 6.99696 7.39103 8.93021 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045981 B = 0.003777 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.798604 B = 7412.032995 C = 7989.780181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.030 4.030 3 C 0.006 3.994 4 N -0.516 5.516 5 H 0.439 0.561 6 C 0.113 3.887 7 C 0.599 3.401 8 O -0.579 6.579 9 N -0.692 5.692 10 C 0.130 3.870 11 C -0.104 4.104 12 C 0.025 3.975 13 C -0.541 4.541 14 H 0.065 0.935 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.279 1.279 21 N -0.460 5.460 22 H 0.077 0.923 23 H 0.062 0.938 24 H 0.098 0.902 25 H 0.235 0.765 26 H 0.419 0.581 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.067 0.933 31 H -0.005 1.005 32 H -0.005 1.005 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.611 20.217 -0.080 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.165 4.165 3 C -0.135 4.135 4 N -0.118 5.118 5 H 0.281 0.719 6 C -0.146 4.146 7 C 0.385 3.615 8 O -0.459 6.459 9 N -0.343 5.343 10 C 0.007 3.993 11 C -0.142 4.142 12 C -0.013 4.013 13 C -0.579 4.579 14 H 0.083 0.917 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.183 1.183 19 H -0.205 1.205 20 H -0.205 1.205 21 N -0.184 5.184 22 H 0.096 0.904 23 H 0.081 0.919 24 H 0.117 0.883 25 H 0.252 0.748 26 H 0.256 0.744 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.858 19.576 -0.076 24.576 hybrid contribution 0.704 -0.188 -0.010 0.728 sum -14.154 19.388 -0.086 24.005 Atomic orbital electron populations 1.20152 0.84928 1.03893 1.03251 1.21623 0.98594 0.87903 1.08367 1.23547 0.81607 1.02637 1.05667 1.42979 1.10450 1.06565 1.51835 0.71937 1.22172 0.93091 0.83414 1.15944 1.16788 0.85849 0.82419 0.76478 1.90807 1.25197 1.76635 1.53240 1.45709 1.11613 1.04586 1.72355 1.21405 0.87184 0.89143 1.01567 1.21622 0.99202 0.91167 1.02176 1.18941 0.93296 0.93728 0.95343 1.21711 0.93450 0.92357 1.50381 0.91698 1.26010 0.94945 1.04323 0.94773 1.70114 1.01746 1.33858 1.51757 0.85364 0.78973 0.78827 0.77659 1.18344 1.20513 1.20503 1.70057 0.99487 1.32815 1.16090 0.90448 0.91904 0.88289 0.74835 0.74427 0.92183 0.92186 0.91473 0.91472 0.98623 0.98611 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.42 71.24 0.74 -0.02 16 2 C -0.03 -0.57 7.07 41.75 0.30 -0.27 16 3 C 0.01 0.07 11.91 83.52 0.99 1.07 16 4 N -0.52 -9.55 6.14 -188.02 -1.16 -10.70 16 5 H 0.44 6.30 8.96 -92.71 -0.83 5.47 16 6 C 0.11 3.03 7.95 136.28 1.08 4.12 16 7 C 0.60 19.50 7.81 86.66 0.68 20.18 16 8 O -0.58 -21.83 17.09 -4.05 -0.07 -21.90 16 9 N -0.69 -22.10 5.55 -466.38 -2.59 -24.69 16 10 C 0.13 4.77 5.67 86.38 0.49 5.26 16 11 C -0.10 -4.17 5.27 30.60 0.16 -4.00 16 12 C 0.02 1.29 4.97 29.85 0.15 1.44 16 13 C -0.54 -30.65 9.11 25.60 0.23 -30.41 16 14 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 15 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 16 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 17 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 N -0.46 -12.02 10.89 -177.64 -1.94 -13.95 16 22 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.24 0.57 8.06 -2.91 -0.02 0.55 16 26 H 0.42 12.04 8.15 -92.71 -0.76 11.28 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 30 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 32 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -73.43 293.99 1.39 -72.04 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -0.46 Total: 12.24 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 5.29 Total: -2.34 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -5.40 Total: -106.39 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.07 Total: -21.90 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -73.43 1.39 -72.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191106593.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.321 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds