Wall clock time and date at job start Sun Mar 29 2020 21:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99597 * 2 1 4 4 H 1.48500 * 109.47457 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47394 * 300.00009 * 3 2 1 6 6 H 1.48505 * 109.47353 * 59.99712 * 3 2 1 7 7 C 1.37871 * 120.00666 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00182 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99700 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.46971 * 179.97438 * 9 7 2 11 11 C 1.47967 * 110.99861 * 170.00391 * 10 9 7 12 12 C 1.53943 * 86.18101 * 222.41885 * 11 10 9 13 13 O 1.42899 * 113.73345 * 138.07683 * 12 11 10 14 14 C 1.42903 * 113.99629 * 151.90181 * 13 12 11 15 15 C 1.50701 * 109.46878 * 179.97438 * 14 13 12 16 16 C 1.34672 * 126.59173 * 359.68943 * 15 14 13 17 17 N 1.34120 * 108.01838 * 179.87415 * 16 15 14 18 18 C 1.30503 * 109.26111 * 0.39222 * 17 16 15 19 19 N 1.35041 * 108.69336 * 359.76040 * 18 17 16 20 20 H 0.97008 * 126.39242 * 179.97438 * 19 18 17 21 21 C 1.48190 * 111.07153 * 70.57090 * 10 9 7 22 22 H 0.97001 * 120.00894 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47315 * 60.00675 * 9 7 2 24 24 H 1.08994 * 109.47298 * 300.00311 * 9 7 2 25 25 H 1.09001 * 113.76046 * 108.10457 * 11 10 9 26 26 H 1.08995 * 113.85772 * 336.74674 * 11 10 9 27 27 H 1.09005 * 113.73230 * 269.25891 * 12 11 10 28 28 H 1.09002 * 109.47382 * 59.99956 * 14 13 12 29 29 H 1.09001 * 109.46938 * 299.99942 * 14 13 12 30 30 H 1.07998 * 125.98944 * 0.02562 * 16 15 14 31 31 H 1.07994 * 125.65114 * 179.73026 * 18 17 16 32 32 H 1.08999 * 113.75720 * 23.23648 * 21 10 9 33 33 H 1.08996 * 113.82451 * 251.81196 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3467 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2059 -3.6155 0.0015 11 6 1.5167 -4.9025 0.2424 12 6 2.6940 -5.2405 1.1748 13 8 2.2990 -5.8734 2.3936 14 6 3.2948 -6.7333 2.9512 15 6 2.7744 -7.3432 4.2273 16 6 1.5682 -7.1282 4.7862 17 7 1.4952 -7.8582 5.9090 18 6 2.6134 -8.5110 6.0715 19 7 3.4391 -8.2178 5.0440 20 1 4.3360 -8.5623 4.9099 21 6 2.9027 -3.7209 1.3050 22 1 -0.4851 0.8400 -0.0004 23 1 0.6242 -2.5575 -0.8881 24 1 0.6249 -2.5563 0.8919 25 1 1.4575 -5.5408 -0.6393 26 1 0.5623 -4.8016 0.7590 27 1 3.5153 -5.7550 0.6757 28 1 4.1946 -6.1565 3.1652 29 1 3.5312 -7.5246 2.2398 30 1 0.7944 -6.4831 4.3972 31 1 2.8409 -9.1753 6.8921 32 1 2.3549 -3.2718 2.1334 33 1 3.9488 -3.4168 1.2709 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223008196.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:27 Heat of formation + Delta-G solvation = 26.934001 kcal Electronic energy + Delta-G solvation = -16115.230331 eV Core-core repulsion = 13370.374065 eV Total energy + Delta-G solvation = -2744.856266 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.95383 -40.84231 -37.91953 -34.99270 -33.57496 -31.84039 -30.64406 -27.34095 -27.02769 -26.32452 -23.45822 -22.50804 -21.76026 -20.85270 -18.97052 -18.64522 -17.90755 -16.93757 -16.75433 -16.25999 -15.69669 -15.53540 -15.04467 -14.85226 -14.50147 -14.33385 -13.91473 -13.68253 -13.41591 -12.94344 -12.69713 -12.65990 -12.32284 -12.15296 -11.47515 -11.18240 -10.99878 -10.98678 -10.67165 -10.55634 -9.64399 -9.31976 -8.24842 -6.36161 1.06357 1.39502 1.40183 1.53999 1.90556 2.19440 2.38187 2.87574 3.08449 3.30720 3.53695 3.75457 3.98344 4.15191 4.25692 4.34640 4.45882 4.55448 4.60614 4.67225 4.74083 4.79626 4.91350 4.98419 5.10197 5.20400 5.50124 5.73570 5.75203 6.08669 6.24663 6.35967 6.59449 6.79085 7.12503 7.34039 8.87464 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.041065 B = 0.004296 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.681945 B = 6515.429368 C = 6680.252361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.178 3.822 10 N -0.488 5.488 11 C -0.004 4.004 12 C 0.087 3.913 13 O -0.386 6.386 14 C 0.139 3.861 15 C -0.029 4.029 16 C -0.038 4.038 17 N -0.546 5.546 18 C 0.198 3.802 19 N -0.549 5.549 20 H 0.440 0.560 21 C -0.003 4.003 22 H 0.266 0.734 23 H 0.004 0.996 24 H -0.030 1.030 25 H 0.108 0.892 26 H 0.053 0.947 27 H 0.130 0.870 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.254 0.746 32 H 0.047 0.953 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.567 -18.034 8.271 22.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.050 3.950 10 N -0.212 5.212 11 C -0.133 4.133 12 C 0.029 3.971 13 O -0.304 6.304 14 C 0.061 3.939 15 C -0.145 4.145 16 C -0.185 4.185 17 N -0.266 5.266 18 C -0.086 4.086 19 N -0.156 5.156 20 H 0.282 0.718 21 C -0.132 4.132 22 H 0.074 0.926 23 H 0.022 0.978 24 H -0.012 1.012 25 H 0.126 0.874 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.168 0.832 31 H 0.269 0.731 32 H 0.066 0.934 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.884 -17.792 8.270 22.437 hybrid contribution 0.299 1.048 0.008 1.090 sum 11.182 -16.744 8.278 21.770 Atomic orbital electron populations 1.70095 1.07874 1.28019 1.51505 1.25982 0.95790 1.03493 0.94534 0.85275 0.78968 0.78197 0.77821 1.18503 1.20154 1.20375 1.21445 0.93620 0.91111 1.50559 0.91863 1.19847 0.91023 0.90281 0.93813 1.68459 1.20839 1.02017 1.29874 1.24243 0.96737 0.93225 0.99106 1.24129 0.97712 0.91158 0.84109 1.87943 1.41142 1.61859 1.39462 1.20616 0.90401 0.93158 0.89718 1.20897 0.95434 1.00523 0.97685 1.22074 0.98047 1.03769 0.94618 1.70246 1.24858 1.12287 1.19167 1.25840 0.85973 1.02210 0.94589 1.42963 1.17591 1.35625 1.19407 0.71847 1.24291 1.00796 0.96342 0.91757 0.92562 0.97818 1.01220 0.87380 0.92857 0.85229 0.90231 0.89226 0.83166 0.73074 0.93417 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.29 21.44 0.28 -57.46 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.53 -30.89 8.84 25.60 0.23 -30.66 16 8 H 0.06 3.59 7.80 -2.91 -0.02 3.57 16 9 C 0.18 9.86 4.58 85.56 0.39 10.25 16 10 N -0.49 -21.50 6.25 -915.50 -5.72 -27.22 16 11 C 0.00 -0.15 7.81 86.41 0.67 0.53 16 12 C 0.09 2.53 4.48 31.24 0.14 2.67 16 13 O -0.39 -11.03 9.69 -148.98 -1.44 -12.47 16 14 C 0.14 2.69 6.41 71.24 0.46 3.15 16 15 C -0.03 -0.64 7.21 40.95 0.30 -0.34 16 16 C -0.04 -1.12 11.22 83.53 0.94 -0.18 16 17 N -0.55 -14.99 11.25 -200.32 -2.25 -17.25 16 18 C 0.20 3.26 13.04 180.26 2.35 5.61 16 19 N -0.55 -7.56 6.15 -186.50 -1.15 -8.70 16 20 H 0.44 2.11 8.96 -92.70 -0.83 1.28 16 21 C 0.00 -0.10 7.32 86.37 0.63 0.53 16 22 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 23 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 24 H -0.03 -1.81 7.70 -2.39 -0.02 -1.83 16 25 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 26 H 0.05 2.11 7.80 -2.39 -0.02 2.09 16 27 H 0.13 2.80 7.89 -2.38 -0.02 2.78 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.15 4.90 7.87 -2.91 -0.02 4.88 16 31 H 0.25 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.05 2.08 7.79 -2.39 -0.02 2.06 16 33 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -76.98 286.75 -1.41 -78.39 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.28 Total: 5.72 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 6.57 Total: -7.98 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -8.84 Total: -110.64 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -1.44 Total: -12.47 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -76.98 -1.41 -78.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223008196.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.322 kcal (2) G-P(sol) polarization free energy of solvation -76.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds