Wall clock time and date at job start Sun Mar 29 2020 21:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47112 * 2 1 4 4 C 1.53003 * 109.47244 * 239.99749 * 2 1 3 5 5 O 1.42900 * 109.47297 * 305.00188 * 4 2 1 6 6 N 1.46293 * 114.00188 * 179.97438 * 5 4 2 7 7 O 1.42894 * 109.47102 * 119.99952 * 2 1 3 8 8 C 1.35676 * 117.00025 * 274.33883 * 7 2 1 9 9 C 1.39313 * 119.81533 * 5.07678 * 8 7 2 10 10 C 1.36441 * 120.18097 * 180.27236 * 9 8 7 11 11 C 1.40834 * 119.81386 * 0.02562 * 10 9 8 12 12 C 1.41215 * 120.17396 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99647 * 207.76638 * 12 11 10 14 14 C 1.39884 * 120.00601 * 27.77016 * 12 11 10 15 15 N 1.30883 * 120.00197 * 12.83778 * 14 12 11 16 16 Si 1.86803 * 120.00319 * 192.83533 * 14 12 11 17 17 H 1.48498 * 109.47246 * 59.99793 * 16 14 12 18 18 H 1.48500 * 109.47077 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46707 * 299.99767 * 16 14 12 20 20 C 1.40824 * 119.63994 * 359.97438 * 11 10 9 21 21 C 1.36433 * 119.81436 * 359.97438 * 20 11 10 22 22 H 1.09002 * 109.47112 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47083 * 300.00096 * 1 2 3 24 24 H 1.09003 * 109.47108 * 60.00390 * 1 2 3 25 25 H 1.09005 * 109.46944 * 65.00015 * 4 2 1 26 26 H 1.08998 * 109.47145 * 184.99609 * 4 2 1 27 27 H 1.00902 * 110.99652 * 56.04611 * 6 5 4 28 28 H 1.00896 * 111.00153 * 179.97438 * 6 5 4 29 29 H 1.07996 * 119.90983 * 0.27193 * 9 8 7 30 30 H 1.08006 * 120.08932 * 180.02562 * 10 9 8 31 31 H 0.96994 * 120.00662 * 180.02562 * 15 14 12 32 32 H 1.08004 * 120.09222 * 180.02562 * 20 11 10 33 33 H 1.08001 * 119.90401 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3094 6 7 1.8934 -2.8107 -2.4723 7 8 2.0063 -0.6736 1.1667 8 6 2.1254 0.0647 2.2988 9 6 1.6890 1.3877 2.3120 10 6 1.8103 2.1387 3.4447 11 6 2.3789 1.5730 4.6023 12 6 2.5086 2.3435 5.7786 13 1 3.2952 2.1225 6.4849 14 6 1.6182 3.3929 6.0292 15 7 0.5250 3.5074 5.3188 16 14 1.9895 4.6310 7.3779 17 1 3.2748 5.3137 7.0829 18 1 0.8979 5.6357 7.4416 19 1 2.0905 3.9272 8.6816 20 6 2.8174 0.2349 4.5804 21 6 2.6880 -0.5027 3.4399 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.7516 -0.1584 -2.1370 26 1 3.1263 -0.7995 -1.2056 27 1 2.8991 -2.8824 -2.5130 28 1 1.4659 -3.7246 -2.4695 29 1 1.2536 1.8200 1.4233 30 1 1.4712 3.1641 3.4534 31 1 -0.0922 4.2352 5.4922 32 1 3.2542 -0.2064 5.4641 33 1 3.0242 -1.5289 3.4214 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225265978.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:19 Heat of formation + Delta-G solvation = -22.499826 kcal Electronic energy + Delta-G solvation = -16407.260353 eV Core-core repulsion = 13627.967724 eV Total energy + Delta-G solvation = -2779.292629 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.12622 -37.13730 -36.06956 -33.40109 -32.01155 -29.75095 -29.25903 -28.85403 -26.10148 -24.79159 -21.99576 -20.99205 -19.75579 -17.55029 -17.24046 -16.44689 -16.29241 -15.26559 -15.10622 -14.54985 -13.98604 -13.92724 -13.36580 -13.03700 -12.56176 -12.46115 -12.02832 -11.70363 -11.57460 -11.45405 -11.08862 -10.98267 -10.78419 -10.57647 -10.49009 -9.81921 -9.75593 -9.31456 -9.05606 -9.00926 -7.63888 -6.94625 -6.66912 -4.25065 2.78118 2.82226 2.97867 3.09052 3.12045 3.22947 3.97551 4.07308 4.65851 5.05807 5.10389 5.21614 5.53008 5.55474 5.66545 5.77793 5.96551 6.13265 6.19063 6.30294 6.57493 6.70468 6.74654 6.90950 7.06056 7.09395 7.30982 7.43531 7.57949 7.92126 8.02020 8.17622 8.47315 8.67500 8.92954 9.01027 10.28076 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.059930 B = 0.004943 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.097028 B = 5662.705515 C = 5966.831181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.084 0.916 4 C 0.068 3.932 5 O -0.226 6.226 6 N -0.681 5.681 7 O -0.318 6.318 8 C -0.003 4.003 9 C -0.178 4.178 10 C -0.128 4.128 11 C 0.086 3.914 12 C -0.465 4.465 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.807 5.807 16 Si 0.909 3.091 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.193 4.193 21 C -0.117 4.117 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.337 0.663 28 H 0.364 0.636 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.279 0.721 32 H 0.099 0.901 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 -4.330 -9.849 10.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.034 3.966 3 H 0.101 0.899 4 C -0.009 4.009 5 O -0.240 6.240 6 N -0.247 5.247 7 O -0.234 6.234 8 C -0.047 4.047 9 C -0.197 4.197 10 C -0.147 4.147 11 C 0.084 3.916 12 C -0.496 4.496 13 H 0.093 0.907 14 C -0.142 4.142 15 N -0.434 5.434 16 Si 0.734 3.266 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.212 4.212 21 C -0.136 4.136 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.177 0.823 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.873 -3.897 -10.183 10.939 hybrid contribution 0.535 0.155 1.116 1.248 sum 1.408 -3.743 -9.067 9.909 Atomic orbital electron populations 1.22240 0.95254 1.03243 1.02258 1.22186 0.94794 0.95719 0.83879 0.89863 1.22628 0.97591 0.83985 0.96735 1.90793 1.67235 1.26392 1.39599 1.64388 1.13253 1.21433 1.25600 1.85931 1.82892 1.37927 1.16698 1.18616 1.07809 0.91568 0.86669 1.20660 1.05962 0.93970 0.99102 1.20992 1.02721 0.99866 0.91143 1.17595 0.90639 0.90586 0.92792 1.19424 1.12935 1.12197 1.05017 0.90664 1.25844 0.93788 0.97567 0.97032 1.69799 1.07791 1.28855 1.36990 0.86355 0.78949 0.80017 0.81254 1.18994 1.20452 1.19135 1.20626 1.09560 0.94568 0.96487 1.19615 1.03391 0.98651 0.91926 0.91363 0.91470 0.92075 0.91226 0.92716 0.85353 0.82346 0.88445 0.85984 0.91039 0.88254 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 8.99 37.16 0.33 -2.41 16 2 C 0.09 1.55 2.63 -26.73 -0.07 1.48 16 3 H 0.08 1.35 6.23 -51.93 -0.32 1.02 16 4 C 0.07 0.96 6.26 37.16 0.23 1.19 16 5 O -0.23 -3.38 11.05 -18.77 -0.21 -3.59 16 6 N -0.68 -7.39 10.79 60.35 0.65 -6.74 16 7 O -0.32 -6.64 9.75 -23.58 -0.23 -6.87 16 8 C 0.00 -0.08 6.63 -38.78 -0.26 -0.34 16 9 C -0.18 -4.17 8.20 -39.83 -0.33 -4.49 16 10 C -0.13 -3.32 8.61 -39.25 -0.34 -3.66 16 11 C 0.09 2.31 5.55 -106.81 -0.59 1.72 16 12 C -0.47 -12.43 9.05 -37.84 -0.34 -12.78 16 13 H 0.08 1.92 7.88 -52.48 -0.41 1.51 16 14 C 0.07 1.86 5.22 -17.34 -0.09 1.77 16 15 N -0.81 -21.09 10.88 55.54 0.60 -20.48 16 16 Si 0.91 18.88 29.58 -169.99 -5.03 13.85 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 C -0.19 -4.80 9.74 -39.26 -0.38 -5.18 16 21 C -0.12 -2.76 9.92 -39.83 -0.40 -3.16 16 22 H 0.07 1.12 7.56 -51.93 -0.39 0.73 16 23 H 0.07 1.18 7.00 -51.93 -0.36 0.81 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.34 2.95 9.18 -39.29 -0.36 2.59 16 28 H 0.36 3.15 9.25 -39.29 -0.36 2.79 16 29 H 0.10 2.02 5.43 -52.49 -0.28 1.73 16 30 H 0.12 3.26 6.21 -52.48 -0.33 2.93 16 31 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 32 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 33 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 281.75 15.07 4.25 4.25 Total: -1.00 -29.48 281.75 -6.27 -35.75 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.08 Total: 9.69 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -2.23 Total: -25.86 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 1.26 Total: -27.22 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.44 Total: -10.46 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.48 -6.27 -35.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265978.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.248 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds