Wall clock time and date at job start Sun Mar 29 2020 21:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38204 * 119.98485 * 2 1 4 4 C 1.38463 * 119.96975 * 180.25279 * 3 2 1 5 5 F 1.35096 * 120.02132 * 179.76707 * 4 3 2 6 6 C 1.38457 * 119.94902 * 359.74817 * 4 3 2 7 7 C 1.38199 * 119.97636 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.98787 * 180.02562 * 7 6 4 9 9 C 1.38235 * 119.98726 * 179.74614 * 2 1 3 10 10 C 1.50703 * 119.97607 * 0.02562 * 9 2 1 11 11 N 1.46500 * 109.47031 * 274.83227 * 10 9 2 12 12 C 1.46506 * 119.99833 * 95.83838 * 11 10 9 13 13 C 1.36931 * 120.00081 * 276.11050 * 11 10 9 14 14 H 1.07998 * 120.00253 * 34.33650 * 13 11 10 15 15 C 1.38820 * 120.00026 * 214.33534 * 13 11 10 16 16 N 1.31617 * 120.00015 * 6.24121 * 15 13 11 17 17 Si 1.86796 * 119.99931 * 186.24240 * 15 13 11 18 18 H 1.48497 * 109.47146 * 59.99860 * 17 15 13 19 19 H 1.48497 * 109.47079 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47182 * 300.00137 * 17 15 13 21 21 H 1.08998 * 109.47369 * 275.39820 * 1 2 3 22 22 H 1.09008 * 109.47222 * 35.39402 * 1 2 3 23 23 H 1.09002 * 109.47377 * 155.39259 * 1 2 3 24 24 H 1.08000 * 120.01224 * 0.02562 * 3 2 1 25 25 H 1.08002 * 120.01329 * 180.02562 * 6 4 3 26 26 H 1.08999 * 109.46857 * 273.45316 * 8 7 6 27 27 H 1.08996 * 109.47147 * 33.45749 * 8 7 6 28 28 H 1.08992 * 109.47161 * 153.46056 * 8 7 6 29 29 H 1.08998 * 109.47300 * 154.83412 * 10 9 2 30 30 H 1.09002 * 109.47072 * 34.83064 * 10 9 2 31 31 H 1.09003 * 109.46857 * 85.26206 * 12 11 10 32 32 H 1.09000 * 109.46863 * 205.26251 * 12 11 10 33 33 H 1.08998 * 109.46714 * 325.26669 * 12 11 10 34 34 H 0.96996 * 120.00322 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1971 0.0000 4 6 3.5823 1.1967 -0.0053 5 9 4.2585 2.3662 -0.0101 6 6 4.2732 -0.0032 -0.0053 7 6 3.5804 -1.1989 -0.0006 8 6 4.3321 -2.5050 0.0000 9 6 2.1979 -1.1973 0.0053 10 6 1.4436 -2.5019 0.0105 11 7 1.0979 -2.8606 1.3882 12 6 -0.2215 -2.5182 1.9252 13 6 2.0099 -3.5110 2.1758 14 1 3.0633 -3.2967 2.0718 15 6 1.5805 -4.4458 3.1079 16 7 0.3130 -4.7975 3.1513 17 14 2.8017 -5.2044 4.3005 18 1 3.4194 -4.1342 5.1241 19 1 2.0967 -6.1654 5.1864 20 1 3.8598 -5.9164 3.5396 21 1 -0.3634 0.0967 1.0231 22 1 -0.3634 0.8378 -0.5953 23 1 -0.3634 -0.9343 -0.4279 24 1 1.6577 2.1323 0.0004 25 1 5.3533 -0.0047 -0.0090 26 1 4.5639 -2.7913 -1.0259 27 1 5.2582 -2.3910 0.5635 28 1 3.7180 -3.2775 0.4627 29 1 2.0670 -3.2839 -0.4230 30 1 0.5316 -2.3967 -0.5773 31 1 -0.9358 -3.2971 1.6582 32 1 -0.1619 -2.4364 3.0105 33 1 -0.5483 -1.5665 1.5064 34 1 0.0128 -5.4504 3.8028 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237321421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:04 Heat of formation + Delta-G solvation = -20.573454 kcal Electronic energy + Delta-G solvation = -17106.617923 eV Core-core repulsion = 14339.781617 eV Total energy + Delta-G solvation = -2766.836306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.83380 -40.65675 -37.17789 -34.61257 -33.81551 -31.91655 -29.16773 -28.29578 -27.23242 -26.61103 -23.60455 -21.82948 -21.52184 -18.72204 -17.80579 -17.54441 -16.98358 -16.54605 -16.40849 -15.57088 -15.32312 -14.65006 -14.54319 -14.16497 -14.11062 -13.91932 -13.90707 -13.56811 -13.15597 -12.82136 -12.74130 -12.49559 -12.39193 -12.08902 -11.96596 -11.79100 -11.73050 -11.34477 -10.56508 -9.55649 -9.34516 -8.53152 -7.79416 -5.37642 0.30121 0.35886 1.47052 1.48543 1.54274 2.49931 2.68211 3.31853 3.35355 3.81679 3.93267 3.95641 4.14878 4.26032 4.32356 4.62899 4.66503 4.76403 4.80298 4.86964 4.90313 4.94879 5.08210 5.12739 5.21255 5.35848 5.38616 5.43764 5.55435 5.71282 5.77412 5.87610 6.10925 6.45369 7.22424 7.90232 8.40603 9.23167 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.027325 B = 0.008156 C = 0.007012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.470911 B = 3432.076778 C = 3992.152403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 C -0.166 4.166 4 C 0.078 3.922 5 F -0.149 7.149 6 C -0.169 4.169 7 C -0.051 4.051 8 C -0.127 4.127 9 C -0.109 4.109 10 C 0.181 3.819 11 N -0.602 5.602 12 C 0.162 3.838 13 C -0.260 4.260 14 H 0.074 0.926 15 C -0.044 4.044 16 N -0.935 5.935 17 Si 0.957 3.043 18 H -0.282 1.282 19 H -0.296 1.296 20 H -0.270 1.270 21 H 0.072 0.928 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.149 0.851 25 H 0.144 0.856 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.065 0.935 31 H -0.004 1.004 32 H 0.013 0.987 33 H 0.046 0.954 34 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.858 9.284 -7.868 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.185 4.185 4 C 0.059 3.941 5 F -0.128 7.128 6 C -0.188 4.188 7 C -0.052 4.052 8 C -0.183 4.183 9 C -0.112 4.112 10 C 0.055 3.945 11 N -0.325 5.325 12 C 0.018 3.982 13 C -0.391 4.391 14 H 0.092 0.908 15 C -0.240 4.240 16 N -0.580 5.580 17 Si 0.785 3.215 18 H -0.209 1.209 19 H -0.223 1.223 20 H -0.196 1.196 21 H 0.091 0.909 22 H 0.107 0.893 23 H 0.090 0.910 24 H 0.166 0.834 25 H 0.162 0.838 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.014 0.986 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.767 9.182 -7.757 12.597 hybrid contribution 0.592 -0.359 1.050 1.258 sum 4.359 8.823 -6.707 11.910 Atomic orbital electron populations 1.21012 0.89620 1.03677 1.02699 1.19791 0.97299 0.91388 0.97018 1.21082 0.92030 0.99595 1.05782 1.17723 0.90551 0.81011 1.04855 1.91439 1.80511 1.46483 1.94327 1.21081 1.01097 0.90626 1.05968 1.19792 0.93328 0.95386 0.96668 1.21070 1.00012 0.94099 1.03114 1.20852 0.93934 0.97189 0.99208 1.19877 0.97083 0.91212 0.86289 1.43894 1.13465 1.66281 1.08827 1.20823 0.86084 0.95196 0.96132 1.19501 0.90132 1.14411 1.15024 0.90828 1.25982 0.97506 0.97837 1.02660 1.70148 1.15559 1.34785 1.37517 0.85512 0.78893 0.78024 0.79058 1.20850 1.22273 1.19565 0.90950 0.89312 0.90989 0.83359 0.83800 0.89550 0.90914 0.90734 0.92794 0.91672 0.98600 0.96830 0.93600 0.94352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.05 8.21 71.24 0.58 -2.47 16 2 C -0.05 -1.71 5.88 -19.87 -0.12 -1.83 16 3 C -0.17 -4.87 9.70 22.32 0.22 -4.66 16 4 C 0.08 2.39 7.30 22.38 0.16 2.55 16 5 F -0.15 -4.44 17.27 44.97 0.78 -3.66 16 6 C -0.17 -5.18 9.70 22.31 0.22 -4.96 16 7 C -0.05 -1.70 5.88 -19.87 -0.12 -1.82 16 8 C -0.13 -3.91 8.96 71.24 0.64 -3.28 16 9 C -0.11 -3.86 5.42 -19.86 -0.11 -3.97 16 10 C 0.18 7.10 4.92 85.63 0.42 7.52 16 11 N -0.60 -29.00 2.88 -731.28 -2.10 -31.10 16 12 C 0.16 7.72 8.99 127.77 1.15 8.87 16 13 C -0.26 -13.74 8.89 84.04 0.75 -12.99 16 14 H 0.07 3.75 5.67 -2.91 -0.02 3.73 16 15 C -0.04 -2.42 5.16 84.86 0.44 -1.98 16 16 N -0.93 -54.68 11.18 21.65 0.24 -54.44 16 17 Si 0.96 44.39 29.56 68.60 2.03 46.42 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 19 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H 0.07 2.04 6.70 -2.39 -0.02 2.02 16 22 H 0.09 1.82 8.12 -2.38 -0.02 1.81 16 23 H 0.07 1.99 5.43 -2.39 -0.01 1.98 16 24 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 25 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 26 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.07 2.02 8.11 -2.39 -0.02 2.00 16 28 H 0.07 2.76 3.83 -2.39 -0.01 2.75 16 29 H 0.05 2.13 6.29 -2.39 -0.02 2.12 16 30 H 0.07 2.34 6.00 -2.39 -0.01 2.33 16 31 H 0.00 -0.22 7.73 -2.39 -0.02 -0.24 16 32 H 0.01 0.69 7.30 -2.39 -0.02 0.67 16 33 H 0.05 1.80 4.12 -2.39 -0.01 1.79 16 34 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -60.93 273.09 6.29 -54.64 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.12 Total: 7.16 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 4.23 Total: -19.02 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -1.86 Total: -85.54 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.78 Total: -3.66 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -60.93 6.29 -54.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237321421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.063 kcal (2) G-P(sol) polarization free energy of solvation -60.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds