Wall clock time and date at job start Sun Mar 29 2020 21:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99612 * 2 1 4 4 H 1.48494 * 109.47072 * 239.99670 * 3 2 1 5 5 H 1.48500 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46850 * 119.99812 * 3 2 1 7 7 C 1.37873 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99694 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47195 * 179.97438 * 10 9 7 12 12 N 1.31126 * 126.55134 * 90.24709 * 11 10 9 13 13 C 1.34493 * 105.61403 * 180.12440 * 12 11 10 14 14 C 1.50698 * 126.28701 * 179.90544 * 13 12 11 15 15 H 1.09004 * 110.46136 * 17.12545 * 14 13 12 16 16 C 1.54381 * 110.41376 * 254.71369 * 14 13 12 17 17 C 1.54257 * 105.14978 * 217.42278 * 16 14 13 18 18 C 1.54377 * 105.06382 * 359.94367 * 17 16 14 19 19 N 1.48567 * 104.59159 * 23.85582 * 18 17 16 20 20 N 1.29944 * 107.42466 * 359.64191 * 13 12 11 21 21 O 1.21299 * 110.25218 * 0.22523 * 20 13 12 22 22 H 0.96999 * 120.00449 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47183 * 59.99400 * 9 7 2 24 24 H 1.09004 * 109.46834 * 299.99301 * 9 7 2 25 25 H 1.09004 * 109.47011 * 59.99349 * 10 9 7 26 26 H 1.08999 * 109.47272 * 299.99628 * 10 9 7 27 27 H 1.09002 * 110.32526 * 98.47097 * 16 14 13 28 28 H 1.08998 * 110.32190 * 336.36738 * 16 14 13 29 29 H 1.08995 * 110.32672 * 118.84838 * 17 16 14 30 30 H 1.09013 * 110.32172 * 240.94943 * 17 16 14 31 31 H 1.08999 * 110.41555 * 142.63458 * 18 17 16 32 32 H 1.09004 * 110.41760 * 264.96131 * 18 17 16 33 33 H 1.00902 * 110.99892 * 200.96033 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9672 0.0012 12 7 1.1050 -5.6461 -1.0519 13 6 0.4730 -6.7314 -0.5707 14 6 -0.1605 -7.8291 -1.3860 15 1 0.2073 -7.8026 -2.4118 16 6 -1.6986 -7.6986 -1.3620 17 6 -2.2253 -9.1476 -1.3102 18 6 -0.9615 -10.0341 -1.3087 19 7 0.1107 -9.1565 -0.7725 20 7 0.5137 -6.6624 0.7262 21 8 1.0948 -5.6564 1.0751 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8721 -3.6042 0.8905 26 1 2.8719 -3.6043 -0.8895 27 1 -2.0504 -7.1999 -2.2651 28 1 -2.0180 -7.1479 -0.4773 29 1 -2.8018 -9.3085 -0.3993 30 1 -2.8372 -9.3595 -2.1871 31 1 -1.1044 -10.8988 -0.6607 32 1 -0.7210 -10.3552 -2.3222 33 1 1.0229 -9.4975 -1.0365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326210255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:45 Heat of formation + Delta-G solvation = 55.948444 kcal Electronic energy + Delta-G solvation = -16252.518730 eV Core-core repulsion = 13508.920625 eV Total energy + Delta-G solvation = -2743.598105 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.05198 -38.71442 -35.40213 -34.31856 -32.47659 -30.54848 -30.28811 -28.98336 -25.81190 -23.77534 -22.90795 -21.49841 -21.04529 -19.83510 -17.58910 -17.07777 -16.91444 -16.33261 -15.62912 -14.55811 -14.30256 -13.81827 -13.49874 -13.15943 -12.75875 -12.53415 -12.39407 -12.04396 -11.90718 -11.53897 -11.49969 -10.97100 -10.95506 -10.77032 -10.70911 -10.53140 -10.10351 -9.97595 -9.32568 -9.11833 -8.89309 -8.43904 -6.08419 -4.13258 1.69110 2.64144 3.30809 3.35319 3.36733 3.43629 3.64578 4.18098 4.39835 4.43449 4.62344 4.71451 4.80812 5.03722 5.26747 5.28063 5.43627 5.55310 5.64694 5.73641 5.85923 5.96036 6.02475 6.12822 6.25737 6.45548 6.49293 6.65410 7.00780 7.50392 7.57853 7.87021 8.22719 8.69704 8.91833 9.51585 11.02819 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.055627 B = 0.004411 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.233494 B = 6345.540973 C = 6590.370355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.028 4.028 11 C 0.210 3.790 12 N -0.497 5.497 13 C 0.167 3.833 14 C 0.162 3.838 15 H 0.080 0.920 16 C -0.116 4.116 17 C -0.122 4.122 18 C 0.039 3.961 19 N -0.655 5.655 20 N -0.370 5.370 21 O 0.068 5.932 22 H 0.263 0.737 23 H 0.026 0.974 24 H 0.024 0.976 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.937 -16.404 -3.237 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.067 4.067 11 C -0.009 4.009 12 N -0.231 5.231 13 C -0.106 4.106 14 C 0.050 3.950 15 H 0.098 0.902 16 C -0.155 4.155 17 C -0.160 4.160 18 C -0.090 4.090 19 N -0.285 5.285 20 N -0.078 5.078 21 O 0.010 5.990 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.772 -16.869 -2.468 17.140 hybrid contribution 0.755 0.961 -0.920 1.530 sum -1.017 -15.908 -3.388 16.296 Atomic orbital electron populations 1.69958 1.06161 1.27070 1.49813 1.25007 0.94864 0.99418 0.94909 0.86566 0.79502 0.82688 0.78724 1.20106 1.21261 1.20064 1.21041 0.93136 0.90257 1.52044 0.92082 1.19151 0.93593 0.89828 0.98459 1.20731 0.97944 0.83722 1.04297 1.29576 0.94480 0.97082 0.79787 1.71881 1.16601 1.05351 1.29315 1.25254 1.00341 0.96413 0.88632 1.20492 0.95040 0.85493 0.93937 0.90197 1.22331 0.92140 0.97554 1.03454 1.22295 0.97175 0.93957 1.02603 1.22895 0.91544 0.96331 0.98252 1.63464 1.05976 1.01121 1.57932 1.74598 1.14783 1.02984 1.15465 1.85322 1.52318 1.25034 1.36312 0.92702 0.95567 0.95781 0.89126 0.88330 0.90288 0.90539 0.90693 0.90947 0.89714 0.93824 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.69 4.96 -27.88 -0.14 0.55 16 10 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 11 C 0.21 4.11 7.77 -13.06 -0.10 4.00 16 12 N -0.50 -9.71 11.55 -9.87 -0.11 -9.82 16 13 C 0.17 2.98 7.02 -156.38 -1.10 1.88 16 14 C 0.16 2.22 3.73 -67.13 -0.25 1.97 16 15 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.12 -1.42 6.53 -25.35 -0.17 -1.59 16 17 C -0.12 -1.15 7.00 -25.35 -0.18 -1.33 16 18 C 0.04 0.35 7.47 -2.18 -0.02 0.34 16 19 N -0.65 -7.87 7.26 -103.83 -0.75 -8.62 16 20 N -0.37 -7.08 12.14 30.89 0.38 -6.70 16 21 O 0.07 1.33 11.31 18.10 0.20 1.53 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 26 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.10 7.85 -51.93 -0.41 0.69 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.34 3.58 8.92 -39.29 -0.35 3.23 16 LS Contribution 285.47 15.07 4.30 4.30 Total: -1.00 -30.64 285.47 -7.32 -37.96 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.53 Total: -1.32 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.52 Total: -7.75 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.24 Total: -50.62 kcal Atomic # 8 Polarization: 1.33 SS G_CDS: 0.20 Total: 1.53 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.64 -7.32 -37.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326210255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.906 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds