Wall clock time and date at job start Sun Mar 29 2020 21:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99612 * 2 1 4 4 H 1.48494 * 109.47072 * 239.99670 * 3 2 1 5 5 H 1.48500 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46850 * 119.99812 * 3 2 1 7 7 C 1.37873 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99694 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47195 * 179.97438 * 10 9 7 12 12 N 1.31126 * 126.55134 * 90.24709 * 11 10 9 13 13 C 1.34493 * 105.61403 * 180.12440 * 12 11 10 14 14 C 1.50698 * 126.28701 * 179.90544 * 13 12 11 15 15 H 1.09004 * 110.46136 * 17.12545 * 14 13 12 16 16 C 1.54381 * 110.41376 * 254.71369 * 14 13 12 17 17 C 1.54257 * 105.14978 * 217.42278 * 16 14 13 18 18 C 1.54377 * 105.06382 * 359.94367 * 17 16 14 19 19 N 1.48567 * 104.59159 * 23.85582 * 18 17 16 20 20 N 1.29944 * 107.42466 * 359.64191 * 13 12 11 21 21 O 1.21299 * 110.25218 * 0.22523 * 20 13 12 22 22 H 0.96999 * 120.00449 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47183 * 59.99400 * 9 7 2 24 24 H 1.09004 * 109.46834 * 299.99301 * 9 7 2 25 25 H 1.09004 * 109.47011 * 59.99349 * 10 9 7 26 26 H 1.08999 * 109.47272 * 299.99628 * 10 9 7 27 27 H 1.09002 * 110.32526 * 98.47097 * 16 14 13 28 28 H 1.08998 * 110.32190 * 336.36738 * 16 14 13 29 29 H 1.08995 * 110.32672 * 118.84838 * 17 16 14 30 30 H 1.09013 * 110.32172 * 240.94943 * 17 16 14 31 31 H 1.08999 * 110.41555 * 142.63458 * 18 17 16 32 32 H 1.09004 * 110.41760 * 264.96131 * 18 17 16 33 33 H 1.00902 * 110.99892 * 200.96033 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9672 0.0012 12 7 1.1050 -5.6461 -1.0519 13 6 0.4730 -6.7314 -0.5707 14 6 -0.1605 -7.8291 -1.3860 15 1 0.2073 -7.8026 -2.4118 16 6 -1.6986 -7.6986 -1.3620 17 6 -2.2253 -9.1476 -1.3102 18 6 -0.9615 -10.0341 -1.3087 19 7 0.1107 -9.1565 -0.7725 20 7 0.5137 -6.6624 0.7262 21 8 1.0948 -5.6564 1.0751 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8721 -3.6042 0.8905 26 1 2.8719 -3.6043 -0.8895 27 1 -2.0504 -7.1999 -2.2651 28 1 -2.0180 -7.1479 -0.4773 29 1 -2.8018 -9.3085 -0.3993 30 1 -2.8372 -9.3595 -2.1871 31 1 -1.1044 -10.8988 -0.6607 32 1 -0.7210 -10.3552 -2.3222 33 1 1.0229 -9.4975 -1.0365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326210255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:44 Heat of formation + Delta-G solvation = 33.150917 kcal Electronic energy + Delta-G solvation = -16253.507305 eV Core-core repulsion = 13508.920625 eV Total energy + Delta-G solvation = -2744.586680 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.54485 -39.64918 -36.94489 -36.04856 -34.29968 -32.00785 -31.39639 -30.06768 -27.72417 -25.09124 -24.51013 -23.07024 -21.94938 -21.13288 -19.13444 -18.60589 -18.31990 -17.75360 -16.71989 -16.49579 -15.76296 -15.10012 -14.94190 -14.33516 -14.19229 -13.69719 -13.56062 -13.52709 -13.33957 -13.03393 -12.76878 -12.65180 -12.31968 -12.24585 -12.10342 -11.90779 -11.77333 -11.58323 -11.35691 -10.73239 -10.55113 -9.75108 -8.19466 -6.31854 0.16789 1.19364 1.46901 1.49814 1.57361 1.90148 2.42276 2.48594 3.02897 3.15834 3.35755 3.57144 3.75464 3.92207 4.13483 4.28961 4.43175 4.48012 4.53717 4.65072 4.68938 4.81342 4.92609 4.95451 4.98776 4.99925 5.13196 5.43583 5.53203 5.60504 5.78028 6.13738 6.20051 6.83616 7.19798 7.38428 8.92840 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.055627 B = 0.004411 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.233494 B = 6345.540973 C = 6590.370355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.034 3.966 10 C -0.013 4.013 11 C 0.204 3.796 12 N -0.511 5.511 13 C 0.173 3.827 14 C 0.158 3.842 15 H 0.094 0.906 16 C -0.118 4.118 17 C -0.117 4.117 18 C 0.041 3.959 19 N -0.671 5.671 20 N -0.385 5.385 21 O 0.058 5.942 22 H 0.264 0.736 23 H -0.007 1.007 24 H -0.004 1.004 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 -17.234 -3.967 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.097 0.903 9 C -0.004 4.004 10 C -0.052 4.052 11 C -0.015 4.015 12 N -0.245 5.245 13 C -0.101 4.101 14 C 0.046 3.954 15 H 0.112 0.888 16 C -0.157 4.157 17 C -0.155 4.155 18 C -0.087 4.087 19 N -0.302 5.302 20 N -0.096 5.096 21 O 0.003 5.997 22 H 0.072 0.928 23 H 0.012 0.988 24 H 0.015 0.985 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.768 -17.714 -3.185 18.014 hybrid contribution 0.397 1.145 -0.703 1.401 sum -0.370 -16.569 -3.888 17.023 Atomic orbital electron populations 1.70113 1.08111 1.28016 1.51306 1.26006 0.95665 1.03614 0.94478 0.85413 0.78099 0.77585 0.79434 1.18909 1.21479 1.18755 1.21546 0.94192 0.90979 1.51091 0.90313 1.18943 0.93989 0.91953 0.95553 1.20507 0.96715 0.81693 1.06276 1.29535 0.94658 0.97271 0.80061 1.71893 1.17026 1.06067 1.29561 1.26044 0.98979 0.96593 0.88524 1.20717 0.95511 0.85315 0.93828 0.88835 1.22360 0.91373 0.99477 1.02534 1.22318 0.97660 0.91777 1.03712 1.23002 0.90102 0.95876 0.99714 1.63430 1.07346 1.00824 1.58574 1.74585 1.15559 1.03164 1.16332 1.85302 1.52623 1.25345 1.36436 0.92760 0.98819 0.98531 0.86692 0.86803 0.89307 0.93437 0.91012 0.88391 0.88566 0.91549 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.14 13.29 21.45 0.28 -55.86 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.54 -28.89 9.11 25.60 0.23 -28.65 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.03 1.73 4.96 29.85 0.15 1.87 16 10 C -0.01 -0.51 5.78 29.85 0.17 -0.33 16 11 C 0.20 8.02 7.77 88.38 0.69 8.71 16 12 N -0.51 -19.93 11.55 -303.21 -3.50 -23.43 16 13 C 0.17 6.12 7.02 138.46 0.97 7.09 16 14 C 0.16 4.15 3.73 44.28 0.17 4.31 16 15 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 16 C -0.12 -2.80 6.53 31.49 0.21 -2.60 16 17 C -0.12 -1.94 7.00 31.49 0.22 -1.72 16 18 C 0.04 0.63 7.47 86.45 0.65 1.28 16 19 N -0.67 -14.99 7.26 -482.40 -3.50 -18.49 16 20 N -0.39 -14.87 12.14 -60.34 -0.73 -15.60 16 21 O 0.06 2.28 11.31 74.84 0.85 3.12 16 22 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 23 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 24 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 25 H 0.11 3.86 8.14 -2.38 -0.02 3.84 16 26 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 1.39 7.85 -2.39 -0.02 1.37 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.35 6.70 8.92 -89.69 -0.80 5.90 16 Total: -1.00 -66.50 285.47 -0.35 -66.85 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.31 Total: 8.38 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 3.91 Total: -9.55 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -7.45 Total: -113.38 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.85 Total: 3.12 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -66.50 -0.35 -66.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326210255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.002 kcal (2) G-P(sol) polarization free energy of solvation -66.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds