Wall clock time and date at job start Sun Mar 29 2020 21:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99723 * 2 1 4 4 H 1.48501 * 109.46876 * 239.99103 * 3 2 1 5 5 H 1.48494 * 109.47424 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47144 * 119.99468 * 3 2 1 7 7 C 1.37872 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00309 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47100 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46997 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47119 * 179.97438 * 11 10 9 13 13 O 1.21276 * 120.00006 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99907 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00069 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.47385 * 180.02562 * 15 14 12 17 17 C 1.34664 * 126.58651 * 265.03740 * 16 15 14 18 18 N 1.34134 * 108.01786 * 179.74146 * 17 16 15 19 19 C 1.30496 * 109.25675 * 0.37372 * 18 17 16 20 20 N 1.35047 * 108.70161 * 359.62603 * 19 18 17 21 21 H 0.96997 * 126.40535 * 180.25138 * 20 19 18 22 22 H 0.96991 * 120.00206 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47320 * 59.99418 * 9 7 2 24 24 H 1.08998 * 109.46602 * 299.99255 * 9 7 2 25 25 H 1.09000 * 109.47124 * 60.00271 * 10 9 7 26 26 H 1.08997 * 109.47111 * 299.99944 * 10 9 7 27 27 H 1.09007 * 109.46836 * 60.00581 * 11 10 9 28 28 H 1.08997 * 109.47593 * 300.00198 * 11 10 9 29 29 H 0.97001 * 120.00018 * 0.02562 * 14 12 11 30 30 H 1.08999 * 109.47661 * 59.99724 * 15 14 12 31 31 H 1.09012 * 109.46930 * 299.99842 * 15 14 12 32 32 H 1.07998 * 125.99171 * 359.92955 * 17 16 15 33 33 H 1.08002 * 125.65353 * 179.89694 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4598 -6.1325 0.0005 13 8 3.6521 -5.9108 0.0001 14 7 2.0105 -7.4032 0.0004 15 6 2.9625 -8.5167 0.0004 16 6 2.2090 -9.8218 -0.0004 17 6 1.8884 -10.5641 1.0765 18 7 1.2159 -11.6438 0.6508 19 6 1.1146 -11.6027 -0.6496 20 7 1.7185 -10.4802 -1.0957 21 1 1.7908 -10.1937 -2.0195 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6043 -0.8894 27 1 0.8535 -5.0451 -0.8887 28 1 0.8540 -5.0446 0.8913 29 1 1.0569 -7.5804 0.0004 30 1 3.5892 -8.4590 0.8903 31 1 3.5892 -8.4588 -0.8897 32 1 2.1278 -10.3296 2.1031 33 1 0.6248 -12.3416 -1.2665 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326756747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:25 Heat of formation + Delta-G solvation = -0.482822 kcal Electronic energy + Delta-G solvation = -15595.643798 eV Core-core repulsion = 12849.598649 eV Total energy + Delta-G solvation = -2746.045149 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.41074 -39.46383 -35.11522 -34.16461 -32.80224 -32.07774 -30.64457 -28.03366 -25.91868 -23.59297 -21.92107 -21.24769 -20.70069 -19.84420 -18.44240 -16.76237 -16.22206 -15.86651 -15.65179 -14.96114 -14.79246 -14.43725 -13.84941 -13.75768 -13.52156 -13.06716 -12.65909 -12.26335 -11.82378 -11.34905 -10.78814 -10.63628 -10.55680 -10.42609 -10.37727 -9.82247 -9.68812 -9.32420 -9.14443 -9.07690 -8.77576 -8.32009 -5.97824 -3.99439 1.53468 2.71175 2.76706 2.85904 3.36433 3.39846 3.40974 3.44505 4.25038 4.48618 4.49342 4.78978 5.04823 5.15484 5.25182 5.38140 5.46066 5.68506 5.70308 5.86520 6.22294 6.30929 6.35966 6.71310 6.91719 6.95856 7.15135 7.50122 7.67285 7.70289 7.83078 8.02704 8.36870 8.46554 9.07509 9.64539 11.13679 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.071736 B = 0.003358 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.228696 B = 8335.708918 C = 8523.436777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.514 3.486 13 O -0.536 6.536 14 N -0.740 5.740 15 C 0.196 3.804 16 C -0.044 4.044 17 C -0.001 4.001 18 N -0.496 5.496 19 C 0.192 3.808 20 N -0.563 5.563 21 H 0.421 0.579 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.016 0.984 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.401 0.599 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.173 0.827 33 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.929 -21.655 -2.754 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.302 3.698 13 O -0.412 6.412 14 N -0.395 5.395 15 C 0.071 3.929 16 C -0.160 4.160 17 C -0.150 4.150 18 N -0.215 5.215 19 C -0.093 4.093 20 N -0.166 5.166 21 H 0.259 0.741 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.235 0.765 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.190 0.810 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.354 -21.989 -2.204 22.140 hybrid contribution 0.211 1.456 -1.027 1.794 sum 1.565 -20.533 -3.230 20.844 Atomic orbital electron populations 1.69951 1.06041 1.26673 1.51110 1.25020 0.94860 0.99252 0.95366 0.86645 0.79567 0.83047 0.78687 1.20244 1.21330 1.20203 1.21238 0.93164 0.91032 1.50304 0.92614 1.19128 0.93963 0.91450 0.97128 1.21452 0.98652 0.91506 1.01717 1.21853 0.98116 0.93990 1.03822 1.21317 0.90450 0.83523 0.74520 1.90688 1.17310 1.84651 1.48537 1.46282 1.10045 1.05415 1.77708 1.19499 0.90200 0.79457 1.03710 1.21289 1.08065 0.98938 0.87707 1.22262 1.01427 0.92464 0.98869 1.70352 1.18826 1.23131 1.09212 1.25080 1.00940 0.91020 0.92234 1.43344 1.43636 1.19689 1.09953 0.74060 0.92999 0.96649 0.96567 0.92625 0.92720 0.89420 0.89211 0.76507 0.89033 0.90932 0.81011 0.77385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.03 4.44 -26.73 -0.12 -2.15 16 11 C -0.14 -2.21 5.70 -27.88 -0.16 -2.37 16 12 C 0.51 7.84 7.83 -10.98 -0.09 7.75 16 13 O -0.54 -10.30 15.98 5.56 0.09 -10.21 16 14 N -0.74 -8.08 5.55 -61.47 -0.34 -8.42 16 15 C 0.20 1.89 6.23 -5.19 -0.03 1.85 16 16 C -0.04 -0.38 6.61 -81.60 -0.54 -0.92 16 17 C 0.00 -0.01 11.79 -17.81 -0.21 -0.22 16 18 N -0.50 -5.25 11.25 -14.66 -0.16 -5.42 16 19 C 0.19 1.37 13.04 -90.37 -1.18 0.20 16 20 N -0.56 -3.63 6.15 -10.30 -0.06 -3.69 16 21 H 0.42 1.61 8.96 -40.82 -0.37 1.24 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 26 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 27 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.40 3.60 8.46 -40.82 -0.35 3.26 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 292.90 15.07 4.41 4.41 Total: -1.00 -35.30 292.90 -7.70 -43.00 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.48 Total: -1.01 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -2.87 Total: -9.27 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.17 Total: -43.90 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -35.30 -7.70 -43.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326756747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.516 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds