Wall clock time and date at job start Sun Mar 29 2020 21:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46858 * 2 1 4 4 C 1.53001 * 109.47165 * 240.00217 * 2 1 3 5 5 C 1.47198 * 109.47176 * 64.99865 * 4 2 1 6 6 N 3.43550 * 86.99887 * 280.50868 * 2 1 3 7 7 C 1.50700 * 109.47141 * 119.99932 * 2 1 3 8 8 O 1.20821 * 120.00122 * 120.00421 * 7 2 1 9 9 O 1.34231 * 119.99787 * 299.99805 * 7 2 1 10 10 C 1.45202 * 116.99876 * 174.87734 * 9 7 2 11 11 C 1.50699 * 112.84618 * 65.10665 * 10 9 7 12 12 H 1.07997 * 120.00473 * 243.00262 * 11 10 9 13 13 C 1.37882 * 120.00068 * 63.00125 * 11 10 9 14 14 N 1.31512 * 119.99735 * 353.70894 * 13 11 10 15 15 Si 1.86798 * 120.00203 * 173.70419 * 13 11 10 16 16 H 1.48498 * 109.47002 * 59.99983 * 15 13 11 17 17 H 1.48499 * 109.47087 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46887 * 300.00070 * 15 13 11 19 19 C 1.53778 * 113.61673 * 293.91328 * 10 9 7 20 20 C 1.53953 * 87.02032 * 220.04419 * 19 10 9 21 21 C 1.53777 * 113.61798 * 196.30028 * 10 9 7 22 22 H 1.09001 * 109.47136 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47336 * 300.00467 * 1 2 3 24 24 H 1.09004 * 109.47424 * 60.00061 * 1 2 3 25 25 H 1.08997 * 109.47024 * 185.00064 * 4 2 1 26 26 H 1.09000 * 109.47021 * 304.99701 * 4 2 1 27 27 H 0.97002 * 119.99926 * 185.01221 * 14 13 11 28 28 H 1.09000 * 113.61608 * 334.56268 * 19 10 9 29 29 H 1.09004 * 113.61317 * 105.47029 * 19 10 9 30 30 H 1.09003 * 113.53776 * 270.81307 * 20 19 10 31 31 H 1.09001 * 113.74447 * 139.94052 * 20 19 10 32 32 H 1.08997 * 113.62205 * 254.53396 * 21 10 9 33 33 H 1.08999 * 113.61131 * 25.35499 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6506 0.0390 -2.4481 6 7 1.3501 0.6257 -3.3732 7 6 2.0323 -0.7104 1.2305 8 8 2.7270 -1.6927 1.1196 9 8 1.7080 -0.2517 2.4496 10 6 2.1302 -1.0488 3.5875 11 6 3.6288 -1.1166 3.7306 12 1 4.1371 -2.0656 3.6442 13 6 4.3511 0.0328 3.9719 14 7 3.7505 1.2026 3.9544 15 14 6.1826 -0.0715 4.3239 16 1 6.8744 -0.6936 3.1665 17 1 6.7221 1.2937 4.5484 18 1 6.4072 -0.8977 5.5373 19 6 1.4409 -2.4211 3.6681 20 6 1.3569 -2.1999 5.1894 21 6 1.4022 -0.6913 4.8941 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 3.1263 -0.7994 -1.2056 26 1 1.6054 -1.7198 -1.2952 27 1 4.2699 2.0160 4.0517 28 1 0.4683 -2.4507 3.1769 29 1 2.0864 -3.2514 3.3817 30 1 2.2294 -2.5651 5.7312 31 1 0.4163 -2.5306 5.6297 32 1 2.0163 -0.1272 5.5960 33 1 0.4196 -0.2459 4.7386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344834559.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:42 Heat of formation + Delta-G solvation = -48.769300 kcal Electronic energy + Delta-G solvation = -17183.025151 eV Core-core repulsion = 14402.593393 eV Total energy + Delta-G solvation = -2780.431759 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55284 -37.64583 -36.56096 -34.26328 -33.91933 -32.31849 -28.04547 -26.25568 -24.60910 -24.32391 -22.55544 -19.54211 -18.57219 -17.71340 -16.64292 -15.58580 -15.35889 -15.15704 -14.74970 -14.24644 -13.93538 -13.80760 -13.18251 -12.63354 -12.58408 -12.26826 -12.04298 -11.72866 -11.61411 -11.15009 -11.05492 -10.97268 -10.88821 -10.81241 -10.47421 -10.32108 -9.93658 -9.85000 -9.30088 -8.83112 -8.57550 -8.55458 -6.14003 -4.25740 2.75843 2.85560 3.25846 3.30726 3.34222 3.41263 3.73412 4.31922 4.37105 4.89218 5.08488 5.15052 5.36077 5.61659 5.70414 5.74528 5.83007 5.85748 5.90995 6.11315 6.18980 6.30264 6.43408 6.48925 6.59980 6.87159 7.07275 7.26287 7.50973 7.60605 7.75785 7.91025 8.31659 8.77580 9.15219 9.44252 10.90251 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.008601 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.826277 B = 3254.837259 C = 3951.106226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.108 0.892 4 C -0.014 4.014 5 C 0.218 3.782 6 N -0.448 5.448 7 C 0.469 3.531 8 O -0.510 6.510 9 O -0.340 6.340 10 C 0.241 3.759 11 C -0.513 4.513 12 H 0.068 0.932 13 C 0.076 3.924 14 N -0.862 5.862 15 Si 0.892 3.108 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.159 4.159 20 C -0.132 4.132 21 C -0.109 4.109 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.264 0.736 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 -3.050 -2.968 6.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.126 0.874 4 C -0.054 4.054 5 C -0.099 4.099 6 N -0.126 5.126 7 C 0.311 3.689 8 O -0.399 6.399 9 O -0.255 6.255 10 C 0.208 3.792 11 C -0.551 4.551 12 H 0.086 0.914 13 C -0.130 4.130 14 N -0.498 5.498 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.197 4.197 20 C -0.170 4.170 21 C -0.147 4.147 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.077 0.923 25 H 0.138 0.862 26 H 0.133 0.867 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.298 -2.265 -4.233 7.150 hybrid contribution 1.275 -0.157 0.496 1.377 sum -4.023 -2.422 -3.737 6.001 Atomic orbital electron populations 1.21786 0.92488 1.02794 1.03060 1.20899 0.97961 1.01485 0.90379 0.87412 1.19181 1.04397 0.97562 0.84305 1.29197 0.92766 0.93556 0.94370 1.81189 1.09764 1.09727 1.11901 1.22468 0.78135 0.82789 0.85512 1.90572 1.35018 1.26594 1.87743 1.86477 1.71257 1.53601 1.14165 1.21189 0.93611 0.84448 0.79986 1.20903 0.89738 0.94613 1.49801 0.91421 1.25066 0.98630 0.95388 0.93925 1.70019 1.35642 0.97268 1.46876 0.86651 0.85017 0.77211 0.79209 1.19991 1.21174 1.19879 1.23563 0.99446 1.00684 0.96006 1.22565 1.00229 0.97934 0.96232 1.22906 0.98937 0.94760 0.98050 0.91959 0.90519 0.92272 0.86201 0.86665 0.92658 0.92201 0.91786 0.90248 0.92995 0.90758 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.93 37.16 0.33 -1.51 16 2 C -0.09 -1.29 2.80 -91.77 -0.26 -1.55 16 3 H 0.11 1.61 8.14 -51.93 -0.42 1.18 16 4 C -0.01 -0.18 4.54 -29.52 -0.13 -0.31 16 5 C 0.22 2.91 14.40 -20.76 -0.30 2.61 16 6 N -0.45 -6.95 18.54 42.15 0.78 -6.17 16 7 C 0.47 9.58 6.81 36.01 0.25 9.82 16 8 O -0.51 -11.47 14.37 -18.75 -0.27 -11.74 16 9 O -0.34 -7.89 9.68 -39.26 -0.38 -8.27 16 10 C 0.24 5.73 0.47 -90.96 -0.04 5.69 16 11 C -0.51 -13.53 7.01 -34.44 -0.24 -13.77 16 12 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 13 C 0.08 2.01 5.28 -17.82 -0.09 1.91 16 14 N -0.86 -23.39 12.73 55.43 0.71 -22.68 16 15 Si 0.89 20.62 29.55 -169.99 -5.02 15.60 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C -0.16 -3.29 6.64 -25.83 -0.17 -3.46 16 20 C -0.13 -2.52 7.81 -25.83 -0.20 -2.72 16 21 C -0.11 -2.37 7.26 -25.92 -0.19 -2.56 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 24 H 0.06 0.68 7.38 -51.93 -0.38 0.30 16 25 H 0.12 1.49 7.96 -51.93 -0.41 1.08 16 26 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.36 8.09 -51.93 -0.42 0.94 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.75 7.91 -51.93 -0.41 1.34 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -29.70 290.73 -5.41 -35.11 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.55 Total: -0.39 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -1.05 Total: -5.85 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 1.49 Total: -28.85 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.65 Total: -20.01 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.70 -5.41 -35.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344834559.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.656 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds