Wall clock time and date at job start Sun Mar 29 2020 21:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46858 * 2 1 4 4 C 1.53001 * 109.47165 * 240.00217 * 2 1 3 5 5 C 1.47198 * 109.47176 * 64.99865 * 4 2 1 6 6 N 3.43550 * 86.99887 * 280.50868 * 2 1 3 7 7 C 1.50700 * 109.47141 * 119.99932 * 2 1 3 8 8 O 1.20821 * 120.00122 * 120.00421 * 7 2 1 9 9 O 1.34231 * 119.99787 * 299.99805 * 7 2 1 10 10 C 1.45202 * 116.99876 * 174.87734 * 9 7 2 11 11 C 1.50699 * 112.84618 * 65.10665 * 10 9 7 12 12 H 1.07997 * 120.00473 * 243.00262 * 11 10 9 13 13 C 1.37882 * 120.00068 * 63.00125 * 11 10 9 14 14 N 1.31512 * 119.99735 * 353.70894 * 13 11 10 15 15 Si 1.86798 * 120.00203 * 173.70419 * 13 11 10 16 16 H 1.48498 * 109.47002 * 59.99983 * 15 13 11 17 17 H 1.48499 * 109.47087 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46887 * 300.00070 * 15 13 11 19 19 C 1.53778 * 113.61673 * 293.91328 * 10 9 7 20 20 C 1.53953 * 87.02032 * 220.04419 * 19 10 9 21 21 C 1.53777 * 113.61798 * 196.30028 * 10 9 7 22 22 H 1.09001 * 109.47136 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47336 * 300.00467 * 1 2 3 24 24 H 1.09004 * 109.47424 * 60.00061 * 1 2 3 25 25 H 1.08997 * 109.47024 * 185.00064 * 4 2 1 26 26 H 1.09000 * 109.47021 * 304.99701 * 4 2 1 27 27 H 0.97002 * 119.99926 * 185.01221 * 14 13 11 28 28 H 1.09000 * 113.61608 * 334.56268 * 19 10 9 29 29 H 1.09004 * 113.61317 * 105.47029 * 19 10 9 30 30 H 1.09003 * 113.53776 * 270.81307 * 20 19 10 31 31 H 1.09001 * 113.74447 * 139.94052 * 20 19 10 32 32 H 1.08997 * 113.62205 * 254.53396 * 21 10 9 33 33 H 1.08999 * 113.61131 * 25.35499 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6506 0.0390 -2.4481 6 7 1.3501 0.6257 -3.3732 7 6 2.0323 -0.7104 1.2305 8 8 2.7270 -1.6927 1.1196 9 8 1.7080 -0.2517 2.4496 10 6 2.1302 -1.0488 3.5875 11 6 3.6288 -1.1166 3.7306 12 1 4.1371 -2.0656 3.6442 13 6 4.3511 0.0328 3.9719 14 7 3.7505 1.2026 3.9544 15 14 6.1826 -0.0715 4.3239 16 1 6.8744 -0.6936 3.1665 17 1 6.7221 1.2937 4.5484 18 1 6.4072 -0.8977 5.5373 19 6 1.4409 -2.4211 3.6681 20 6 1.3569 -2.1999 5.1894 21 6 1.4022 -0.6913 4.8941 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 3.1263 -0.7994 -1.2056 26 1 1.6054 -1.7198 -1.2952 27 1 4.2699 2.0160 4.0517 28 1 0.4683 -2.4507 3.1769 29 1 2.0864 -3.2514 3.3817 30 1 2.2294 -2.5651 5.7312 31 1 0.4163 -2.5306 5.6297 32 1 2.0163 -0.1272 5.5960 33 1 0.4196 -0.2459 4.7386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344834559.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:41 Heat of formation + Delta-G solvation = -64.657116 kcal Electronic energy + Delta-G solvation = -17183.714099 eV Core-core repulsion = 14402.593393 eV Total energy + Delta-G solvation = -2781.120706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.18700 -39.17925 -37.85296 -35.95602 -35.18425 -34.30819 -29.13711 -28.13522 -26.29250 -25.82716 -24.12407 -21.04791 -20.37479 -19.02800 -18.22810 -17.08620 -16.88575 -16.81959 -16.47340 -15.81103 -15.39835 -15.26090 -14.58366 -14.07101 -13.86909 -13.60124 -13.43348 -13.18761 -12.97388 -12.85378 -12.82686 -12.70908 -12.20421 -12.07694 -12.03844 -11.94528 -11.69425 -11.56065 -10.96940 -10.72340 -10.40747 -10.34154 -8.13825 -6.30298 1.40427 1.41825 1.49017 1.63361 1.77877 1.82023 2.34754 2.41224 3.06530 3.26305 3.73837 3.95773 4.04958 4.09470 4.19438 4.32727 4.47714 4.65217 4.76606 4.81469 4.88142 4.93488 5.00087 5.09331 5.23128 5.31211 5.43697 5.50170 5.70108 5.83757 6.11488 6.51885 6.57061 6.74712 7.36707 7.52147 8.89441 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.008601 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.826277 B = 3254.837259 C = 3951.106226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 H 0.107 0.893 4 C -0.005 4.005 5 C 0.245 3.755 6 N -0.482 5.482 7 C 0.461 3.539 8 O -0.535 6.535 9 O -0.355 6.355 10 C 0.217 3.783 11 C -0.526 4.526 12 H 0.050 0.950 13 C 0.035 3.965 14 N -0.886 5.886 15 Si 0.943 3.057 16 H -0.279 1.279 17 H -0.281 1.281 18 H -0.267 1.267 19 C -0.150 4.150 20 C -0.115 4.115 21 C -0.110 4.110 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.122 0.878 26 H 0.137 0.863 27 H 0.263 0.737 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 -3.640 -3.256 7.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 H 0.125 0.875 4 C -0.044 4.044 5 C -0.072 4.072 6 N -0.160 5.160 7 C 0.305 3.695 8 O -0.426 6.426 9 O -0.271 6.271 10 C 0.183 3.817 11 C -0.563 4.563 12 H 0.068 0.932 13 C -0.168 4.168 14 N -0.523 5.523 15 Si 0.769 3.231 16 H -0.204 1.204 17 H -0.206 1.206 18 H -0.192 1.192 19 C -0.188 4.188 20 C -0.152 4.152 21 C -0.148 4.148 22 H 0.093 0.907 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.140 0.860 26 H 0.155 0.845 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.056 -2.858 -4.521 8.080 hybrid contribution 1.505 0.003 0.570 1.609 sum -4.551 -2.854 -3.950 6.668 Atomic orbital electron populations 1.21769 0.90490 1.03823 1.03444 1.20899 0.99502 1.00851 0.88599 0.87463 1.19155 1.04582 0.98066 0.82628 1.29108 0.91657 0.92587 0.93849 1.81230 1.11022 1.10784 1.12999 1.23406 0.77441 0.82686 0.86005 1.90551 1.36121 1.27893 1.88026 1.86447 1.71426 1.53998 1.15211 1.21351 0.92778 0.86576 0.80974 1.21051 0.91585 0.93868 1.49821 0.93186 1.25653 1.01970 0.95218 0.93941 1.70100 1.36683 0.97534 1.48001 0.85854 0.81041 0.77306 0.78947 1.20426 1.20647 1.19180 1.23484 0.99646 0.98349 0.97317 1.22491 1.01892 0.95539 0.95311 1.22895 0.98802 0.96412 0.96673 0.90654 0.91359 0.90633 0.86037 0.84473 0.92782 0.90326 0.93027 0.90913 0.89235 0.93422 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.93 71.98 0.64 -2.56 16 2 C -0.08 -2.20 2.80 -11.54 -0.03 -2.23 16 3 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 4 C 0.00 -0.10 4.54 28.79 0.13 0.03 16 5 C 0.24 5.99 14.40 89.44 1.29 7.28 16 6 N -0.48 -14.15 18.54 20.00 0.37 -13.78 16 7 C 0.46 18.47 6.81 71.24 0.49 18.95 16 8 O -0.54 -23.82 14.37 21.98 0.32 -23.51 16 9 O -0.35 -16.37 9.68 -51.43 -0.50 -16.87 16 10 C 0.22 10.27 0.47 -11.02 -0.01 10.26 16 11 C -0.53 -27.99 7.01 25.60 0.18 -27.81 16 12 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 13 C 0.04 1.89 5.28 84.66 0.45 2.33 16 14 N -0.89 -48.56 12.73 21.45 0.27 -48.29 16 15 Si 0.94 42.55 29.55 68.60 2.03 44.58 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 19 C -0.15 -6.01 6.64 31.18 0.21 -5.80 16 20 C -0.12 -4.18 7.81 31.18 0.24 -3.93 16 21 C -0.11 -4.72 7.26 31.12 0.23 -4.50 16 22 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.07 1.72 8.11 -2.39 -0.02 1.70 16 24 H 0.07 1.53 7.38 -2.38 -0.02 1.51 16 25 H 0.12 2.81 7.96 -2.39 -0.02 2.79 16 26 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.26 13.83 8.32 -92.71 -0.77 13.06 16 28 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.05 2.16 8.09 -2.39 -0.02 2.14 16 30 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.05 2.26 7.91 -2.39 -0.02 2.24 16 33 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -63.52 290.73 7.40 -56.13 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.10 Total: 9.70 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 3.81 Total: -7.96 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.64 Total: -62.06 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -0.18 Total: -40.38 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -63.52 7.40 -56.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344834559.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.532 kcal (2) G-P(sol) polarization free energy of solvation -63.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds