Wall clock time and date at job start Sun Mar 29 2020 21:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47020 * 2 1 4 4 C 1.52999 * 109.46559 * 240.00362 * 2 1 3 5 5 C 1.47192 * 109.47312 * 65.00193 * 4 2 1 6 6 N 3.43555 * 86.99520 * 280.51026 * 2 1 3 7 7 C 1.50696 * 109.46941 * 120.00256 * 2 1 3 8 8 O 1.20833 * 119.99595 * 120.00186 * 7 2 1 9 9 O 1.34224 * 120.00302 * 299.99657 * 7 2 1 10 10 C 1.45206 * 117.00077 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47078 * 330.00341 * 10 9 7 12 12 C 1.50704 * 109.47006 * 210.00139 * 10 9 7 13 13 H 1.07998 * 119.99806 * 0.02562 * 12 10 9 14 14 C 1.37876 * 119.99865 * 180.02562 * 12 10 9 15 15 N 1.31518 * 119.99732 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 119.99950 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47327 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47422 * 119.99942 * 16 14 12 19 19 H 1.48500 * 109.47345 * 239.99890 * 16 14 12 20 20 C 1.53000 * 109.47102 * 90.00098 * 10 9 7 21 21 C 1.53002 * 117.49702 * 8.74747 * 20 10 9 22 22 C 1.53000 * 117.49832 * 300.09133 * 20 10 9 23 23 H 1.09008 * 109.46908 * 299.99556 * 1 2 3 24 24 H 1.09003 * 109.47422 * 59.99947 * 1 2 3 25 25 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46649 * 184.99751 * 4 2 1 27 27 H 1.09003 * 109.47327 * 304.99236 * 4 2 1 28 28 H 0.97002 * 119.99723 * 180.02562 * 15 14 12 29 29 H 1.08999 * 115.54857 * 154.41158 * 20 10 9 30 30 H 1.08997 * 117.49959 * 0.02562 * 21 20 10 31 31 H 1.08998 * 117.49994 * 145.02187 * 21 20 10 32 32 H 1.09004 * 117.49736 * 214.97935 * 22 20 10 33 33 H 1.08999 * 117.50060 * 359.97195 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6505 0.0391 -2.4480 6 7 1.3499 0.6258 -3.3733 7 6 2.0323 -0.7104 1.2304 8 8 2.7270 -1.6929 1.1194 9 8 1.7081 -0.2519 2.4495 10 6 2.2277 -0.9859 3.5896 11 1 2.3419 -2.0368 3.3237 12 6 1.2696 -0.8615 4.7462 13 1 0.3609 -0.2886 4.6353 14 6 1.5532 -1.4792 5.9458 15 7 2.6596 -2.1774 6.0804 16 14 0.3653 -1.3257 7.3791 17 1 -0.7958 -0.4937 6.9729 18 1 -0.1077 -2.6759 7.7769 19 1 1.0552 -0.6847 8.5273 20 6 3.5877 -0.4105 3.9897 21 6 4.0345 0.8851 3.3093 22 6 4.7037 -0.4421 2.9435 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1263 -0.7994 -1.2057 27 1 1.6053 -1.7198 -1.2952 28 1 2.8589 -2.6123 6.9243 29 1 3.8709 -0.5549 5.0324 30 1 3.3593 1.3276 2.5770 31 1 4.6120 1.5927 3.9041 32 1 5.7212 -0.6071 3.2979 33 1 4.4691 -0.8733 1.9703 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344923463.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:04 Heat of formation + Delta-G solvation = -47.054611 kcal Electronic energy + Delta-G solvation = -16882.048154 eV Core-core repulsion = 14101.690750 eV Total energy + Delta-G solvation = -2780.357404 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.09570 -37.41426 -36.44862 -34.80978 -34.24353 -32.84985 -28.46036 -27.77439 -24.52129 -23.11170 -21.51145 -20.32361 -18.95905 -17.92908 -16.94290 -16.26717 -16.03044 -15.48999 -15.05491 -14.72986 -13.94268 -13.87725 -13.07527 -13.03652 -12.62680 -12.49194 -12.24207 -12.05347 -11.62372 -11.39651 -11.17162 -11.12203 -11.09732 -11.00417 -10.59788 -10.35014 -10.10619 -9.73059 -9.54558 -9.17902 -8.57677 -8.49329 -6.23718 -4.30854 2.56573 2.68853 2.81300 3.20753 3.27574 3.30962 3.41681 4.07079 4.31179 4.60958 4.81728 4.87757 5.09276 5.10195 5.45044 5.58719 5.60203 5.75455 5.80753 5.92804 6.03702 6.08857 6.21186 6.41388 6.62640 6.81976 6.95487 7.13238 7.43443 7.51481 7.53844 7.77798 8.05563 8.50852 8.80963 9.34061 10.83460 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033549 B = 0.006521 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.397244 B = 4293.019417 C = 4767.327854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.111 0.889 4 C -0.015 4.015 5 C 0.216 3.784 6 N -0.442 5.442 7 C 0.460 3.540 8 O -0.514 6.514 9 O -0.346 6.346 10 C 0.248 3.752 11 H 0.054 0.946 12 C -0.518 4.518 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.909 3.091 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.117 4.117 21 C -0.195 4.195 22 C -0.210 4.210 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.266 0.734 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 2.983 -7.955 8.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.129 0.871 4 C -0.055 4.055 5 C -0.102 4.102 6 N -0.119 5.119 7 C 0.302 3.698 8 O -0.404 6.404 9 O -0.262 6.262 10 C 0.195 3.805 11 H 0.072 0.928 12 C -0.556 4.556 13 H 0.089 0.911 14 C -0.138 4.138 15 N -0.522 5.522 16 Si 0.736 3.264 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.136 4.136 21 C -0.232 4.232 22 C -0.247 4.247 23 H 0.099 0.901 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.076 0.924 29 H 0.147 0.853 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.890 3.453 -9.179 9.848 hybrid contribution -0.137 -0.255 1.265 1.297 sum -1.027 3.198 -7.915 8.598 Atomic orbital electron populations 1.21829 0.91703 1.03505 1.03475 1.20871 0.98754 1.01071 0.89632 0.87118 1.19178 1.04296 0.97849 0.84208 1.29077 0.92998 0.93683 0.94428 1.81223 1.09427 1.09564 1.11656 1.22975 0.77736 0.82829 0.86257 1.90609 1.36007 1.26106 1.87692 1.86488 1.68656 1.56301 1.14738 1.20188 0.89799 0.91369 0.79101 0.92838 1.20981 1.06091 1.33365 0.95169 0.91087 1.24894 0.95769 0.94611 0.98540 1.69986 1.23878 1.32260 1.26082 0.86264 0.80706 0.78008 0.81452 1.19440 1.20752 1.20742 1.23034 0.94458 0.97075 0.98993 1.22806 1.04123 0.91403 1.04874 1.23154 0.98009 1.01443 1.02077 0.90103 0.91905 0.91474 0.86202 0.86343 0.92421 0.85282 0.89776 0.90437 0.90528 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.93 37.16 0.33 -1.32 16 2 C -0.08 -1.00 2.80 -91.77 -0.26 -1.25 16 3 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.02 -0.15 4.53 -29.52 -0.13 -0.29 16 5 C 0.22 2.42 14.40 -20.76 -0.30 2.12 16 6 N -0.44 -6.06 18.54 42.16 0.78 -5.28 16 7 C 0.46 8.01 6.20 36.00 0.22 8.24 16 8 O -0.51 -10.05 12.97 -18.76 -0.24 -10.30 16 9 O -0.35 -7.26 8.29 -39.24 -0.33 -7.58 16 10 C 0.25 6.11 2.41 -27.88 -0.07 6.04 16 11 H 0.05 1.47 7.16 -51.93 -0.37 1.10 16 12 C -0.52 -13.65 8.90 -34.44 -0.31 -13.96 16 13 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 14 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 15 N -0.88 -24.01 11.59 55.43 0.64 -23.37 16 16 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 C -0.12 -2.73 5.27 -90.62 -0.48 -3.21 16 21 C -0.19 -3.84 9.80 -26.69 -0.26 -4.10 16 22 C -0.21 -4.26 9.85 -26.70 -0.26 -4.53 16 23 H 0.08 0.98 8.11 -51.92 -0.42 0.56 16 24 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.12 1.11 7.96 -51.93 -0.41 0.70 16 27 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.13 3.33 6.46 -51.93 -0.34 3.00 16 30 H 0.08 1.58 6.91 -51.93 -0.36 1.22 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.09 1.92 5.37 -51.93 -0.28 1.64 16 LS Contribution 286.72 15.07 4.32 4.32 Total: -1.00 -29.05 286.72 -5.67 -34.72 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.22 Total: 2.96 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.60 Total: -10.67 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: 1.42 Total: -28.64 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.57 Total: -17.88 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.05 -5.67 -34.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344923463.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.334 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds