Wall clock time and date at job start Sun Mar 29 2020 21:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47020 * 2 1 4 4 C 1.52999 * 109.46559 * 240.00362 * 2 1 3 5 5 C 1.47192 * 109.47312 * 65.00193 * 4 2 1 6 6 N 3.43555 * 86.99520 * 280.51026 * 2 1 3 7 7 C 1.50696 * 109.46941 * 120.00256 * 2 1 3 8 8 O 1.20833 * 119.99595 * 120.00186 * 7 2 1 9 9 O 1.34224 * 120.00302 * 299.99657 * 7 2 1 10 10 C 1.45206 * 117.00077 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47078 * 330.00341 * 10 9 7 12 12 C 1.50704 * 109.47006 * 210.00139 * 10 9 7 13 13 H 1.07998 * 119.99806 * 0.02562 * 12 10 9 14 14 C 1.37876 * 119.99865 * 180.02562 * 12 10 9 15 15 N 1.31518 * 119.99732 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 119.99950 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47327 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47422 * 119.99942 * 16 14 12 19 19 H 1.48500 * 109.47345 * 239.99890 * 16 14 12 20 20 C 1.53000 * 109.47102 * 90.00098 * 10 9 7 21 21 C 1.53002 * 117.49702 * 8.74747 * 20 10 9 22 22 C 1.53000 * 117.49832 * 300.09133 * 20 10 9 23 23 H 1.09008 * 109.46908 * 299.99556 * 1 2 3 24 24 H 1.09003 * 109.47422 * 59.99947 * 1 2 3 25 25 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46649 * 184.99751 * 4 2 1 27 27 H 1.09003 * 109.47327 * 304.99236 * 4 2 1 28 28 H 0.97002 * 119.99723 * 180.02562 * 15 14 12 29 29 H 1.08999 * 115.54857 * 154.41158 * 20 10 9 30 30 H 1.08997 * 117.49959 * 0.02562 * 21 20 10 31 31 H 1.08998 * 117.49994 * 145.02187 * 21 20 10 32 32 H 1.09004 * 117.49736 * 214.97935 * 22 20 10 33 33 H 1.08999 * 117.50060 * 359.97195 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6505 0.0391 -2.4480 6 7 1.3499 0.6258 -3.3733 7 6 2.0323 -0.7104 1.2304 8 8 2.7270 -1.6929 1.1194 9 8 1.7081 -0.2519 2.4495 10 6 2.2277 -0.9859 3.5896 11 1 2.3419 -2.0368 3.3237 12 6 1.2696 -0.8615 4.7462 13 1 0.3609 -0.2886 4.6353 14 6 1.5532 -1.4792 5.9458 15 7 2.6596 -2.1774 6.0804 16 14 0.3653 -1.3257 7.3791 17 1 -0.7958 -0.4937 6.9729 18 1 -0.1077 -2.6759 7.7769 19 1 1.0552 -0.6847 8.5273 20 6 3.5877 -0.4105 3.9897 21 6 4.0345 0.8851 3.3093 22 6 4.7037 -0.4421 2.9435 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1263 -0.7994 -1.2057 27 1 1.6053 -1.7198 -1.2952 28 1 2.8589 -2.6123 6.9243 29 1 3.8709 -0.5549 5.0324 30 1 3.3593 1.3276 2.5770 31 1 4.6120 1.5927 3.9041 32 1 5.7212 -0.6071 3.2979 33 1 4.4691 -0.8733 1.9703 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344923463.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:03 Heat of formation + Delta-G solvation = -62.389800 kcal Electronic energy + Delta-G solvation = -16882.713138 eV Core-core repulsion = 14101.690750 eV Total energy + Delta-G solvation = -2781.022388 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.58642 -38.71585 -37.76245 -36.43630 -35.31590 -34.81153 -30.02072 -29.00922 -25.96712 -24.77758 -23.12026 -21.81573 -20.58734 -19.04560 -18.72323 -17.69572 -17.48555 -17.01648 -16.45397 -16.12278 -15.53465 -14.95282 -14.49011 -14.39330 -13.97880 -13.64093 -13.50274 -13.21408 -13.14053 -13.01055 -12.81132 -12.78075 -12.29056 -12.18191 -12.06555 -12.01233 -11.86656 -11.27753 -11.21615 -10.94509 -10.41470 -10.34753 -8.22418 -6.37336 1.40427 1.44571 1.45946 1.56004 1.61428 1.79649 2.10683 2.44487 3.04597 3.11080 3.23815 3.61968 3.89568 4.03388 4.14977 4.28836 4.33673 4.37221 4.68493 4.77976 4.81535 4.84019 5.00178 5.02409 5.08410 5.30215 5.32337 5.37340 5.59416 5.63870 5.98806 6.19344 6.54954 6.68274 7.05458 7.33562 8.84805 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033549 B = 0.006521 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.397244 B = 4293.019417 C = 4767.327854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 H 0.132 0.868 4 C -0.007 4.007 5 C 0.244 3.756 6 N -0.482 5.482 7 C 0.455 3.545 8 O -0.536 6.536 9 O -0.354 6.354 10 C 0.256 3.744 11 H 0.012 0.988 12 C -0.540 4.540 13 H 0.067 0.933 14 C 0.020 3.980 15 N -0.913 5.913 16 Si 0.973 3.027 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.276 1.276 20 C -0.151 4.151 21 C -0.169 4.169 22 C -0.197 4.197 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.268 0.732 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 3.986 -8.591 9.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 H 0.149 0.851 4 C -0.047 4.047 5 C -0.072 4.072 6 N -0.159 5.159 7 C 0.300 3.700 8 O -0.427 6.427 9 O -0.270 6.270 10 C 0.202 3.798 11 H 0.030 0.970 12 C -0.578 4.578 13 H 0.085 0.915 14 C -0.180 4.180 15 N -0.551 5.551 16 Si 0.797 3.203 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.202 1.202 20 C -0.170 4.170 21 C -0.206 4.206 22 C -0.234 4.234 23 H 0.088 0.912 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.140 4.464 -9.839 10.864 hybrid contribution -0.041 -0.608 1.416 1.542 sum -1.181 3.856 -8.423 9.338 Atomic orbital electron populations 1.21836 0.90873 1.03773 1.03850 1.20930 0.99241 1.01563 0.87404 0.85056 1.19196 1.05115 0.97898 0.82493 1.29035 0.91708 0.92601 0.93888 1.81271 1.10891 1.10859 1.12914 1.23987 0.77007 0.82712 0.86328 1.90600 1.37040 1.27256 1.87798 1.86467 1.69049 1.56046 1.15424 1.19699 0.90473 0.89645 0.79940 0.97016 1.21286 1.06501 1.33627 0.96358 0.91477 1.25707 0.97237 0.94079 1.00946 1.70107 1.25376 1.32862 1.26720 0.85280 0.78761 0.78065 0.78197 1.18730 1.20398 1.20178 1.22732 0.94992 1.00994 0.98263 1.22889 1.03208 0.90642 1.03858 1.23160 0.97648 1.01741 1.00859 0.91152 0.90062 0.91366 0.84932 0.85013 0.92322 0.88259 0.88654 0.88477 0.89223 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.93 71.98 0.64 -2.31 16 2 C -0.07 -1.54 2.80 -11.54 -0.03 -1.57 16 3 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 4 C -0.01 -0.12 4.53 28.79 0.13 0.01 16 5 C 0.24 4.85 14.40 89.44 1.29 6.13 16 6 N -0.48 -12.25 18.54 20.00 0.37 -11.88 16 7 C 0.46 15.42 6.20 71.23 0.44 15.86 16 8 O -0.54 -20.72 12.97 21.94 0.28 -20.44 16 9 O -0.35 -14.77 8.29 -51.35 -0.43 -15.20 16 10 C 0.26 12.89 2.41 29.85 0.07 12.97 16 11 H 0.01 0.70 7.16 -2.39 -0.02 0.68 16 12 C -0.54 -29.04 8.90 25.60 0.23 -28.81 16 13 H 0.07 3.55 7.81 -2.91 -0.02 3.52 16 14 C 0.02 1.08 5.20 84.65 0.44 1.52 16 15 N -0.91 -50.78 11.59 21.45 0.25 -50.53 16 16 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 17 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 20 C -0.15 -7.12 5.27 -10.79 -0.06 -7.17 16 21 C -0.17 -6.37 9.80 30.62 0.30 -6.07 16 22 C -0.20 -7.82 9.85 30.62 0.30 -7.52 16 23 H 0.07 1.60 8.11 -2.38 -0.02 1.58 16 24 H 0.08 1.38 7.38 -2.39 -0.02 1.36 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.13 2.05 7.96 -2.38 -0.02 2.03 16 27 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.10 5.28 6.46 -2.39 -0.02 5.27 16 30 H 0.10 3.36 6.91 -2.39 -0.02 3.35 16 31 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.09 3.73 5.37 -2.39 -0.01 3.72 16 Total: -1.00 -63.72 286.72 7.37 -56.35 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.11 Total: 15.01 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 3.76 Total: -16.97 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.62 Total: -62.40 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.14 Total: -35.64 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -63.72 7.37 -56.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344923463.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.039 kcal (2) G-P(sol) polarization free energy of solvation -63.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds