Wall clock time and date at job start Sun Mar 29 2020 22:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46908 * 2 1 4 4 C 1.50699 * 109.47687 * 239.99692 * 2 1 3 5 5 H 1.07995 * 120.00437 * 245.26862 * 4 2 1 6 6 C 1.37883 * 119.99539 * 65.26625 * 4 2 1 7 7 N 1.31513 * 119.99831 * 8.81547 * 6 4 2 8 8 Si 1.86798 * 119.99682 * 188.81650 * 6 4 2 9 9 H 1.48494 * 109.47345 * 269.99795 * 8 6 4 10 10 H 1.48502 * 109.47438 * 30.00082 * 8 6 4 11 11 H 1.48502 * 109.47289 * 149.99867 * 8 6 4 12 12 N 1.46906 * 109.46888 * 119.99778 * 2 1 3 13 13 C 1.46901 * 110.99938 * 255.16134 * 12 2 1 14 14 H 1.09002 * 109.47420 * 325.98418 * 13 12 2 15 15 C 1.52999 * 109.47115 * 85.98379 * 13 12 2 16 16 C 1.50697 * 109.47032 * 205.98342 * 13 12 2 17 17 C 1.38213 * 120.01811 * 339.73062 * 16 13 12 18 18 C 1.38222 * 120.02991 * 179.72037 * 17 16 13 19 19 C 1.38268 * 120.04736 * 0.55318 * 18 17 16 20 20 C 1.38174 * 120.02674 * 359.71995 * 19 18 17 21 21 C 1.38445 * 120.01032 * 160.00334 * 16 13 12 22 22 F 1.35094 * 120.02552 * 0.02562 * 21 16 13 23 23 H 1.09002 * 109.46915 * 189.53535 * 1 2 3 24 24 H 1.08995 * 109.47687 * 309.53833 * 1 2 3 25 25 H 1.09000 * 109.46825 * 69.54776 * 1 2 3 26 26 H 0.96994 * 120.00561 * 5.59993 * 7 6 4 27 27 H 1.00897 * 110.99768 * 131.21426 * 12 2 1 28 28 H 1.08995 * 109.47232 * 180.86689 * 15 13 12 29 29 H 1.09003 * 109.47088 * 300.87351 * 15 13 12 30 30 H 1.09010 * 109.46965 * 60.86983 * 15 13 12 31 31 H 1.08006 * 119.98502 * 359.97438 * 17 16 13 32 32 H 1.08001 * 119.97688 * 180.27654 * 18 17 16 33 33 H 1.08000 * 119.98353 * 179.74596 * 19 18 17 34 34 H 1.07998 * 120.01193 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5814 -1.6354 -1.1336 6 6 1.7912 -0.1794 -2.4798 7 7 1.2787 1.0263 -2.5940 8 14 2.1924 -1.1728 -4.0100 9 1 3.5877 -0.8897 -4.4323 10 1 2.0495 -2.6206 -3.7121 11 1 1.2590 -0.7978 -5.1025 12 7 2.0196 -0.6925 1.1995 13 6 2.5262 0.2660 2.1908 14 1 2.9841 1.1116 1.6776 15 6 1.3680 0.7625 3.0585 16 6 3.5536 -0.4088 3.0626 17 6 3.5861 -1.7876 3.1522 18 6 4.5321 -2.4070 3.9473 19 6 5.4396 -1.6478 4.6627 20 6 5.4054 -0.2690 4.5791 21 6 4.4618 0.3524 3.7785 22 9 4.4271 1.7004 3.6964 23 1 -0.3633 -1.0135 0.1702 24 1 -0.3634 0.6541 0.7925 25 1 -0.3633 0.3591 -0.9629 26 1 1.1459 1.5737 -1.8044 27 1 2.7253 -1.3732 0.9613 28 1 1.7412 1.4852 3.7839 29 1 0.6175 1.2368 2.4260 30 1 0.9199 -0.0812 3.5837 31 1 2.8747 -2.3815 2.5976 32 1 4.5596 -3.4847 4.0132 33 1 6.1756 -2.1327 5.2868 34 1 6.1146 0.3238 5.1377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042375310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:05 Heat of formation + Delta-G solvation = -29.490322 kcal Electronic energy + Delta-G solvation = -16773.214004 eV Core-core repulsion = 14005.991034 eV Total energy + Delta-G solvation = -2767.222970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.74295 -39.19456 -36.53237 -33.67906 -30.99413 -30.50976 -28.88769 -27.58961 -24.66591 -23.43195 -22.51649 -20.59155 -19.88674 -17.75586 -16.93924 -16.25809 -15.72616 -15.46044 -14.49486 -14.18768 -14.00032 -13.76491 -13.69316 -12.97264 -12.50830 -12.37103 -12.13234 -11.89195 -11.73001 -11.43518 -10.99032 -10.92459 -10.89546 -10.58660 -10.16109 -10.14568 -10.09578 -8.85694 -8.62161 -8.53947 -8.29813 -7.51461 -6.39236 -4.12033 1.24230 1.30411 3.41299 3.45240 3.60801 3.68074 4.36823 4.49773 4.76617 4.80580 5.02409 5.10165 5.32710 5.35974 5.47086 5.69530 5.85493 6.00074 6.07616 6.12305 6.26975 6.31594 6.46670 6.52169 6.59245 6.63125 6.92286 6.99045 7.01242 7.12832 7.64166 7.82822 8.02223 8.44613 8.55421 8.82395 9.59722 10.97210 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.006480 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.709572 B = 4319.679701 C = 4641.855914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.198 3.802 3 H 0.004 0.996 4 C -0.611 4.611 5 H 0.052 0.948 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 1.066 2.934 9 H -0.289 1.289 10 H -0.288 1.288 11 H -0.283 1.283 12 N -0.677 5.677 13 C 0.122 3.878 14 H 0.051 0.949 15 C -0.130 4.130 16 C -0.107 4.107 17 C -0.080 4.080 18 C -0.131 4.131 19 C -0.103 4.103 20 C -0.158 4.158 21 C 0.097 3.903 22 F -0.139 7.139 23 H 0.041 0.959 24 H 0.016 0.984 25 H 0.054 0.946 26 H 0.271 0.729 27 H 0.337 0.663 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.987 -4.185 13.468 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.090 3.910 3 H 0.022 0.978 4 C -0.650 4.650 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.542 5.542 8 Si 0.894 3.106 9 H -0.216 1.216 10 H -0.214 1.214 11 H -0.208 1.208 12 N -0.310 5.310 13 C 0.011 3.989 14 H 0.069 0.931 15 C -0.188 4.188 16 C -0.108 4.108 17 C -0.098 4.098 18 C -0.149 4.149 19 C -0.121 4.121 20 C -0.177 4.177 21 C 0.077 3.923 22 F -0.118 7.118 23 H 0.060 0.940 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.156 0.844 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.163 0.837 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.239 -4.154 12.084 13.810 hybrid contribution 1.019 0.540 1.259 1.707 sum 6.257 -3.614 13.343 15.174 Atomic orbital electron populations 1.21819 0.98307 0.99236 0.99101 1.19310 0.92145 0.92916 0.86639 0.97813 1.22250 1.39779 1.10404 0.92533 0.92928 1.25740 0.93994 0.97020 1.01238 1.70742 1.41047 1.08547 1.33891 0.83606 0.76470 0.75004 0.75496 1.21628 1.21389 1.20849 1.60910 1.40275 1.15856 1.13963 1.20449 0.91816 0.94203 0.92416 0.93124 1.21766 0.97870 1.00330 0.98828 1.20315 0.96939 0.94559 0.99015 1.21117 0.98044 0.93297 0.97343 1.21230 0.95825 1.00219 0.97676 1.20939 0.99030 0.92747 0.99394 1.21055 0.99709 0.95755 1.01171 1.17609 0.97913 0.76933 0.99840 1.91476 1.95975 1.29334 1.95010 0.94013 0.96520 0.92690 0.91757 0.84360 0.93489 0.91832 0.92334 0.83748 0.85506 0.85473 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.22 37.16 0.34 -2.69 16 2 C 0.20 4.96 2.24 -68.86 -0.15 4.81 16 3 H 0.00 0.12 6.42 -51.93 -0.33 -0.22 16 4 C -0.61 -16.86 8.51 -34.44 -0.29 -17.16 16 5 H 0.05 1.44 7.42 -52.49 -0.39 1.05 16 6 C 0.03 0.71 5.12 -17.82 -0.09 0.62 16 7 N -0.91 -27.00 12.78 55.43 0.71 -26.29 16 8 Si 1.07 24.97 29.91 -169.99 -5.08 19.89 16 9 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.68 -14.30 5.54 -102.17 -0.57 -14.86 16 13 C 0.12 2.30 2.50 -68.87 -0.17 2.13 16 14 H 0.05 1.08 7.14 -51.93 -0.37 0.71 16 15 C -0.13 -2.24 9.41 37.16 0.35 -1.89 16 16 C -0.11 -1.76 4.99 -104.56 -0.52 -2.29 16 17 C -0.08 -1.16 8.86 -39.60 -0.35 -1.51 16 18 C -0.13 -1.56 10.04 -39.58 -0.40 -1.96 16 19 C -0.10 -1.14 10.04 -39.59 -0.40 -1.54 16 20 C -0.16 -1.99 10.03 -39.52 -0.40 -2.39 16 21 C 0.10 1.50 7.24 -39.42 -0.29 1.22 16 22 F -0.14 -2.31 16.66 2.25 0.04 -2.27 16 23 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.02 0.35 6.62 -51.93 -0.34 0.01 16 25 H 0.05 1.43 6.46 -51.93 -0.34 1.10 16 26 H 0.27 8.09 6.44 -40.82 -0.26 7.83 16 27 H 0.34 7.07 6.07 -39.29 -0.24 6.84 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.15 6.53 -51.93 -0.34 0.81 16 30 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 31 H 0.14 2.12 6.70 -52.48 -0.35 1.77 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 282.83 15.07 4.26 4.26 Total: -1.00 -29.49 282.83 -7.31 -36.80 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.30 Total: 5.13 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -2.37 Total: -22.66 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.14 Total: -41.15 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.49 -7.31 -36.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042375310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.307 kcal (2) G-P(sol) polarization free energy of solvation -29.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds