Wall clock time and date at job start Sun Mar 29 2020 22:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46908 * 2 1 4 4 C 1.50699 * 109.47687 * 239.99692 * 2 1 3 5 5 H 1.07995 * 120.00437 * 245.26862 * 4 2 1 6 6 C 1.37883 * 119.99539 * 65.26625 * 4 2 1 7 7 N 1.31513 * 119.99831 * 8.81547 * 6 4 2 8 8 Si 1.86798 * 119.99682 * 188.81650 * 6 4 2 9 9 H 1.48494 * 109.47345 * 269.99795 * 8 6 4 10 10 H 1.48502 * 109.47438 * 30.00082 * 8 6 4 11 11 H 1.48502 * 109.47289 * 149.99867 * 8 6 4 12 12 N 1.46906 * 109.46888 * 119.99778 * 2 1 3 13 13 C 1.46901 * 110.99938 * 255.16134 * 12 2 1 14 14 H 1.09002 * 109.47420 * 325.98418 * 13 12 2 15 15 C 1.52999 * 109.47115 * 85.98379 * 13 12 2 16 16 C 1.50697 * 109.47032 * 205.98342 * 13 12 2 17 17 C 1.38213 * 120.01811 * 339.73062 * 16 13 12 18 18 C 1.38222 * 120.02991 * 179.72037 * 17 16 13 19 19 C 1.38268 * 120.04736 * 0.55318 * 18 17 16 20 20 C 1.38174 * 120.02674 * 359.71995 * 19 18 17 21 21 C 1.38445 * 120.01032 * 160.00334 * 16 13 12 22 22 F 1.35094 * 120.02552 * 0.02562 * 21 16 13 23 23 H 1.09002 * 109.46915 * 189.53535 * 1 2 3 24 24 H 1.08995 * 109.47687 * 309.53833 * 1 2 3 25 25 H 1.09000 * 109.46825 * 69.54776 * 1 2 3 26 26 H 0.96994 * 120.00561 * 5.59993 * 7 6 4 27 27 H 1.00897 * 110.99768 * 131.21426 * 12 2 1 28 28 H 1.08995 * 109.47232 * 180.86689 * 15 13 12 29 29 H 1.09003 * 109.47088 * 300.87351 * 15 13 12 30 30 H 1.09010 * 109.46965 * 60.86983 * 15 13 12 31 31 H 1.08006 * 119.98502 * 359.97438 * 17 16 13 32 32 H 1.08001 * 119.97688 * 180.27654 * 18 17 16 33 33 H 1.08000 * 119.98353 * 179.74596 * 19 18 17 34 34 H 1.07998 * 120.01193 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5814 -1.6354 -1.1336 6 6 1.7912 -0.1794 -2.4798 7 7 1.2787 1.0263 -2.5940 8 14 2.1924 -1.1728 -4.0100 9 1 3.5877 -0.8897 -4.4323 10 1 2.0495 -2.6206 -3.7121 11 1 1.2590 -0.7978 -5.1025 12 7 2.0196 -0.6925 1.1995 13 6 2.5262 0.2660 2.1908 14 1 2.9841 1.1116 1.6776 15 6 1.3680 0.7625 3.0585 16 6 3.5536 -0.4088 3.0626 17 6 3.5861 -1.7876 3.1522 18 6 4.5321 -2.4070 3.9473 19 6 5.4396 -1.6478 4.6627 20 6 5.4054 -0.2690 4.5791 21 6 4.4618 0.3524 3.7785 22 9 4.4271 1.7004 3.6964 23 1 -0.3633 -1.0135 0.1702 24 1 -0.3634 0.6541 0.7925 25 1 -0.3633 0.3591 -0.9629 26 1 1.1459 1.5737 -1.8044 27 1 2.7253 -1.3732 0.9613 28 1 1.7412 1.4852 3.7839 29 1 0.6175 1.2368 2.4260 30 1 0.9199 -0.0812 3.5837 31 1 2.8747 -2.3815 2.5976 32 1 4.5596 -3.4847 4.0132 33 1 6.1756 -2.1327 5.2868 34 1 6.1146 0.3238 5.1377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042375310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:04 Heat of formation + Delta-G solvation = -46.804151 kcal Electronic energy + Delta-G solvation = -16773.964788 eV Core-core repulsion = 14005.991034 eV Total energy + Delta-G solvation = -2767.973754 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.94866 -40.36680 -38.17146 -35.50630 -32.72974 -31.55501 -30.22070 -29.37165 -26.81149 -24.65026 -23.70222 -22.32359 -21.42902 -19.39727 -18.41640 -17.49301 -17.03037 -16.68695 -16.00272 -15.80303 -15.66601 -15.37070 -14.97568 -14.22426 -14.11144 -14.03340 -13.63263 -13.38200 -13.06182 -12.94662 -12.77871 -12.53667 -12.47906 -12.18328 -12.08172 -11.93798 -11.64955 -10.70676 -10.45690 -9.91295 -9.63640 -9.32347 -8.64214 -6.38307 0.17915 0.27080 1.52233 1.60332 1.78495 2.54963 2.65016 3.13162 3.24336 3.38130 3.57638 3.89363 4.07332 4.23879 4.34475 4.39824 4.46599 4.57694 4.68634 4.76461 4.93528 4.94781 4.97047 5.07326 5.13760 5.21898 5.24987 5.42625 5.47705 5.61621 5.80613 5.95166 5.99431 6.40646 6.49862 6.73905 7.42801 8.71289 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.006480 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.709572 B = 4319.679701 C = 4641.855914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.201 3.799 3 H -0.030 1.030 4 C -0.623 4.623 5 H 0.054 0.946 6 C -0.025 4.025 7 N -0.930 5.930 8 Si 1.114 2.886 9 H -0.277 1.277 10 H -0.268 1.268 11 H -0.283 1.283 12 N -0.665 5.665 13 C 0.123 3.877 14 H 0.015 0.985 15 C -0.122 4.122 16 C -0.132 4.132 17 C -0.093 4.093 18 C -0.122 4.122 19 C -0.089 4.089 20 C -0.153 4.153 21 C 0.070 3.930 22 F -0.154 7.154 23 H 0.046 0.954 24 H 0.033 0.967 25 H 0.029 0.971 26 H 0.257 0.743 27 H 0.337 0.663 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.170 0.830 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.453 -6.398 14.898 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.092 3.908 3 H -0.012 1.012 4 C -0.661 4.661 5 H 0.072 0.928 6 C -0.224 4.224 7 N -0.567 5.567 8 Si 0.936 3.064 9 H -0.203 1.203 10 H -0.193 1.193 11 H -0.208 1.208 12 N -0.297 5.297 13 C 0.013 3.987 14 H 0.033 0.967 15 C -0.180 4.180 16 C -0.133 4.133 17 C -0.111 4.111 18 C -0.140 4.140 19 C -0.106 4.106 20 C -0.172 4.172 21 C 0.051 3.949 22 F -0.133 7.133 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.156 0.844 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.178 0.822 33 H 0.188 0.812 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.707 -6.371 13.547 16.404 hybrid contribution 0.630 1.204 0.929 1.646 sum 7.337 -5.166 14.477 17.032 Atomic orbital electron populations 1.21644 0.97490 0.99731 0.98318 1.19158 0.92772 0.91181 0.87717 1.01213 1.22608 1.39503 1.10373 0.93617 0.92805 1.27196 0.93294 0.97164 1.04738 1.70863 1.43040 1.09571 1.33189 0.82982 0.76763 0.74611 0.72034 1.20312 1.19322 1.20847 1.60868 1.40529 1.15813 1.12507 1.20359 0.93195 0.92848 0.92287 0.96683 1.21684 0.96922 1.00850 0.98520 1.20130 0.97435 0.95569 1.00173 1.21163 0.99180 0.92322 0.98412 1.21612 0.94383 1.01977 0.95991 1.21452 0.98806 0.91960 0.98419 1.21419 0.98841 0.96875 1.00070 1.17933 0.99205 0.76450 1.01338 1.91433 1.96175 1.30419 1.95273 0.93443 0.94801 0.95163 0.93259 0.84367 0.92194 0.93364 0.91250 0.84427 0.82237 0.81241 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.59 9.22 71.98 0.66 -4.92 16 2 C 0.20 10.41 2.24 44.17 0.10 10.51 16 3 H -0.03 -1.72 6.42 -2.39 -0.02 -1.74 16 4 C -0.62 -34.94 8.51 25.60 0.22 -34.73 16 5 H 0.05 2.95 7.42 -2.91 -0.02 2.92 16 6 C -0.02 -1.41 5.12 84.66 0.43 -0.98 16 7 N -0.93 -56.92 12.78 21.45 0.27 -56.64 16 8 Si 1.11 50.08 29.91 68.60 2.05 52.14 16 9 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 N -0.67 -28.74 5.54 -477.15 -2.64 -31.38 16 13 C 0.12 4.84 2.50 44.17 0.11 4.95 16 14 H 0.02 0.70 7.14 -2.39 -0.02 0.68 16 15 C -0.12 -4.28 9.41 71.98 0.68 -3.60 16 16 C -0.13 -4.33 4.99 -19.82 -0.10 -4.43 16 17 C -0.09 -2.56 8.86 22.26 0.20 -2.36 16 18 C -0.12 -2.44 10.04 22.27 0.22 -2.22 16 19 C -0.09 -1.57 10.04 22.26 0.22 -1.34 16 20 C -0.15 -3.42 10.03 22.31 0.22 -3.20 16 21 C 0.07 2.14 7.24 22.38 0.16 2.30 16 22 F -0.15 -5.20 16.66 44.97 0.75 -4.45 16 23 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.03 1.50 6.62 -2.39 -0.02 1.49 16 25 H 0.03 1.61 6.46 -2.39 -0.02 1.59 16 26 H 0.26 16.09 6.44 -92.71 -0.60 15.49 16 27 H 0.34 14.38 6.07 -89.70 -0.54 13.84 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 1.79 6.53 -2.39 -0.02 1.78 16 30 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.14 3.92 6.70 -2.91 -0.02 3.90 16 32 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -65.53 282.83 4.30 -61.24 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.73 Total: 19.12 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 3.13 Total: -40.02 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -2.37 Total: -88.02 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.75 Total: -4.45 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.14 kcal Total: -65.53 4.30 -61.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042375310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.434 kcal (2) G-P(sol) polarization free energy of solvation -65.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds